RNA–Protein interactions for RNA: ENST00000552828.5

CKAP4-202, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 3

Gene CKAP4, Length 831 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-202ENST00000552828 TMEM88BA6NKF7 163 aa15.63■□□□□ 0.09
CKAP4-202ENST00000552828 DDX10Q13206 875 aaKnown RBP15.63■□□□□ 0.09
CKAP4-202ENST00000552828 SUSD4Q5VX71 490 aa15.63■□□□□ 0.09
CKAP4-202ENST00000552828 JDP2Q8WYK2 163 aa15.63■□□□□ 0.09
CKAP4-202ENST00000552828 CRAMP1Q96RY5 1269 aa15.63■□□□□ 0.09
CKAP4-202ENST00000552828 NTSR2O95665 410 aa15.62■□□□□ 0.09
CKAP4-202ENST00000552828 MYL6BP14649 208 aa15.62■□□□□ 0.09
CKAP4-202ENST00000552828 EAPPQ56P03 285 aaPredicted RBP15.62■□□□□ 0.09
CKAP4-202ENST00000552828 GIGYF2Q6Y7W6 1299 aaKnown RBP15.62■□□□□ 0.09
CKAP4-202ENST00000552828 LRP10Q7Z4F1 713 aa15.62■□□□□ 0.09
CKAP4-202ENST00000552828 RPGRQ92834 1020 aaKnown RBP15.62■□□□□ 0.09
CKAP4-202ENST00000552828 ZBTB3Q9H5J0 574 aa15.62■□□□□ 0.09
CKAP4-202ENST00000552828 ADAMTSL1Q8N6G6 1762 aa15.62■□□□□ 0.09
CKAP4-202ENST00000552828 GPTP24298 496 aa15.61■□□□□ 0.09
CKAP4-202ENST00000552828 PDIA6Q15084 440 aa15.61■□□□□ 0.09
CKAP4-202ENST00000552828 RBM17Q96I25 401 aaKnown RBP15.61■□□□□ 0.09
CKAP4-202ENST00000552828 BABAM1Q9NWV8 329 aa15.61■□□□□ 0.09
CKAP4-202ENST00000552828 RNF123Q5XPI4 1314 aa15.61■□□□□ 0.09
CKAP4-202ENST00000552828 ZNF316A6NFI3 1004 aaPredicted RBP15.6■□□□□ 0.09
CKAP4-202ENST00000552828 VEGFBP49765 207 aa15.6■□□□□ 0.09
CKAP4-202ENST00000552828 PARP10Q53GL7 1025 aa15.6■□□□□ 0.09
CKAP4-202ENST00000552828 SLC10A5Q5PT55 438 aa15.6■□□□□ 0.09
CKAP4-202ENST00000552828 CNTROBQ8N137 903 aa15.6■□□□□ 0.09
CKAP4-202ENST00000552828 CLEC11AQ9Y240 323 aa15.6■□□□□ 0.09
CKAP4-202ENST00000552828 MAPK8IP3Q9UPT6 1336 aa15.6■□□□□ 0.09
CKAP4-202ENST00000552828 COL4A5P29400 1685 aa15.6■□□□□ 0.09
CKAP4-202ENST00000552828 CAPN15O75808 1086 aa15.59■□□□□ 0.09
CKAP4-202ENST00000552828 EIF6P56537 245 aaKnown RBP15.59■□□□□ 0.09
CKAP4-202ENST00000552828 C3orf67Q6ZVT6 689 aa15.59■□□□□ 0.09
CKAP4-202ENST00000552828 PPP1R42Q7Z4L9 355 aa15.59■□□□□ 0.09
CKAP4-202ENST00000552828 TSPYL4Q9UJ04 414 aa15.59■□□□□ 0.09
CKAP4-202ENST00000552828 NUP98P52948 1817 aa15.59■□□□□ 0.09
CKAP4-202ENST00000552828 DLG5Q8TDM6 1919 aa15.58■□□□□ 0.09
CKAP4-202ENST00000552828 RASSF10A6NK89 507 aa15.58■□□□□ 0.08
CKAP4-202ENST00000552828 PPEF1O14829 653 aaPredicted RBP15.58■□□□□ 0.08
CKAP4-202ENST00000552828 FOXN1O15353 648 aa15.58■□□□□ 0.08
CKAP4-202ENST00000552828 MAP1SQ66K74 1059 aaPredicted RBP15.58■□□□□ 0.08
CKAP4-202ENST00000552828 VPS33BQ9H267 617 aa15.58■□□□□ 0.08
CKAP4-202ENST00000552828 PRDM10Q9NQV6 1147 aa15.58■□□□□ 0.08
CKAP4-202ENST00000552828 SCNN1DP51172 638 aa15.57■□□□□ 0.08
CKAP4-202ENST00000552828 LARGE2Q8N3Y3 721 aa15.57■□□□□ 0.08
CKAP4-202ENST00000552828 NLRP3Q96P20 1036 aa15.57■□□□□ 0.08
CKAP4-202ENST00000552828 WBP1LQ9NX94 342 aa15.57■□□□□ 0.08
CKAP4-202ENST00000552828 ATP6V0A2Q9Y487 856 aa15.57■□□□□ 0.08
CKAP4-202ENST00000552828 RIPK4P57078 832 aa15.56■□□□□ 0.08
CKAP4-202ENST00000552828 PROSER3Q2NL68 480 aa15.56■□□□□ 0.08
CKAP4-202ENST00000552828 SLC51AQ86UW1 340 aa15.56■□□□□ 0.08
CKAP4-202ENST00000552828 UTP14AQ9BVJ6 771 aaKnown RBP15.56■□□□□ 0.08
CKAP4-202ENST00000552828 GJA3Q9Y6H8 435 aa15.56■□□□□ 0.08
CKAP4-202ENST00000552828 LMOD1P29536 600 aaPredicted RBP15.55■□□□□ 0.08
CKAP4-202ENST00000552828 CTCFP49711 727 aaPredicted RBP15.55■□□□□ 0.08
CKAP4-202ENST00000552828 RALBP1Q15311 655 aa15.55■□□□□ 0.08
CKAP4-202ENST00000552828 DEFB115Q30KQ5 88 aa15.55■□□□□ 0.08
CKAP4-202ENST00000552828 RTFDC1Q9BY42 306 aaPredicted RBP15.55■□□□□ 0.08
CKAP4-202ENST00000552828 DDX21Q9NR30 783 aaKnown RBP eCLIP15.55■□□□□ 0.08
CKAP4-202ENST00000552828 BBOX1O75936 387 aa15.54■□□□□ 0.08
CKAP4-202ENST00000552828 EIF2S2P20042 333 aaKnown RBP15.54■□□□□ 0.08
CKAP4-202ENST00000552828 TMPOP42166 694 aaKnown RBP15.54■□□□□ 0.08
CKAP4-202ENST00000552828 EPS15P42566 896 aa15.54■□□□□ 0.08
CKAP4-202ENST00000552828 USP50Q70EL3 339 aaPredicted RBP15.54■□□□□ 0.08
CKAP4-202ENST00000552828 NIM1KQ8IY84 436 aa15.54■□□□□ 0.08
CKAP4-202ENST00000552828 AIDAQ96BJ3 306 aa15.54■□□□□ 0.08
CKAP4-202ENST00000552828 ABCC4O15439 1325 aa15.53■□□□□ 0.08
CKAP4-202ENST00000552828 TCERG1O14776 1098 aaKnown RBP15.53■□□□□ 0.08
CKAP4-202ENST00000552828 LMOD3Q0VAK6 560 aa15.53■□□□□ 0.08
CKAP4-202ENST00000552828 HSP90AB3PQ58FF7 597 aa15.53■□□□□ 0.08
CKAP4-202ENST00000552828 NLRP10Q86W26 655 aa15.53■□□□□ 0.08
CKAP4-202ENST00000552828 TMX4Q9H1E5 349 aaPredicted RBP15.53■□□□□ 0.08
CKAP4-202ENST00000552828 LTBP1Q14766 1721 aa15.53■□□□□ 0.08
CKAP4-202ENST00000552828 WDR33Q9C0J8 1336 aaKnown RBP15.52■□□□□ 0.08
CKAP4-202ENST00000552828 PPIP5K2O43314 1243 aa15.52■□□□□ 0.08
CKAP4-202ENST00000552828 ANXA1P04083 346 aa15.52■□□□□ 0.08
CKAP4-202ENST00000552828 COPS6Q7L5N1 327 aa15.52■□□□□ 0.08
CKAP4-202ENST00000552828 SP8Q8IXZ3 490 aa15.52■□□□□ 0.08
CKAP4-202ENST00000552828 SUPT20HQ8NEM7 779 aa15.52■□□□□ 0.08
CKAP4-202ENST00000552828 ZNRF3Q9ULT6 936 aa15.52■□□□□ 0.08
CKAP4-202ENST00000552828 CHL1O00533 1208 aa15.51■□□□□ 0.07
CKAP4-202ENST00000552828 CXCL9Q07325 125 aa15.51■□□□□ 0.07
CKAP4-202ENST00000552828 TCIRG1Q13488 830 aa15.51■□□□□ 0.07
CKAP4-202ENST00000552828 AOC3Q16853 763 aa15.51■□□□□ 0.07
CKAP4-202ENST00000552828 XAGE3Q8WTP9 111 aa15.51■□□□□ 0.07
CKAP4-202ENST00000552828 GPRC5DQ9NZD1 345 aa15.51■□□□□ 0.07
CKAP4-202ENST00000552828 MAP2K1Q02750 393 aaPredicted RBP15.5■□□□□ 0.07
CKAP4-202ENST00000552828 CST9Q5W186 159 aa15.5■□□□□ 0.07
CKAP4-202ENST00000552828 ADARB2Q9NS39 739 aaKnown RBP15.5■□□□□ 0.07
CKAP4-202ENST00000552828 ABT1Q9ULW3 272 aaKnown RBP15.5■□□□□ 0.07
CKAP4-202ENST00000552828 HCLS1P14317 486 aaPredicted RBP15.49■□□□□ 0.07
CKAP4-202ENST00000552828 KIAA2012Q0VF49 1180 aa15.49■□□□□ 0.07
CKAP4-202ENST00000552828 DPP8Q6V1X1 898 aaPredicted RBP15.49■□□□□ 0.07
CKAP4-202ENST00000552828 PGAP2Q9UHJ9 254 aa15.49■□□□□ 0.07
CKAP4-202ENST00000552828 TRMT112Q9UI30 125 aaKnown RBP15.49■□□□□ 0.07
CKAP4-202ENST00000552828 SH3TC1Q8TE82 1336 aa15.48■□□□□ 0.07
CKAP4-202ENST00000552828 CDHR2Q9BYE9 1310 aa15.48■□□□□ 0.07
CKAP4-202ENST00000552828 LBX1P52954 281 aa15.48■□□□□ 0.07
CKAP4-202ENST00000552828 FMR1Q06787 632 aaKnown RBP eCLIP15.48■□□□□ 0.07
CKAP4-202ENST00000552828 AIMP1Q12904 312 aaKnown RBP15.48■□□□□ 0.07
CKAP4-202ENST00000552828 GRAPQ13588 217 aa15.48■□□□□ 0.07
CKAP4-202ENST00000552828 DDX46Q7L014 1031 aaKnown RBP15.48■□□□□ 0.07
CKAP4-202ENST00000552828 TMC4Q7Z404 712 aa15.48■□□□□ 0.07
CKAP4-202ENST00000552828 MPNDQ8N594 471 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 1644.3 ms