RNA–Protein interactions for RNA: ENST00000544872.1

CIT-216, Transcript of citron rho-interacting serine/threonine kinase, humanhuman

TSL 4

Gene CIT, Length 524 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIT-216ENST00000544872 TRAF5O00463 557 aa12.25□□□□□ -0.45
CIT-216ENST00000544872 HOXB7P09629 217 aa12.25□□□□□ -0.45
CIT-216ENST00000544872 NOGQ13253 232 aa12.25□□□□□ -0.45
CIT-216ENST00000544872 ZNF622Q969S3 477 aaKnown RBP eCLIP12.25□□□□□ -0.45
CIT-216ENST00000544872 SOS1Q07889 1333 aaPredicted RBP12.25□□□□□ -0.45
CIT-216ENST00000544872 DICER1Q9UPY3 1922 aaKnown RBP12.25□□□□□ -0.45
CIT-216ENST00000544872 KCNQ3O43525 872 aa12.24□□□□□ -0.45
CIT-216ENST00000544872 TRPA1O75762 1119 aa12.24□□□□□ -0.45
CIT-216ENST00000544872 EIF2S2P20042 333 aaKnown RBP12.24□□□□□ -0.45
CIT-216ENST00000544872 IL6STP40189 918 aaPredicted RBP12.24□□□□□ -0.45
CIT-216ENST00000544872 PKN2Q16513 984 aaKnown RBP12.24□□□□□ -0.45
CIT-216ENST00000544872 SAPCD2Q86UD0 394 aa12.24□□□□□ -0.45
CIT-216ENST00000544872 HDAC9Q9UKV0 1011 aa12.24□□□□□ -0.45
CIT-216ENST00000544872 ZNF652Q9Y2D9 606 aa12.24□□□□□ -0.45
CIT-216ENST00000544872 MRC1P22897 1456 aa12.23□□□□□ -0.45
CIT-216ENST00000544872 E9PSI1 815 aa12.23□□□□□ -0.45
CIT-216ENST00000544872 SLC4A9Q96Q91 983 aa12.23□□□□□ -0.45
CIT-216ENST00000544872 STK31Q9BXU1 1019 aa12.23□□□□□ -0.45
CIT-216ENST00000544872 MBIPQ9NS73 344 aa12.23□□□□□ -0.45
CIT-216ENST00000544872 ERBB4Q15303 1308 aa12.22□□□□□ -0.45
CIT-216ENST00000544872 NPHP1O15259 732 aa12.22□□□□□ -0.45
CIT-216ENST00000544872 CELF2O95319 508 aaKnown RBP12.22□□□□□ -0.45
CIT-216ENST00000544872 HNRNPUQ00839 825 aaKnown RBP eCLIP12.22□□□□□ -0.45
CIT-216ENST00000544872 HDGFL1Q5TGJ6 251 aa12.22□□□□□ -0.45
CIT-216ENST00000544872 CCDC30Q5VVM6 783 aa12.22□□□□□ -0.45
CIT-216ENST00000544872 INTS5Q6P9B9 1019 aaKnown RBP12.22□□□□□ -0.45
CIT-216ENST00000544872 KIF6Q6ZMV9 814 aa12.22□□□□□ -0.45
CIT-216ENST00000544872 ZNF408Q9H9D4 720 aa12.22□□□□□ -0.45
CIT-216ENST00000544872 SAGE1Q9NXZ1 904 aa12.22□□□□□ -0.45
CIT-216ENST00000544872 USP16Q9Y5T5 823 aa12.22□□□□□ -0.45
CIT-216ENST00000544872 ZNF541Q9H0D2 1346 aa12.21□□□□□ -0.45
CIT-216ENST00000544872 LTBP3Q9NS15 1303 aa12.21□□□□□ -0.45
CIT-216ENST00000544872 A1BGP04217 495 aa12.21□□□□□ -0.45
CIT-216ENST00000544872 DUSP27Q5VZP5 1158 aa12.21□□□□□ -0.45
CIT-216ENST00000544872 ZIC5Q96T25 663 aa12.21□□□□□ -0.45
CIT-216ENST00000544872 COL25A1Q9BXS0 654 aaPredicted RBP12.21□□□□□ -0.45
CIT-216ENST00000544872 DBF4Q9UBU7 674 aaPredicted RBP12.21□□□□□ -0.45
CIT-216ENST00000544872 ADAMTSL1Q8N6G6 1762 aa12.2□□□□□ -0.46
CIT-216ENST00000544872 ZNF853P0CG23 659 aa12.2□□□□□ -0.46
CIT-216ENST00000544872 LMOD1P29536 600 aaPredicted RBP12.2□□□□□ -0.46
CIT-216ENST00000544872 HHIPL1Q96JK4 782 aa12.2□□□□□ -0.46
CIT-216ENST00000544872 HYPKQ9NX55 129 aa12.2□□□□□ -0.46
CIT-216ENST00000544872 ZBTB1Q9Y2K1 713 aa12.2□□□□□ -0.46
CIT-216ENST00000544872 SZT2Q5T011 3432 aa12.2□□□□□ -0.46
CIT-216ENST00000544872 USP42Q9H9J4 1324 aaKnown RBP12.19□□□□□ -0.46
CIT-216ENST00000544872 ITGB4P16144 1822 aa12.19□□□□□ -0.46
CIT-216ENST00000544872 ELL2O00472 640 aaPredicted RBP12.19□□□□□ -0.46
CIT-216ENST00000544872 DDX58O95786 925 aaKnown RBP12.19□□□□□ -0.46
CIT-216ENST00000544872 MYL6BP14649 208 aa12.19□□□□□ -0.46
CIT-216ENST00000544872 EIF5P55010 431 aaKnown RBP12.19□□□□□ -0.46
CIT-216ENST00000544872 DZIP3Q86Y13 1208 aaKnown RBP12.19□□□□□ -0.46
CIT-216ENST00000544872 NARFQ9UHQ1 456 aa12.19□□□□□ -0.46
CIT-216ENST00000544872 TWISTNBQ3B726 338 aaPredicted RBP12.18□□□□□ -0.46
CIT-216ENST00000544872 SYNE4Q8N205 404 aa12.18□□□□□ -0.46
CIT-216ENST00000544872 NECTIN2Q92692 538 aa12.18□□□□□ -0.46
CIT-216ENST00000544872 TSR2Q969E8 191 aaKnown RBP12.18□□□□□ -0.46
CIT-216ENST00000544872 RNF186Q9NXI6 227 aa12.18□□□□□ -0.46
CIT-216ENST00000544872 TRPM7Q96QT4 1865 aa12.18□□□□□ -0.46
CIT-216ENST00000544872 TM4SF1P30408 202 aa12.17□□□□□ -0.46
CIT-216ENST00000544872 CLEC4GQ6UXB4 293 aa12.17□□□□□ -0.46
CIT-216ENST00000544872 SETDB2Q96T68 719 aa12.17□□□□□ -0.46
CIT-216ENST00000544872 TBC1D2BQ9UPU7 963 aa12.17□□□□□ -0.46
CIT-216ENST00000544872 CEP290O15078 2479 aa12.16□□□□□ -0.46
CIT-216ENST00000544872 PRAMEF22A3QJZ6 481 aa12.16□□□□□ -0.46
CIT-216ENST00000544872 RGL2O15211 777 aa12.16□□□□□ -0.46
CIT-216ENST00000544872 GTF2E1P29083 439 aaPredicted RBP12.16□□□□□ -0.46
CIT-216ENST00000544872 HSP90AB3PQ58FF7 597 aa12.16□□□□□ -0.46
CIT-216ENST00000544872 SOGA3Q5TF21 947 aa12.16□□□□□ -0.46
CIT-216ENST00000544872 USPL1Q5W0Q7 1092 aa12.16□□□□□ -0.46
CIT-216ENST00000544872 CHRDL2Q6WN34 429 aa12.16□□□□□ -0.46
CIT-216ENST00000544872 ZNF428Q96B54 188 aa12.16□□□□□ -0.46
CIT-216ENST00000544872 PRDM6Q9NQX0 595 aa12.16□□□□□ -0.46
CIT-216ENST00000544872 COL15A1P39059 1388 aa12.16□□□□□ -0.46
CIT-216ENST00000544872 FANCIQ9NVI1 1328 aa12.15□□□□□ -0.46
CIT-216ENST00000544872 ERVV-1B6SEH8 477 aa12.15□□□□□ -0.46
CIT-216ENST00000544872 SERPINB2P05120 415 aa12.15□□□□□ -0.46
CIT-216ENST00000544872 AIMP1Q12904 312 aaKnown RBP12.15□□□□□ -0.46
CIT-216ENST00000544872 C8orf58Q8NAV2 365 aa12.15□□□□□ -0.46
CIT-216ENST00000544872 GJA3Q9Y6H8 435 aa12.15□□□□□ -0.46
CIT-216ENST00000544872 FER1L6Q2WGJ9 1857 aa12.14□□□□□ -0.47
CIT-216ENST00000544872 CT47B1P0C2W7 299 aaPredicted RBP12.14□□□□□ -0.47
CIT-216ENST00000544872 HUNKP57058 714 aa12.14□□□□□ -0.47
CIT-216ENST00000544872 KIF23Q02241 960 aaPredicted RBP12.14□□□□□ -0.47
CIT-216ENST00000544872 EXOSC9Q06265 439 aaKnown RBP12.14□□□□□ -0.47
CIT-216ENST00000544872 FBXO46Q6PJ61 603 aaPredicted RBP12.14□□□□□ -0.47
CIT-216ENST00000544872 RIC3Q7Z5B4 369 aa12.14□□□□□ -0.47
CIT-216ENST00000544872 GPC2Q8N158 579 aa12.14□□□□□ -0.47
CIT-216ENST00000544872 CHPF2Q9P2E5 772 aa12.14□□□□□ -0.47
CIT-216ENST00000544872 SCN11AQ9UI33 1791 aa12.14□□□□□ -0.47
CIT-216ENST00000544872 DLEC1Q9Y238 1755 aa12.14□□□□□ -0.47
CIT-216ENST00000544872 POTEFA5A3E0 1075 aa12.13□□□□□ -0.47
CIT-216ENST00000544872 SLC4A2P04920 1241 aa12.13□□□□□ -0.47
CIT-216ENST00000544872 HSP90B1P14625 803 aaKnown RBP12.13□□□□□ -0.47
CIT-216ENST00000544872 COL9A1P20849 921 aa12.13□□□□□ -0.47
CIT-216ENST00000544872 PIP4K2AP48426 406 aaPredicted RBP12.13□□□□□ -0.47
CIT-216ENST00000544872 SLFN5Q08AF3 891 aa12.13□□□□□ -0.47
CIT-216ENST00000544872 NFIXQ14938 502 aa12.13□□□□□ -0.47
CIT-216ENST00000544872 TPTE2Q6XPS3 522 aa12.13□□□□□ -0.47
CIT-216ENST00000544872 ANKRD13DQ6ZTN6 518 aa12.13□□□□□ -0.47
CIT-216ENST00000544872 COPS6Q7L5N1 327 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms