RNA–Protein interactions for RNA: ENST00000540183.1

SEMA4D-222, Transcript of semaphorin 4D, human

TSL 3

Gene SEMA4D, Length 176 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SEMA4D-222	ENST00000540183	FZD9	O00144	591 aa		18.82	■□□□□ 0.6
SEMA4D-222	ENST00000540183	TCERG1	O14776	1098 aa	Known RBP	18.82	■□□□□ 0.6
SEMA4D-222	ENST00000540183	MAPK8IP3	Q9UPT6	1336 aa		18.81	■□□□□ 0.6
SEMA4D-222	ENST00000540183	ITGBL1	O95965	494 aa	Predicted RBP	18.81	■□□□□ 0.6
SEMA4D-222	ENST00000540183	ANXA1	P04083	346 aa		18.81	■□□□□ 0.6
SEMA4D-222	ENST00000540183	PROSER3	Q2NL68	480 aa		18.81	■□□□□ 0.6
SEMA4D-222	ENST00000540183	ZNF34	Q8IZ26	560 aa		18.81	■□□□□ 0.6
SEMA4D-222	ENST00000540183	HACL1	Q9UJ83	578 aa		18.81	■□□□□ 0.6
SEMA4D-222	ENST00000540183	CLEC11A	Q9Y240	323 aa		18.81	■□□□□ 0.6
SEMA4D-222	ENST00000540183	NTSR2	O95665	410 aa		18.8	■□□□□ 0.6
SEMA4D-222	ENST00000540183	EPHX2	P34913	555 aa		18.8	■□□□□ 0.6
SEMA4D-222	ENST00000540183	RPGR	Q92834	1020 aa	Known RBP	18.8	■□□□□ 0.6
SEMA4D-222	ENST00000540183	RIC1	Q4ADV7	1423 aa		18.8	■□□□□ 0.6
SEMA4D-222	ENST00000540183	CNTNAP1	P78357	1384 aa		18.8	■□□□□ 0.6
SEMA4D-222	ENST00000540183	IBTK	Q9P2D0	1353 aa	Predicted RBP	18.8	■□□□□ 0.6
SEMA4D-222	ENST00000540183	EIF2S2	P20042	333 aa	Known RBP	18.79	■□□□□ 0.6
SEMA4D-222	ENST00000540183	HOXA10	P31260	410 aa	Predicted RBP	18.79	■□□□□ 0.6
SEMA4D-222	ENST00000540183	PDIA6	Q15084	440 aa		18.79	■□□□□ 0.6
SEMA4D-222	ENST00000540183	GIGYF2	Q6Y7W6	1299 aa	Known RBP	18.79	■□□□□ 0.6
SEMA4D-222	ENST00000540183	LRP10	Q7Z4F1	713 aa		18.79	■□□□□ 0.6
SEMA4D-222	ENST00000540183	PSMD1	Q99460	953 aa		18.79	■□□□□ 0.6
SEMA4D-222	ENST00000540183	TSPYL4	Q9UJ04	414 aa		18.79	■□□□□ 0.6
SEMA4D-222	ENST00000540183	TRPM7	Q96QT4	1865 aa		18.78	■□□□□ 0.6
SEMA4D-222	ENST00000540183	MAP1S	Q66K74	1059 aa	Predicted RBP	18.78	■□□□□ 0.6
SEMA4D-222	ENST00000540183	GJA3	Q9Y6H8	435 aa		18.78	■□□□□ 0.6
SEMA4D-222	ENST00000540183	RIPK4	P57078	832 aa		18.77	■□□□□ 0.6
SEMA4D-222	ENST00000540183	GPC2	Q8N158	579 aa		18.77	■□□□□ 0.6
SEMA4D-222	ENST00000540183	NECTIN2	Q92692	538 aa		18.77	■□□□□ 0.6
SEMA4D-222	ENST00000540183	PPEF1	O14829	653 aa	Predicted RBP	18.76	■□□□□ 0.59
SEMA4D-222	ENST00000540183	VEGFB	P49765	207 aa		18.76	■□□□□ 0.59
SEMA4D-222	ENST00000540183	JDP2	Q8WYK2	163 aa		18.76	■□□□□ 0.59
SEMA4D-222	ENST00000540183	RBM17	Q96I25	401 aa	Known RBP	18.76	■□□□□ 0.59
SEMA4D-222	ENST00000540183	ERBB4	Q15303	1308 aa		18.75	■□□□□ 0.59
SEMA4D-222	ENST00000540183	TMEM88B	A6NKF7	163 aa		18.75	■□□□□ 0.59
SEMA4D-222	ENST00000540183	FOXN1	O15353	648 aa		18.75	■□□□□ 0.59
SEMA4D-222	ENST00000540183	FMR1	Q06787	632 aa	Known RBP eCLIP	18.75	■□□□□ 0.59
SEMA4D-222	ENST00000540183	ZNF428	Q96B54	188 aa		18.75	■□□□□ 0.59
SEMA4D-222	ENST00000540183	CRAMP1	Q96RY5	1269 aa		18.75	■□□□□ 0.59
SEMA4D-222	ENST00000540183	DDX60	Q8IY21	1712 aa	Known RBP	18.74	■□□□□ 0.59
SEMA4D-222	ENST00000540183	EIF6	P56537	245 aa	Known RBP	18.74	■□□□□ 0.59
SEMA4D-222	ENST00000540183	KRT24	Q2M2I5	525 aa		18.74	■□□□□ 0.59
SEMA4D-222	ENST00000540183	CC2D2B	Q6DHV5	1058 aa		18.74	■□□□□ 0.59
SEMA4D-222	ENST00000540183	CNTROB	Q8N137	903 aa		18.74	■□□□□ 0.59
SEMA4D-222	ENST00000540183	LARGE2	Q8N3Y3	721 aa		18.74	■□□□□ 0.59
SEMA4D-222	ENST00000540183	PNN	Q9H307	717 aa	Known RBP	18.74	■□□□□ 0.59
SEMA4D-222	ENST00000540183	TMPO	P42166	694 aa	Known RBP	18.73	■□□□□ 0.59
SEMA4D-222	ENST00000540183	EPS15	P42566	896 aa		18.73	■□□□□ 0.59
SEMA4D-222	ENST00000540183	SCNN1D	P51172	638 aa		18.73	■□□□□ 0.59
SEMA4D-222	ENST00000540183	PPP1R42	Q7Z4L9	355 aa		18.73	■□□□□ 0.59
SEMA4D-222	ENST00000540183	PNMA8A	Q86V59	439 aa	Predicted RBP	18.73	■□□□□ 0.59
SEMA4D-222	ENST00000540183	CCDC146	Q8IYE0	955 aa		18.73	■□□□□ 0.59
SEMA4D-222	ENST00000540183	ABCC4	O15439	1325 aa		18.73	■□□□□ 0.59
SEMA4D-222	ENST00000540183	AIMP1	Q12904	312 aa	Known RBP	18.72	■□□□□ 0.59
SEMA4D-222	ENST00000540183	PARP10	Q53GL7	1025 aa		18.72	■□□□□ 0.59
SEMA4D-222	ENST00000540183	UTP14A	Q9BVJ6	771 aa	Known RBP	18.72	■□□□□ 0.59
SEMA4D-222	ENST00000540183	NEUROD2	Q15784	382 aa		18.71	■□□□□ 0.59
SEMA4D-222	ENST00000540183	AOC3	Q16853	763 aa		18.71	■□□□□ 0.59
SEMA4D-222	ENST00000540183	COPS6	Q7L5N1	327 aa		18.71	■□□□□ 0.59
SEMA4D-222	ENST00000540183	XAGE3	Q8WTP9	111 aa		18.71	■□□□□ 0.59
SEMA4D-222	ENST00000540183	NLRP3	Q96P20	1036 aa		18.71	■□□□□ 0.59
SEMA4D-222	ENST00000540183	COL4A1	P02462	1669 aa		18.7	■□□□□ 0.58
SEMA4D-222	ENST00000540183	PPIP5K2	O43314	1243 aa		18.7	■□□□□ 0.58
SEMA4D-222	ENST00000540183	HCLS1	P14317	486 aa	Predicted RBP	18.7	■□□□□ 0.58
SEMA4D-222	ENST00000540183	SLC10A5	Q5PT55	438 aa		18.7	■□□□□ 0.58
SEMA4D-222	ENST00000540183	LMOD1	P29536	600 aa	Predicted RBP	18.69	■□□□□ 0.58
SEMA4D-222	ENST00000540183	NLRP10	Q86W26	655 aa		18.69	■□□□□ 0.58
SEMA4D-222	ENST00000540183	NIM1K	Q8IY84	436 aa		18.69	■□□□□ 0.58
SEMA4D-222	ENST00000540183	ATP6V0A2	Q9Y487	856 aa		18.69	■□□□□ 0.58
SEMA4D-222	ENST00000540183	LRRC37A	A6NMS7	1700 aa		18.69	■□□□□ 0.58
SEMA4D-222	ENST00000540183	RALBP1	Q15311	655 aa		18.68	■□□□□ 0.58
SEMA4D-222	ENST00000540183	LAS1L	Q9Y4W2	734 aa	Known RBP	18.68	■□□□□ 0.58
SEMA4D-222	ENST00000540183	DUOX1	Q9NRD9	1551 aa		18.68	■□□□□ 0.58
SEMA4D-222	ENST00000540183	RASSF10	A6NK89	507 aa		18.67	■□□□□ 0.58
SEMA4D-222	ENST00000540183	TRAF5	O00463	557 aa		18.67	■□□□□ 0.58
SEMA4D-222	ENST00000540183	DEFB115	Q30KQ5	88 aa		18.67	■□□□□ 0.58
SEMA4D-222	ENST00000540183	GRIPAP1	Q4V328	841 aa		18.67	■□□□□ 0.58
SEMA4D-222	ENST00000540183	DDX21	Q9NR30	783 aa	Known RBP eCLIP	18.67	■□□□□ 0.58
SEMA4D-222	ENST00000540183	BABAM1	Q9NWV8	329 aa		18.67	■□□□□ 0.58
SEMA4D-222	ENST00000540183	ABT1	Q9ULW3	272 aa	Known RBP	18.67	■□□□□ 0.58
SEMA4D-222	ENST00000540183	TRIM35	Q9UPQ4	493 aa		18.67	■□□□□ 0.58
SEMA4D-222	ENST00000540183	POLR2A	P24928	1970 aa	Known RBP	18.67	■□□□□ 0.58
SEMA4D-222	ENST00000540183	THSD7B	Q9C0I4	1608 aa		18.67	■□□□□ 0.58
SEMA4D-222	ENST00000540183	DDX10	Q13206	875 aa	Known RBP	18.66	■□□□□ 0.58
SEMA4D-222	ENST00000540183	WBP1L	Q9NX94	342 aa		18.66	■□□□□ 0.58
SEMA4D-222	ENST00000540183	CHPF2	Q9P2E5	772 aa		18.66	■□□□□ 0.58
SEMA4D-222	ENST00000540183	CXCL9	Q07325	125 aa		18.65	■□□□□ 0.58
SEMA4D-222	ENST00000540183	LMOD3	Q0VAK6	560 aa		18.65	■□□□□ 0.58
SEMA4D-222	ENST00000540183	TCIRG1	Q13488	830 aa		18.65	■□□□□ 0.58
SEMA4D-222	ENST00000540183	TRMT112	Q9UI30	125 aa	Known RBP	18.65	■□□□□ 0.58
SEMA4D-222	ENST00000540183	WDR33	Q9C0J8	1336 aa	Known RBP	18.65	■□□□□ 0.58
SEMA4D-222	ENST00000540183	CHL1	O00533	1208 aa		18.64	■□□□□ 0.57
SEMA4D-222	ENST00000540183	CTCF	P49711	727 aa	Predicted RBP	18.64	■□□□□ 0.57
SEMA4D-222	ENST00000540183	LBX1	P52954	281 aa		18.64	■□□□□ 0.57
SEMA4D-222	ENST00000540183	DPP8	Q6V1X1	898 aa	Predicted RBP	18.64	■□□□□ 0.57
SEMA4D-222	ENST00000540183	AIDA	Q96BJ3	306 aa		18.64	■□□□□ 0.57
SEMA4D-222	ENST00000540183	RTFDC1	Q9BY42	306 aa	Predicted RBP	18.64	■□□□□ 0.57
SEMA4D-222	ENST00000540183	MYBBP1A	Q9BQG0	1328 aa	Known RBP	18.64	■□□□□ 0.57
SEMA4D-222	ENST00000540183	GMPS	P49915	693 aa	Predicted RBP	18.63	■□□□□ 0.57
SEMA4D-222	ENST00000540183	HSP90AB3P	Q58FF7	597 aa		18.63	■□□□□ 0.57
SEMA4D-222	ENST00000540183	CST9	Q5W186	159 aa		18.63	■□□□□ 0.57

Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms