RNA–Protein interactions for RNA: ENST00000538470.2

DDB1-212, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 2

Gene DDB1, Length 858 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-212ENST00000538470 LRRC37AA6NMS7 1700 aa11.32□□□□□ -0.6
DDB1-212ENST00000538470 DDX60Q8IY21 1712 aaKnown RBP11.32□□□□□ -0.6
DDB1-212ENST00000538470 DDNO94850 711 aaPredicted RBP11.31□□□□□ -0.6
DDB1-212ENST00000538470 HOXB7P09629 217 aa11.31□□□□□ -0.6
DDB1-212ENST00000538470 IARSP41252 1262 aaKnown RBP11.31□□□□□ -0.6
DDB1-212ENST00000538470 SUSD4Q5VX71 490 aa11.31□□□□□ -0.6
DDB1-212ENST00000538470 CHADLQ6NUI6 762 aa11.31□□□□□ -0.6
DDB1-212ENST00000538470 RBM17Q96I25 401 aaKnown RBP11.31□□□□□ -0.6
DDB1-212ENST00000538470 CRAMP1Q96RY5 1269 aa11.31□□□□□ -0.6
DDB1-212ENST00000538470 ZNF277Q9NRM2 450 aaPredicted RBP11.31□□□□□ -0.6
DDB1-212ENST00000538470 EIF2S2P20042 333 aaKnown RBP11.3□□□□□ -0.6
DDB1-212ENST00000538470 HTRA3P83110 453 aa11.3□□□□□ -0.6
DDB1-212ENST00000538470 LDHDQ86WU2 507 aa11.3□□□□□ -0.6
DDB1-212ENST00000538470 DDX21Q9NR30 783 aaKnown RBP eCLIP11.3□□□□□ -0.6
DDB1-212ENST00000538470 ZNF541Q9H0D2 1346 aa11.3□□□□□ -0.6
DDB1-212ENST00000538470 FZD9O00144 591 aa11.29□□□□□ -0.6
DDB1-212ENST00000538470 CHL1O00533 1208 aa11.29□□□□□ -0.6
DDB1-212ENST00000538470 PPEF1O14829 653 aaPredicted RBP11.29□□□□□ -0.6
DDB1-212ENST00000538470 PROSER3Q2NL68 480 aa11.29□□□□□ -0.6
DDB1-212ENST00000538470 OLFM4Q6UX06 510 aa11.29□□□□□ -0.6
DDB1-212ENST00000538470 CCDC146Q8IYE0 955 aa11.29□□□□□ -0.6
DDB1-212ENST00000538470 SYNE4Q8N205 404 aa11.29□□□□□ -0.6
DDB1-212ENST00000538470 UTP14AQ9BVJ6 771 aaKnown RBP11.29□□□□□ -0.6
DDB1-212ENST00000538470 COL4A5P29400 1685 aa11.29□□□□□ -0.6
DDB1-212ENST00000538470 SLC10A5Q5PT55 438 aa11.28□□□□□ -0.6
DDB1-212ENST00000538470 GPC2Q8N158 579 aa11.28□□□□□ -0.6
DDB1-212ENST00000538470 JDP2Q8WYK2 163 aa11.28□□□□□ -0.6
DDB1-212ENST00000538470 NLRP3Q96P20 1036 aa11.28□□□□□ -0.6
DDB1-212ENST00000538470 TMX4Q9H1E5 349 aaPredicted RBP11.28□□□□□ -0.6
DDB1-212ENST00000538470 TAF1DQ9H5J8 278 aaPredicted RBP11.28□□□□□ -0.6
DDB1-212ENST00000538470 PRKRIP1Q9H875 184 aaPredicted RBP11.28□□□□□ -0.6
DDB1-212ENST00000538470 HACL1Q9UJ83 578 aa11.28□□□□□ -0.6
DDB1-212ENST00000538470 TRIM35Q9UPQ4 493 aa11.28□□□□□ -0.6
DDB1-212ENST00000538470 LTBP1Q14766 1721 aa11.27□□□□□ -0.61
DDB1-212ENST00000538470 ANXA1P04083 346 aa11.27□□□□□ -0.61
DDB1-212ENST00000538470 NEUROD2Q15784 382 aa11.27□□□□□ -0.61
DDB1-212ENST00000538470 PNMA8AQ86V59 439 aaPredicted RBP11.27□□□□□ -0.61
DDB1-212ENST00000538470 XAGE3Q8WTP9 111 aa11.27□□□□□ -0.61
DDB1-212ENST00000538470 VPS33BQ9H267 617 aa11.27□□□□□ -0.61
DDB1-212ENST00000538470 CREBZFQ9NS37 354 aa11.27□□□□□ -0.61
DDB1-212ENST00000538470 TRPM7Q96QT4 1865 aa11.27□□□□□ -0.61
DDB1-212ENST00000538470 EPHX2P34913 555 aa11.26□□□□□ -0.61
DDB1-212ENST00000538470 EIF6P56537 245 aaKnown RBP11.26□□□□□ -0.61
DDB1-212ENST00000538470 CALD1Q05682 793 aaKnown RBP11.26□□□□□ -0.61
DDB1-212ENST00000538470 HDGFL1Q5TGJ6 251 aa11.26□□□□□ -0.61
DDB1-212ENST00000538470 COPS6Q7L5N1 327 aa11.26□□□□□ -0.61
DDB1-212ENST00000538470 NLRP10Q86W26 655 aa11.26□□□□□ -0.61
DDB1-212ENST00000538470 CFAP44Q96MT7 982 aa11.26□□□□□ -0.61
DDB1-212ENST00000538470 CHPF2Q9P2E5 772 aa11.26□□□□□ -0.61
DDB1-212ENST00000538470 ADAMTS8Q9UP79 889 aa11.26□□□□□ -0.61
DDB1-212ENST00000538470 ABCC4O15439 1325 aa11.26□□□□□ -0.61
DDB1-212ENST00000538470 SH3TC1Q8TE82 1336 aa11.26□□□□□ -0.61
DDB1-212ENST00000538470 PASKQ96RG2 1323 aa11.26□□□□□ -0.61
DDB1-212ENST00000538470 TAF1P21675 1872 aa11.25□□□□□ -0.61
DDB1-212ENST00000538470 DUOX1Q9NRD9 1551 aa11.25□□□□□ -0.61
DDB1-212ENST00000538470 POTEIP0CG38 1075 aa11.25□□□□□ -0.61
DDB1-212ENST00000538470 POTEJP0CG39 1038 aa11.25□□□□□ -0.61
DDB1-212ENST00000538470 AIMP1Q12904 312 aaKnown RBP11.25□□□□□ -0.61
DDB1-212ENST00000538470 TCIRG1Q13488 830 aa11.25□□□□□ -0.61
DDB1-212ENST00000538470 KRT24Q2M2I5 525 aa11.25□□□□□ -0.61
DDB1-212ENST00000538470 C3orf67Q6ZVT6 689 aa11.25□□□□□ -0.61
DDB1-212ENST00000538470 TMC4Q7Z404 712 aa11.25□□□□□ -0.61
DDB1-212ENST00000538470 LARGE2Q8N3Y3 721 aa11.25□□□□□ -0.61
DDB1-212ENST00000538470 SUPT20HQ8NEM7 779 aa11.25□□□□□ -0.61
DDB1-212ENST00000538470 PLBD2Q8NHP8 589 aa11.25□□□□□ -0.61
DDB1-212ENST00000538470 NECTIN2Q92692 538 aa11.25□□□□□ -0.61
DDB1-212ENST00000538470 DBF4Q9UBU7 674 aaPredicted RBP11.25□□□□□ -0.61
DDB1-212ENST00000538470 ATP6V0A2Q9Y487 856 aa11.25□□□□□ -0.61
DDB1-212ENST00000538470 LAS1LQ9Y4W2 734 aaKnown RBP11.25□□□□□ -0.61
DDB1-212ENST00000538470 LMOD1P29536 600 aaPredicted RBP11.24□□□□□ -0.61
DDB1-212ENST00000538470 EAPPQ56P03 285 aaPredicted RBP11.24□□□□□ -0.61
DDB1-212ENST00000538470 NIM1KQ8IY84 436 aa11.24□□□□□ -0.61
DDB1-212ENST00000538470 RTFDC1Q9BY42 306 aaPredicted RBP11.24□□□□□ -0.61
DDB1-212ENST00000538470 IFT57Q9NWB7 429 aa11.24□□□□□ -0.61
DDB1-212ENST00000538470 HYPKQ9NX55 129 aa11.24□□□□□ -0.61
DDB1-212ENST00000538470 TRMT112Q9UI30 125 aaKnown RBP11.24□□□□□ -0.61
DDB1-212ENST00000538470 PCNTO95613 3336 aa11.24□□□□□ -0.61
DDB1-212ENST00000538470 CNTNAP1P78357 1384 aa11.24□□□□□ -0.61
DDB1-212ENST00000538470 THSD7BQ9C0I4 1608 aa11.24□□□□□ -0.61
DDB1-212ENST00000538470 PPIP5K2O43314 1243 aa11.23□□□□□ -0.61
DDB1-212ENST00000538470 BBOX1O75936 387 aa11.23□□□□□ -0.61
DDB1-212ENST00000538470 ZNF853P0CG23 659 aa11.23□□□□□ -0.61
DDB1-212ENST00000538470 GRAPQ13588 217 aa11.23□□□□□ -0.61
DDB1-212ENST00000538470 DDX46Q7L014 1031 aaKnown RBP11.23□□□□□ -0.61
DDB1-212ENST00000538470 GRAPLQ8TC17 118 aaPredicted RBP11.23□□□□□ -0.61
DDB1-212ENST00000538470 MBIPQ9NS73 344 aa11.23□□□□□ -0.61
DDB1-212ENST00000538470 CDHR2Q9BYE9 1310 aa11.23□□□□□ -0.61
DDB1-212ENST00000538470 MYH3P11055 1940 aa11.23□□□□□ -0.61
DDB1-212ENST00000538470 CACNA1FO60840 1977 aa11.23□□□□□ -0.61
DDB1-212ENST00000538470 HCLS1P14317 486 aaPredicted RBP11.22□□□□□ -0.61
DDB1-212ENST00000538470 GNAI1P63096 354 aa11.22□□□□□ -0.61
DDB1-212ENST00000538470 DUSP27Q5VZP5 1158 aa11.22□□□□□ -0.61
DDB1-212ENST00000538470 SP8Q8IXZ3 490 aa11.22□□□□□ -0.61
DDB1-212ENST00000538470 ISCA1Q9BUE6 129 aa11.22□□□□□ -0.61
DDB1-212ENST00000538470 CHMP4AQ9BY43 222 aa11.22□□□□□ -0.61
DDB1-212ENST00000538470 GJA3Q9Y6H8 435 aa11.22□□□□□ -0.61
DDB1-212ENST00000538470 TMEM88BA6NKF7 163 aa11.21□□□□□ -0.61
DDB1-212ENST00000538470 ITGBL1O95965 494 aaPredicted RBP11.21□□□□□ -0.61
DDB1-212ENST00000538470 HSPA1AP0DMV8 641 aaKnown RBP11.21□□□□□ -0.61
DDB1-212ENST00000538470 HSPA1BP0DMV9 641 aaKnown RBP11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms