RNA–Protein interactions for RNA: ENST00000535452.5

CLSTN3-205, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-205ENST00000535452 ARFGEF2Q9Y6D5 1785 aa17.25■□□□□ 0.35
CLSTN3-205ENST00000535452 SLX4Q8IY92 1834 aa17.24■□□□□ 0.35
CLSTN3-205ENST00000535452 DLG5Q8TDM6 1919 aa17.24■□□□□ 0.35
CLSTN3-205ENST00000535452 AIMP1Q12904 312 aaKnown RBP17.24■□□□□ 0.35
CLSTN3-205ENST00000535452 CCDC146Q8IYE0 955 aa17.24■□□□□ 0.35
CLSTN3-205ENST00000535452 LARGE2Q8N3Y3 721 aa17.24■□□□□ 0.35
CLSTN3-205ENST00000535452 PSMD1Q99460 953 aa17.24■□□□□ 0.35
CLSTN3-205ENST00000535452 CRY2Q49AN0 593 aa17.23■□□□□ 0.35
CLSTN3-205ENST00000535452 SUSD4Q5VX71 490 aa17.23■□□□□ 0.35
CLSTN3-205ENST00000535452 GPC2Q8N158 579 aa17.23■□□□□ 0.35
CLSTN3-205ENST00000535452 JMYQ8N9B5 988 aa17.23■□□□□ 0.35
CLSTN3-205ENST00000535452 C7orf43Q8WVR3 580 aa17.23■□□□□ 0.35
CLSTN3-205ENST00000535452 L3MBTL3Q96JM7 780 aaPredicted RBP17.23■□□□□ 0.35
CLSTN3-205ENST00000535452 CRAMP1Q96RY5 1269 aa17.23■□□□□ 0.35
CLSTN3-205ENST00000535452 GJA3Q9Y6H8 435 aa17.23■□□□□ 0.35
CLSTN3-205ENST00000535452 DICER1Q9UPY3 1922 aaKnown RBP17.23■□□□□ 0.35
CLSTN3-205ENST00000535452 TCERG1O14776 1098 aaKnown RBP17.22■□□□□ 0.35
CLSTN3-205ENST00000535452 NIM1KQ8IY84 436 aa17.22■□□□□ 0.35
CLSTN3-205ENST00000535452 ZNF34Q8IZ26 560 aa17.22■□□□□ 0.35
CLSTN3-205ENST00000535452 NECTIN2Q92692 538 aa17.22■□□□□ 0.35
CLSTN3-205ENST00000535452 CREBZFQ9NS37 354 aa17.22■□□□□ 0.35
CLSTN3-205ENST00000535452 RIC1Q4ADV7 1423 aa17.21■□□□□ 0.35
CLSTN3-205ENST00000535452 ABCC12Q96J65 1359 aa17.21■□□□□ 0.35
CLSTN3-205ENST00000535452 HOXA10P31260 410 aaPredicted RBP17.21■□□□□ 0.35
CLSTN3-205ENST00000535452 EPHX2P34913 555 aa17.21■□□□□ 0.35
CLSTN3-205ENST00000535452 HDGFL1Q5TGJ6 251 aa17.21■□□□□ 0.35
CLSTN3-205ENST00000535452 DDX46Q7L014 1031 aaKnown RBP17.21■□□□□ 0.35
CLSTN3-205ENST00000535452 TAF1DQ9H5J8 278 aaPredicted RBP17.21■□□□□ 0.35
CLSTN3-205ENST00000535452 TRMT112Q9UI30 125 aaKnown RBP17.21■□□□□ 0.35
CLSTN3-205ENST00000535452 CEP350Q5VT06 3117 aa17.21■□□□□ 0.34
CLSTN3-205ENST00000535452 HSP90B1P14625 803 aaKnown RBP17.2■□□□□ 0.34
CLSTN3-205ENST00000535452 COPS6Q7L5N1 327 aa17.2■□□□□ 0.34
CLSTN3-205ENST00000535452 DDX21Q9NR30 783 aaKnown RBP eCLIP17.2■□□□□ 0.34
CLSTN3-205ENST00000535452 UBN2Q6ZU65 1347 aa17.2■□□□□ 0.34
CLSTN3-205ENST00000535452 POTECB2RU33 542 aa17.19■□□□□ 0.34
CLSTN3-205ENST00000535452 PPIP5K2O43314 1243 aa17.19■□□□□ 0.34
CLSTN3-205ENST00000535452 NTSR2O95665 410 aa17.19■□□□□ 0.34
CLSTN3-205ENST00000535452 HOXB7P09629 217 aa17.19■□□□□ 0.34
CLSTN3-205ENST00000535452 XAGE3Q8WTP9 111 aa17.19■□□□□ 0.34
CLSTN3-205ENST00000535452 AIDAQ96BJ3 306 aa17.19■□□□□ 0.34
CLSTN3-205ENST00000535452 VPS33BQ9H267 617 aa17.19■□□□□ 0.34
CLSTN3-205ENST00000535452 DBF4Q9UBU7 674 aaPredicted RBP17.19■□□□□ 0.34
CLSTN3-205ENST00000535452 SH3TC1Q8TE82 1336 aa17.19■□□□□ 0.34
CLSTN3-205ENST00000535452 FZD9O00144 591 aa17.18■□□□□ 0.34
CLSTN3-205ENST00000535452 BBOX1O75936 387 aa17.18■□□□□ 0.34
CLSTN3-205ENST00000535452 OLFM4Q6UX06 510 aa17.18■□□□□ 0.34
CLSTN3-205ENST00000535452 NUP98P52948 1817 aa17.18■□□□□ 0.34
CLSTN3-205ENST00000535452 ZNF541Q9H0D2 1346 aa17.18■□□□□ 0.34
CLSTN3-205ENST00000535452 SCN4AP35499 1836 aa17.17■□□□□ 0.34
CLSTN3-205ENST00000535452 TMEM88BA6NKF7 163 aa17.17■□□□□ 0.34
CLSTN3-205ENST00000535452 ANXA1P04083 346 aa17.17■□□□□ 0.34
CLSTN3-205ENST00000535452 TCIRG1Q13488 830 aa17.17■□□□□ 0.34
CLSTN3-205ENST00000535452 DPP8Q6V1X1 898 aaPredicted RBP17.17■□□□□ 0.34
CLSTN3-205ENST00000535452 TMC4Q7Z404 712 aa17.17■□□□□ 0.34
CLSTN3-205ENST00000535452 HYPKQ9NX55 129 aa17.17■□□□□ 0.34
CLSTN3-205ENST00000535452 GOLGA2Q08379 1002 aa17.16■□□□□ 0.34
CLSTN3-205ENST00000535452 MKRN1Q9UHC7 482 aaKnown RBP17.16■□□□□ 0.34
CLSTN3-205ENST00000535452 ATP6V0A2Q9Y487 856 aa17.16■□□□□ 0.34
CLSTN3-205ENST00000535452 CHL1O00533 1208 aa17.15■□□□□ 0.34
CLSTN3-205ENST00000535452 HSPA1AP0DMV8 641 aaKnown RBP17.15■□□□□ 0.34
CLSTN3-205ENST00000535452 HSPA1BP0DMV9 641 aaKnown RBP17.15■□□□□ 0.34
CLSTN3-205ENST00000535452 SLC10A5Q5PT55 438 aa17.15■□□□□ 0.34
CLSTN3-205ENST00000535452 ANKRD13DQ6ZTN6 518 aa17.15■□□□□ 0.34
CLSTN3-205ENST00000535452 TNS4Q8IZW8 715 aa17.15■□□□□ 0.34
CLSTN3-205ENST00000535452 CFAP44Q96MT7 982 aa17.15■□□□□ 0.34
CLSTN3-205ENST00000535452 CHPF2Q9P2E5 772 aa17.15■□□□□ 0.34
CLSTN3-205ENST00000535452 ADAMTS8Q9UP79 889 aa17.15■□□□□ 0.34
CLSTN3-205ENST00000535452 GNAI1P63096 354 aa17.14■□□□□ 0.33
CLSTN3-205ENST00000535452 PROSER3Q2NL68 480 aa17.14■□□□□ 0.33
CLSTN3-205ENST00000535452 RIC3Q7Z5B4 369 aa17.14■□□□□ 0.33
CLSTN3-205ENST00000535452 NLRP10Q86W26 655 aa17.14■□□□□ 0.33
CLSTN3-205ENST00000535452 MPNDQ8N594 471 aa17.14■□□□□ 0.33
CLSTN3-205ENST00000535452 PLBD2Q8NHP8 589 aa17.14■□□□□ 0.33
CLSTN3-205ENST00000535452 BCL2L13Q9BXK5 485 aa17.14■□□□□ 0.33
CLSTN3-205ENST00000535452 ABT1Q9ULW3 272 aaKnown RBP17.14■□□□□ 0.33
CLSTN3-205ENST00000535452 POTEIP0CG38 1075 aa17.13■□□□□ 0.33
CLSTN3-205ENST00000535452 POTEJP0CG39 1038 aa17.13■□□□□ 0.33
CLSTN3-205ENST00000535452 PDIA6Q15084 440 aa17.13■□□□□ 0.33
CLSTN3-205ENST00000535452 PAXIP1Q6ZW49 1069 aaPredicted RBP17.13■□□□□ 0.33
CLSTN3-205ENST00000535452 SP8Q8IXZ3 490 aa17.13■□□□□ 0.33
CLSTN3-205ENST00000535452 CNTROBQ8N137 903 aa17.13■□□□□ 0.33
CLSTN3-205ENST00000535452 ABCC4O15439 1325 aa17.13■□□□□ 0.33
CLSTN3-205ENST00000535452 G3V3G9 751 aa17.12■□□□□ 0.33
CLSTN3-205ENST00000535452 DDX58O95786 925 aaKnown RBP17.12■□□□□ 0.33
CLSTN3-205ENST00000535452 HCLS1P14317 486 aaPredicted RBP17.12■□□□□ 0.33
CLSTN3-205ENST00000535452 GRAPQ13588 217 aa17.12■□□□□ 0.33
CLSTN3-205ENST00000535452 TNIP1Q15025 636 aa17.12■□□□□ 0.33
CLSTN3-205ENST00000535452 DCAF8Q5TAQ9 597 aa17.12■□□□□ 0.33
CLSTN3-205ENST00000535452 USP50Q70EL3 339 aaPredicted RBP17.12■□□□□ 0.33
CLSTN3-205ENST00000535452 GRAPLQ8TC17 118 aaPredicted RBP17.12■□□□□ 0.33
CLSTN3-205ENST00000535452 BEGAINQ9BUH8 593 aa17.12■□□□□ 0.33
CLSTN3-205ENST00000535452 ZNRF3Q9ULT6 936 aa17.12■□□□□ 0.33
CLSTN3-205ENST00000535452 AOC3Q16853 763 aa17.11■□□□□ 0.33
CLSTN3-205ENST00000535452 DUSP27Q5VZP5 1158 aa17.11■□□□□ 0.33
CLSTN3-205ENST00000535452 MAP1SQ66K74 1059 aaPredicted RBP17.11■□□□□ 0.33
CLSTN3-205ENST00000535452 PRKRIP1Q9H875 184 aaPredicted RBP17.11■□□□□ 0.33
CLSTN3-205ENST00000535452 EYA3Q99504 573 aa17.1■□□□□ 0.33
CLSTN3-205ENST00000535452 ADARB2Q9NS39 739 aaKnown RBP17.1■□□□□ 0.33
CLSTN3-205ENST00000535452 IFT57Q9NWB7 429 aa17.1■□□□□ 0.33
CLSTN3-205ENST00000535452 TRIM35Q9UPQ4 493 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms