RNA–Protein interactions for RNA: ENST00000531842.1

USF1-210, Transcript of upstream transcription factor 1, humanhuman

TSL 5

Gene USF1, Length 720 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-210ENST00000531842 CAPNS2Q96L46 248 aa12.08□□□□□ -0.48
USF1-210ENST00000531842 POLR2AP24928 1970 aaKnown RBP12.07□□□□□ -0.48
USF1-210ENST00000531842 SCNN1DP51172 638 aa12.07□□□□□ -0.48
USF1-210ENST00000531842 DLK2Q6UY11 383 aa12.07□□□□□ -0.48
USF1-210ENST00000531842 RSPH6AQ9H0K4 717 aa12.07□□□□□ -0.48
USF1-210ENST00000531842 LAMB2P55268 1798 aa12.06□□□□□ -0.48
USF1-210ENST00000531842 TPTE2Q6XPS3 522 aa12.06□□□□□ -0.48
USF1-210ENST00000531842 RTKN2Q8IZC4 609 aa12.06□□□□□ -0.48
USF1-210ENST00000531842 GPC2Q8N158 579 aa12.06□□□□□ -0.48
USF1-210ENST00000531842 CFAP44Q96MT7 982 aa12.06□□□□□ -0.48
USF1-210ENST00000531842 GPR101Q96P66 508 aaPredicted RBP12.06□□□□□ -0.48
USF1-210ENST00000531842 CLSPNQ9HAW4 1339 aa12.06□□□□□ -0.48
USF1-210ENST00000531842 PDE4DIPQ5VU43 2346 aa12.05□□□□□ -0.48
USF1-210ENST00000531842 GPTP24298 496 aa12.05□□□□□ -0.48
USF1-210ENST00000531842 MAP2K1Q02750 393 aaPredicted RBP12.05□□□□□ -0.48
USF1-210ENST00000531842 CLEC4GQ6UXB4 293 aa12.05□□□□□ -0.48
USF1-210ENST00000531842 TTLL7Q6ZT98 887 aa12.05□□□□□ -0.48
USF1-210ENST00000531842 PNMA8AQ86V59 439 aaPredicted RBP12.05□□□□□ -0.48
USF1-210ENST00000531842 ZIC5Q96T25 663 aa12.05□□□□□ -0.48
USF1-210ENST00000531842 ZNF652Q9Y2D9 606 aa12.05□□□□□ -0.48
USF1-210ENST00000531842 KDM3BQ7LBC6 1761 aa12.05□□□□□ -0.48
USF1-210ENST00000531842 SHTN1A0MZ66 631 aa12.04□□□□□ -0.48
USF1-210ENST00000531842 SNRPA1P09661 255 aaKnown RBP12.04□□□□□ -0.48
USF1-210ENST00000531842 GTF2E1P29083 439 aaPredicted RBP12.04□□□□□ -0.48
USF1-210ENST00000531842 LARGE2Q8N3Y3 721 aa12.04□□□□□ -0.48
USF1-210ENST00000531842 JDP2Q8WYK2 163 aa12.04□□□□□ -0.48
USF1-210ENST00000531842 ZNF428Q96B54 188 aa12.04□□□□□ -0.48
USF1-210ENST00000531842 UBN2Q6ZU65 1347 aa12.04□□□□□ -0.48
USF1-210ENST00000531842 LMOD1P29536 600 aaPredicted RBP12.03□□□□□ -0.48
USF1-210ENST00000531842 ALDH1B1P30837 517 aa12.03□□□□□ -0.48
USF1-210ENST00000531842 EIF6P56537 245 aaKnown RBP12.03□□□□□ -0.48
USF1-210ENST00000531842 MLLT1Q03111 559 aaPredicted RBP12.03□□□□□ -0.48
USF1-210ENST00000531842 AOC3Q16853 763 aa12.03□□□□□ -0.48
USF1-210ENST00000531842 CRY2Q49AN0 593 aa12.03□□□□□ -0.48
USF1-210ENST00000531842 PSMD1Q99460 953 aa12.03□□□□□ -0.48
USF1-210ENST00000531842 GLIS2Q9BZE0 524 aaPredicted RBP12.03□□□□□ -0.48
USF1-210ENST00000531842 MCOLN1Q9GZU1 580 aa12.03□□□□□ -0.48
USF1-210ENST00000531842 ZBTB3Q9H5J0 574 aa12.03□□□□□ -0.48
USF1-210ENST00000531842 MYL6BP14649 208 aa12.02□□□□□ -0.49
USF1-210ENST00000531842 SUSD4Q5VX71 490 aa12.02□□□□□ -0.49
USF1-210ENST00000531842 ZNF408Q9H9D4 720 aa12.02□□□□□ -0.49
USF1-210ENST00000531842 RRP7AQ9Y3A4 280 aaKnown RBP12.02□□□□□ -0.49
USF1-210ENST00000531842 TLL2Q9Y6L7 1015 aa12.02□□□□□ -0.49
USF1-210ENST00000531842 PPEF1O14829 653 aaPredicted RBP12.01□□□□□ -0.49
USF1-210ENST00000531842 RPGRQ92834 1020 aaKnown RBP12.01□□□□□ -0.49
USF1-210ENST00000531842 THUMPD2Q9BTF0 503 aaKnown RBP12.01□□□□□ -0.49
USF1-210ENST00000531842 PPIP5K2O43314 1243 aa12□□□□□ -0.49
USF1-210ENST00000531842 CELF2O95319 508 aaKnown RBP12□□□□□ -0.49
USF1-210ENST00000531842 U2AF1L5P0DN76 240 aaPredicted RBP12□□□□□ -0.49
USF1-210ENST00000531842 GMPSP49915 693 aaPredicted RBP12□□□□□ -0.49
USF1-210ENST00000531842 HIRAP54198 1017 aaPredicted RBP12□□□□□ -0.49
USF1-210ENST00000531842 U2AF1Q01081 240 aaKnown RBP eCLIP12□□□□□ -0.49
USF1-210ENST00000531842 CCER1Q8TC90 406 aaPredicted RBP12□□□□□ -0.49
USF1-210ENST00000531842 BEGAINQ9BUH8 593 aa12□□□□□ -0.49
USF1-210ENST00000531842 COL4A1P02462 1669 aa12□□□□□ -0.49
USF1-210ENST00000531842 RGS19P49795 217 aa11.99□□□□□ -0.49
USF1-210ENST00000531842 CXCL9Q07325 125 aa11.99□□□□□ -0.49
USF1-210ENST00000531842 CIAPIN1Q6FI81 312 aa11.99□□□□□ -0.49
USF1-210ENST00000531842 SAPCD2Q86UD0 394 aa11.99□□□□□ -0.49
USF1-210ENST00000531842 NIM1KQ8IY84 436 aa11.99□□□□□ -0.49
USF1-210ENST00000531842 TRPM4Q8TD43 1214 aa11.99□□□□□ -0.49
USF1-210ENST00000531842 RTF1Q92541 710 aaKnown RBP11.99□□□□□ -0.49
USF1-210ENST00000531842 GPRC5DQ9NZD1 345 aa11.99□□□□□ -0.49
USF1-210ENST00000531842 NPC1L1Q9UHC9 1359 aa11.99□□□□□ -0.49
USF1-210ENST00000531842 RIC1Q4ADV7 1423 aa11.99□□□□□ -0.49
USF1-210ENST00000531842 ANKRD36CQ5JPF3 1778 aa11.98□□□□□ -0.49
USF1-210ENST00000531842 MAP3K15Q6ZN16 1313 aa11.98□□□□□ -0.49
USF1-210ENST00000531842 RAD17O75943 681 aa11.98□□□□□ -0.49
USF1-210ENST00000531842 NTSR2O95665 410 aa11.98□□□□□ -0.49
USF1-210ENST00000531842 ANXA1P04083 346 aa11.98□□□□□ -0.49
USF1-210ENST00000531842 HOXA10P31260 410 aaPredicted RBP11.98□□□□□ -0.49
USF1-210ENST00000531842 ECE1P42892 770 aa11.98□□□□□ -0.49
USF1-210ENST00000531842 DGKZQ13574 1117 aa11.98□□□□□ -0.49
USF1-210ENST00000531842 USP50Q70EL3 339 aaPredicted RBP11.98□□□□□ -0.49
USF1-210ENST00000531842 ABCC4O15439 1325 aa11.96□□□□□ -0.49
USF1-210ENST00000531842 SOX10P56693 466 aa11.96□□□□□ -0.49
USF1-210ENST00000531842 TAF7Q15545 349 aaPredicted RBP11.96□□□□□ -0.49
USF1-210ENST00000531842 ZNF34Q8IZ26 560 aa11.96□□□□□ -0.49
USF1-210ENST00000531842 RBM17Q96I25 401 aaKnown RBP11.96□□□□□ -0.49
USF1-210ENST00000531842 CRAMP1Q96RY5 1269 aa11.96□□□□□ -0.49
USF1-210ENST00000531842 NYXQ9GZU5 481 aa11.96□□□□□ -0.49
USF1-210ENST00000531842 ADARB2Q9NS39 739 aaKnown RBP11.96□□□□□ -0.49
USF1-210ENST00000531842 DUOX1Q9NRD9 1551 aa11.96□□□□□ -0.5
USF1-210ENST00000531842 AKAP11Q9UKA4 1901 aa11.96□□□□□ -0.5
USF1-210ENST00000531842 YDJCA8MPS7 323 aa11.95□□□□□ -0.5
USF1-210ENST00000531842 EGFRP00533 1210 aa11.95□□□□□ -0.5
USF1-210ENST00000531842 PPP2R1AP30153 589 aa11.95□□□□□ -0.5
USF1-210ENST00000531842 EIF4A1P60842 406 aaKnown RBP11.95□□□□□ -0.5
USF1-210ENST00000531842 PROSER3Q2NL68 480 aa11.95□□□□□ -0.5
USF1-210ENST00000531842 KIF6Q6ZMV9 814 aa11.95□□□□□ -0.5
USF1-210ENST00000531842 USP48Q86UV5 1035 aa11.95□□□□□ -0.5
USF1-210ENST00000531842 ZBTB12Q9Y330 459 aaPredicted RBP11.95□□□□□ -0.5
USF1-210ENST00000531842 DDX60Q8IY21 1712 aaKnown RBP11.94□□□□□ -0.5
USF1-210ENST00000531842 SCN9AQ15858 1988 aa11.94□□□□□ -0.5
USF1-210ENST00000531842 ERVV-1B6SEH8 477 aa11.94□□□□□ -0.5
USF1-210ENST00000531842 HCLS1P14317 486 aaPredicted RBP11.94□□□□□ -0.5
USF1-210ENST00000531842 MAP2K2P36507 400 aa11.94□□□□□ -0.5
USF1-210ENST00000531842 CC2D2BQ6DHV5 1058 aa11.94□□□□□ -0.5
USF1-210ENST00000531842 NECTIN2Q92692 538 aa11.94□□□□□ -0.5
USF1-210ENST00000531842 SAMD7Q7Z3H4 446 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms