RNA–Protein interactions for RNA: ENST00000529563.5

USH1C-208, Transcript of USH1 protein network component harmonin, humanhuman

TSL 2

Gene USH1C, Length 942 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-208ENST00000529563 GJA3Q9Y6H8 435 aa15.94■□□□□ 0.14
USH1C-208ENST00000529563 KDM3BQ7LBC6 1761 aa15.93■□□□□ 0.14
USH1C-208ENST00000529563 ABCC12Q96J65 1359 aa15.93■□□□□ 0.14
USH1C-208ENST00000529563 LMOD1P29536 600 aaPredicted RBP15.93■□□□□ 0.14
USH1C-208ENST00000529563 EPHX2P34913 555 aa15.93■□□□□ 0.14
USH1C-208ENST00000529563 PNMA8AQ86V59 439 aaPredicted RBP15.93■□□□□ 0.14
USH1C-208ENST00000529563 ERBB4Q15303 1308 aa15.93■□□□□ 0.14
USH1C-208ENST00000529563 RNF123Q5XPI4 1314 aa15.93■□□□□ 0.14
USH1C-208ENST00000529563 PPEF1O14829 653 aaPredicted RBP15.92■□□□□ 0.14
USH1C-208ENST00000529563 PARP10Q53GL7 1025 aa15.92■□□□□ 0.14
USH1C-208ENST00000529563 SUSD4Q5VX71 490 aa15.92■□□□□ 0.14
USH1C-208ENST00000529563 LARGE2Q8N3Y3 721 aa15.92■□□□□ 0.14
USH1C-208ENST00000529563 PSMD1Q99460 953 aa15.92■□□□□ 0.14
USH1C-208ENST00000529563 SCN4AP35499 1836 aa15.91■□□□□ 0.14
USH1C-208ENST00000529563 RALBP1Q15311 655 aa15.91■□□□□ 0.14
USH1C-208ENST00000529563 NEUROD2Q15784 382 aa15.91■□□□□ 0.14
USH1C-208ENST00000529563 CRY2Q49AN0 593 aa15.91■□□□□ 0.14
USH1C-208ENST00000529563 GRIPAP1Q4V328 841 aa15.91■□□□□ 0.14
USH1C-208ENST00000529563 GIGYF2Q6Y7W6 1299 aaKnown RBP15.91■□□□□ 0.14
USH1C-208ENST00000529563 GPC2Q8N158 579 aa15.91■□□□□ 0.14
USH1C-208ENST00000529563 NECTIN2Q92692 538 aa15.91■□□□□ 0.14
USH1C-208ENST00000529563 AIDAQ96BJ3 306 aa15.91■□□□□ 0.14
USH1C-208ENST00000529563 NLRP3Q96P20 1036 aa15.91■□□□□ 0.14
USH1C-208ENST00000529563 NUP98P52948 1817 aa15.91■□□□□ 0.14
USH1C-208ENST00000529563 UBN2Q6ZU65 1347 aa15.91■□□□□ 0.14
USH1C-208ENST00000529563 IBTKQ9P2D0 1353 aaPredicted RBP15.9■□□□□ 0.14
USH1C-208ENST00000529563 TMEM88BA6NKF7 163 aa15.9■□□□□ 0.14
USH1C-208ENST00000529563 FZD9O00144 591 aa15.9■□□□□ 0.14
USH1C-208ENST00000529563 AIMP1Q12904 312 aaKnown RBP15.9■□□□□ 0.14
USH1C-208ENST00000529563 UTP14AQ9BVJ6 771 aaKnown RBP15.9■□□□□ 0.14
USH1C-208ENST00000529563 LAS1LQ9Y4W2 734 aaKnown RBP15.9■□□□□ 0.14
USH1C-208ENST00000529563 NIM1KQ8IY84 436 aa15.89■□□□□ 0.13
USH1C-208ENST00000529563 ZNF34Q8IZ26 560 aa15.89■□□□□ 0.13
USH1C-208ENST00000529563 CRAMP1Q96RY5 1269 aa15.89■□□□□ 0.13
USH1C-208ENST00000529563 NTSR2O95665 410 aa15.88■□□□□ 0.13
USH1C-208ENST00000529563 HOXA10P31260 410 aaPredicted RBP15.88■□□□□ 0.13
USH1C-208ENST00000529563 WDR43Q15061 677 aaKnown RBP eCLIP15.88■□□□□ 0.13
USH1C-208ENST00000529563 HSP90AB3PQ58FF7 597 aa15.88■□□□□ 0.13
USH1C-208ENST00000529563 PASKQ96RG2 1323 aa15.88■□□□□ 0.13
USH1C-208ENST00000529563 PPIP5K2O43314 1243 aa15.87■□□□□ 0.13
USH1C-208ENST00000529563 ANXA1P04083 346 aa15.87■□□□□ 0.13
USH1C-208ENST00000529563 TMPOP42166 694 aaKnown RBP15.87■□□□□ 0.13
USH1C-208ENST00000529563 MAP1SQ66K74 1059 aaPredicted RBP15.87■□□□□ 0.13
USH1C-208ENST00000529563 CCDC146Q8IYE0 955 aa15.87■□□□□ 0.13
USH1C-208ENST00000529563 CNTROBQ8N137 903 aa15.87■□□□□ 0.13
USH1C-208ENST00000529563 BABAM1Q9NWV8 329 aa15.87■□□□□ 0.13
USH1C-208ENST00000529563 ABT1Q9ULW3 272 aaKnown RBP15.87■□□□□ 0.13
USH1C-208ENST00000529563 CNTNAP1P78357 1384 aa15.87■□□□□ 0.13
USH1C-208ENST00000529563 RIC1Q4ADV7 1423 aa15.86■□□□□ 0.13
USH1C-208ENST00000529563 SUPT20HQ8NEM7 779 aa15.86■□□□□ 0.13
USH1C-208ENST00000529563 PROSER3Q2NL68 480 aa15.85■□□□□ 0.13
USH1C-208ENST00000529563 PAXIP1Q6ZW49 1069 aaPredicted RBP15.85■□□□□ 0.13
USH1C-208ENST00000529563 COPS6Q7L5N1 327 aa15.85■□□□□ 0.13
USH1C-208ENST00000529563 XAGE3Q8WTP9 111 aa15.85■□□□□ 0.13
USH1C-208ENST00000529563 TRMT112Q9UI30 125 aaKnown RBP15.85■□□□□ 0.13
USH1C-208ENST00000529563 PCNTO95613 3336 aa15.84■□□□□ 0.13
USH1C-208ENST00000529563 ITGBL1O95965 494 aaPredicted RBP15.84■□□□□ 0.13
USH1C-208ENST00000529563 VEGFBP49765 207 aa15.84■□□□□ 0.13
USH1C-208ENST00000529563 AOC3Q16853 763 aa15.84■□□□□ 0.13
USH1C-208ENST00000529563 DPP8Q6V1X1 898 aaPredicted RBP15.84■□□□□ 0.13
USH1C-208ENST00000529563 C3orf67Q6ZVT6 689 aa15.84■□□□□ 0.13
USH1C-208ENST00000529563 DDX46Q7L014 1031 aaKnown RBP15.84■□□□□ 0.13
USH1C-208ENST00000529563 MYBBP1AQ9BQG0 1328 aaKnown RBP15.84■□□□□ 0.13
USH1C-208ENST00000529563 HCLS1P14317 486 aaPredicted RBP15.83■□□□□ 0.12
USH1C-208ENST00000529563 PDIA6Q15084 440 aa15.83■□□□□ 0.12
USH1C-208ENST00000529563 DEFB115Q30KQ5 88 aa15.83■□□□□ 0.12
USH1C-208ENST00000529563 ATP6V0A2Q9Y487 856 aa15.83■□□□□ 0.12
USH1C-208ENST00000529563 EPS15P42566 896 aa15.82■□□□□ 0.12
USH1C-208ENST00000529563 GRM1Q13255 1194 aa15.82■□□□□ 0.12
USH1C-208ENST00000529563 MPNDQ8N594 471 aa15.82■□□□□ 0.12
USH1C-208ENST00000529563 RUNDC1Q96C34 613 aa15.82■□□□□ 0.12
USH1C-208ENST00000529563 ABCC4O15439 1325 aa15.82■□□□□ 0.12
USH1C-208ENST00000529563 FOXN1O15353 648 aa15.81■□□□□ 0.12
USH1C-208ENST00000529563 BBOX1O75936 387 aa15.81■□□□□ 0.12
USH1C-208ENST00000529563 CTCFP49711 727 aaPredicted RBP15.81■□□□□ 0.12
USH1C-208ENST00000529563 SLC10A5Q5PT55 438 aa15.81■□□□□ 0.12
USH1C-208ENST00000529563 HDGFL1Q5TGJ6 251 aa15.81■□□□□ 0.12
USH1C-208ENST00000529563 NLRP10Q86W26 655 aa15.81■□□□□ 0.12
USH1C-208ENST00000529563 SH3TC1Q8TE82 1336 aa15.81■□□□□ 0.12
USH1C-208ENST00000529563 ZNF428Q96B54 188 aa15.81■□□□□ 0.12
USH1C-208ENST00000529563 BCL2L13Q9BXK5 485 aa15.81■□□□□ 0.12
USH1C-208ENST00000529563 VPS33BQ9H267 617 aa15.81■□□□□ 0.12
USH1C-208ENST00000529563 DDX21Q9NR30 783 aaKnown RBP eCLIP15.81■□□□□ 0.12
USH1C-208ENST00000529563 SNED1Q8TER0 1413 aa15.8■□□□□ 0.12
USH1C-208ENST00000529563 TCIRG1Q13488 830 aa15.8■□□□□ 0.12
USH1C-208ENST00000529563 USP50Q70EL3 339 aaPredicted RBP15.8■□□□□ 0.12
USH1C-208ENST00000529563 SLC51AQ86UW1 340 aa15.8■□□□□ 0.12
USH1C-208ENST00000529563 CHPF2Q9P2E5 772 aa15.8■□□□□ 0.12
USH1C-208ENST00000529563 ZNRF3Q9ULT6 936 aa15.8■□□□□ 0.12
USH1C-208ENST00000529563 SCNN1DP51172 638 aa15.79■□□□□ 0.12
USH1C-208ENST00000529563 GRAPQ13588 217 aa15.79■□□□□ 0.12
USH1C-208ENST00000529563 LRP10Q7Z4F1 713 aa15.79■□□□□ 0.12
USH1C-208ENST00000529563 SP8Q8IXZ3 490 aa15.79■□□□□ 0.12
USH1C-208ENST00000529563 GRAPLQ8TC17 118 aaPredicted RBP15.79■□□□□ 0.12
USH1C-208ENST00000529563 BEGAINQ9BUH8 593 aa15.79■□□□□ 0.12
USH1C-208ENST00000529563 WDR33Q9C0J8 1336 aaKnown RBP15.78■□□□□ 0.12
USH1C-208ENST00000529563 RASSF10A6NK89 507 aa15.78■□□□□ 0.12
USH1C-208ENST00000529563 CHL1O00533 1208 aa15.78■□□□□ 0.12
USH1C-208ENST00000529563 MAP2K1Q02750 393 aaPredicted RBP15.78■□□□□ 0.12
USH1C-208ENST00000529563 TNIP1Q15025 636 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms