RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 SUSD4Q5VX71 490 aa31.15■■■□□ 2.58
CPSF1-202ENST00000527827 COL4A5P29400 1685 aa31.15■■■□□ 2.58
CPSF1-202ENST00000527827 ZNF34Q8IZ26 560 aa31.14■■■□□ 2.58
CPSF1-202ENST00000527827 RNF123Q5XPI4 1314 aa31.14■■■□□ 2.58
CPSF1-202ENST00000527827 CC2D2BQ6DHV5 1058 aa31.13■■■□□ 2.57
CPSF1-202ENST00000527827 RPGRQ92834 1020 aaKnown RBP31.13■■■□□ 2.57
CPSF1-202ENST00000527827 GPC2Q8N158 579 aa31.12■■■□□ 2.57
CPSF1-202ENST00000527827 TMEM88BA6NKF7 163 aa31.11■■■□□ 2.57
CPSF1-202ENST00000527827 NTSR2O95665 410 aa31.11■■■□□ 2.57
CPSF1-202ENST00000527827 ERBB4Q15303 1308 aa31.11■■■□□ 2.57
CPSF1-202ENST00000527827 GIGYF2Q6Y7W6 1299 aaKnown RBP31.11■■■□□ 2.57
CPSF1-202ENST00000527827 SLC51AQ86UW1 340 aa31.11■■■□□ 2.57
CPSF1-202ENST00000527827 JDP2Q8WYK2 163 aa31.11■■■□□ 2.57
CPSF1-202ENST00000527827 MAPK8IP3Q9UPT6 1336 aa31.11■■■□□ 2.57
CPSF1-202ENST00000527827 CLEC11AQ9Y240 323 aa31.11■■■□□ 2.57
CPSF1-202ENST00000527827 LRP10Q7Z4F1 713 aa31.1■■■□□ 2.57
CPSF1-202ENST00000527827 PNMA8AQ86V59 439 aaPredicted RBP31.1■■■□□ 2.57
CPSF1-202ENST00000527827 PNNQ9H307 717 aaKnown RBP31.1■■■□□ 2.57
CPSF1-202ENST00000527827 C3orf67Q6ZVT6 689 aa31.09■■■□□ 2.57
CPSF1-202ENST00000527827 CRAMP1Q96RY5 1269 aa31.09■■■□□ 2.57
CPSF1-202ENST00000527827 LTBP1Q14766 1721 aa31.09■■■□□ 2.57
CPSF1-202ENST00000527827 PDIA6Q15084 440 aa31.08■■■□□ 2.57
CPSF1-202ENST00000527827 MAP1SQ66K74 1059 aaPredicted RBP31.07■■■□□ 2.56
CPSF1-202ENST00000527827 RBM17Q96I25 401 aaKnown RBP31.07■■■□□ 2.56
CPSF1-202ENST00000527827 TSPYL4Q9UJ04 414 aa31.07■■■□□ 2.56
CPSF1-202ENST00000527827 FOXN1O15353 648 aa31.06■■■□□ 2.56
CPSF1-202ENST00000527827 VEGFBP49765 207 aa31.06■■■□□ 2.56
CPSF1-202ENST00000527827 EIF6P56537 245 aaKnown RBP31.06■■■□□ 2.56
CPSF1-202ENST00000527827 GRIPAP1Q4V328 841 aa31.06■■■□□ 2.56
CPSF1-202ENST00000527827 CNTROBQ8N137 903 aa31.06■■■□□ 2.56
CPSF1-202ENST00000527827 PPEF1O14829 653 aaPredicted RBP31.05■■■□□ 2.56
CPSF1-202ENST00000527827 GJA3Q9Y6H8 435 aa31.05■■■□□ 2.56
CPSF1-202ENST00000527827 PARP10Q53GL7 1025 aa31.04■■■□□ 2.56
CPSF1-202ENST00000527827 PPP1R42Q7Z4L9 355 aa31.04■■■□□ 2.56
CPSF1-202ENST00000527827 TCERG1O14776 1098 aaKnown RBP31.03■■■□□ 2.56
CPSF1-202ENST00000527827 EIF2S2P20042 333 aaKnown RBP31.03■■■□□ 2.56
CPSF1-202ENST00000527827 PROSER3Q2NL68 480 aa31.03■■■□□ 2.56
CPSF1-202ENST00000527827 LARGE2Q8N3Y3 721 aa31.03■■■□□ 2.56
CPSF1-202ENST00000527827 RIPK4P57078 832 aa31.02■■■□□ 2.56
CPSF1-202ENST00000527827 ANXA1P04083 346 aa31.01■■■□□ 2.55
CPSF1-202ENST00000527827 SLC10A5Q5PT55 438 aa31.01■■■□□ 2.55
CPSF1-202ENST00000527827 NLRP3Q96P20 1036 aa31.01■■■□□ 2.55
CPSF1-202ENST00000527827 ANKRD36CQ5JPF3 1778 aa31■■■□□ 2.55
CPSF1-202ENST00000527827 SCNN1DP51172 638 aa31■■■□□ 2.55
CPSF1-202ENST00000527827 BABAM1Q9NWV8 329 aa31■■■□□ 2.55
CPSF1-202ENST00000527827 RASSF10A6NK89 507 aa30.99■■■□□ 2.55
CPSF1-202ENST00000527827 EPS15P42566 896 aa30.99■■■□□ 2.55
CPSF1-202ENST00000527827 UTP14AQ9BVJ6 771 aaKnown RBP30.99■■■□□ 2.55
CPSF1-202ENST00000527827 LAMB2P55268 1798 aa30.99■■■□□ 2.55
CPSF1-202ENST00000527827 LMOD1P29536 600 aaPredicted RBP30.98■■■□□ 2.55
CPSF1-202ENST00000527827 TMPOP42166 694 aaKnown RBP30.97■■■□□ 2.55
CPSF1-202ENST00000527827 DEFB115Q30KQ5 88 aa30.97■■■□□ 2.55
CPSF1-202ENST00000527827 ATP6V0A2Q9Y487 856 aa30.97■■■□□ 2.55
CPSF1-202ENST00000527827 NIM1KQ8IY84 436 aa30.96■■■□□ 2.55
CPSF1-202ENST00000527827 PRDM10Q9NQV6 1147 aa30.96■■■□□ 2.55
CPSF1-202ENST00000527827 WBP1LQ9NX94 342 aa30.96■■■□□ 2.55
CPSF1-202ENST00000527827 ABCC4O15439 1325 aa30.96■■■□□ 2.55
CPSF1-202ENST00000527827 PPIP5K2O43314 1243 aa30.95■■■□□ 2.55
CPSF1-202ENST00000527827 AOC3Q16853 763 aa30.95■■■□□ 2.55
CPSF1-202ENST00000527827 DDX21Q9NR30 783 aaKnown RBP eCLIP30.95■■■□□ 2.55
CPSF1-202ENST00000527827 CTCFP49711 727 aaPredicted RBP30.94■■■□□ 2.54
CPSF1-202ENST00000527827 COPS6Q7L5N1 327 aa30.94■■■□□ 2.54
CPSF1-202ENST00000527827 AIDAQ96BJ3 306 aa30.94■■■□□ 2.54
CPSF1-202ENST00000527827 FMR1Q06787 632 aaKnown RBP eCLIP30.93■■■□□ 2.544e-10■□□□□ 9.7
CPSF1-202ENST00000527827 RALBP1Q15311 655 aa30.93■■■□□ 2.54
CPSF1-202ENST00000527827 NECTIN2Q92692 538 aa30.93■■■□□ 2.54
CPSF1-202ENST00000527827 VPS33BQ9H267 617 aa30.93■■■□□ 2.54
CPSF1-202ENST00000527827 LMOD3Q0VAK6 560 aa30.92■■■□□ 2.54
CPSF1-202ENST00000527827 USP50Q70EL3 339 aaPredicted RBP30.92■■■□□ 2.54
CPSF1-202ENST00000527827 NLRP10Q86W26 655 aa30.92■■■□□ 2.54
CPSF1-202ENST00000527827 XAGE3Q8WTP9 111 aa30.92■■■□□ 2.54
CPSF1-202ENST00000527827 RTFDC1Q9BY42 306 aaPredicted RBP30.92■■■□□ 2.54
CPSF1-202ENST00000527827 AIMP1Q12904 312 aaKnown RBP30.91■■■□□ 2.54
CPSF1-202ENST00000527827 TMX4Q9H1E5 349 aaPredicted RBP30.91■■■□□ 2.54
CPSF1-202ENST00000527827 ABT1Q9ULW3 272 aaKnown RBP30.91■■■□□ 2.54
CPSF1-202ENST00000527827 WDR33Q9C0J8 1336 aaKnown RBP30.91■■■□□ 2.54
CPSF1-202ENST00000527827 TRPM7Q96QT4 1865 aa30.91■■■□□ 2.54
CPSF1-202ENST00000527827 HCLS1P14317 486 aaPredicted RBP30.9■■■□□ 2.54
CPSF1-202ENST00000527827 HSP90AB3PQ58FF7 597 aa30.9■■■□□ 2.54
CPSF1-202ENST00000527827 TAF1P21675 1872 aa30.89■■■□□ 2.54
CPSF1-202ENST00000527827 KRT24Q2M2I5 525 aa30.89■■■□□ 2.54
CPSF1-202ENST00000527827 SP8Q8IXZ3 490 aa30.89■■■□□ 2.54
CPSF1-202ENST00000527827 BBOX1O75936 387 aa30.88■■■□□ 2.53
CPSF1-202ENST00000527827 CXCL9Q07325 125 aa30.88■■■□□ 2.53
CPSF1-202ENST00000527827 TCIRG1Q13488 830 aa30.88■■■□□ 2.53
CPSF1-202ENST00000527827 SUPT20HQ8NEM7 779 aa30.88■■■□□ 2.53
CPSF1-202ENST00000527827 GPRC5DQ9NZD1 345 aa30.88■■■□□ 2.53
CPSF1-202ENST00000527827 ZNRF3Q9ULT6 936 aa30.88■■■□□ 2.53
CPSF1-202ENST00000527827 CHL1O00533 1208 aa30.87■■■□□ 2.53
CPSF1-202ENST00000527827 LBX1P52954 281 aa30.86■■■□□ 2.53
CPSF1-202ENST00000527827 NEUROD2Q15784 382 aa30.86■■■□□ 2.53
CPSF1-202ENST00000527827 DPP8Q6V1X1 898 aaPredicted RBP30.86■■■□□ 2.53
CPSF1-202ENST00000527827 CCDC146Q8IYE0 955 aa30.86■■■□□ 2.53
CPSF1-202ENST00000527827 TRMT112Q9UI30 125 aaKnown RBP30.86■■■□□ 2.53
CPSF1-202ENST00000527827 THSD7BQ9C0I4 1608 aa30.85■■■□□ 2.53
CPSF1-202ENST00000527827 TRAF5O00463 557 aa30.85■■■□□ 2.53
CPSF1-202ENST00000527827 CST9Q5W186 159 aa30.85■■■□□ 2.53
CPSF1-202ENST00000527827 MPNDQ8N594 471 aa30.85■■■□□ 2.53
CPSF1-202ENST00000527827 ADARB2Q9NS39 739 aaKnown RBP30.85■■■□□ 2.53
CPSF1-202ENST00000527827 SH3TC1Q8TE82 1336 aa30.84■■■□□ 2.53
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms