RNA–Protein interactions for RNA: ENST00000522122.1

SYNPO-205, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SYNPO, Length 5,098 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-205ENST00000522122 CEP131Q9UPN4 1083 aa16.1■□□□□ 0.17
SYNPO-205ENST00000522122 IQSEC2Q5JU85 1478 aa16.1■□□□□ 0.17
SYNPO-205ENST00000522122 F13A1P00488 732 aa16.09■□□□□ 0.17
SYNPO-205ENST00000522122 MYO6Q9UM54 1294 aa16.09■□□□□ 0.17
SYNPO-205ENST00000522122 AOX1Q06278 1338 aa16.09■□□□□ 0.17
SYNPO-205ENST00000522122 KIAA0232Q92628 1395 aa16.09■□□□□ 0.17
SYNPO-205ENST00000522122 EIF3JO75822 258 aaKnown RBP16.09■□□□□ 0.17
SYNPO-205ENST00000522122 MAP3K2Q9Y2U5 619 aa16.09■□□□□ 0.17
SYNPO-205ENST00000522122 HCLS1P14317 486 aaPredicted RBP16.09■□□□□ 0.17
SYNPO-205ENST00000522122 ODF2Q5BJF6 829 aa16.09■□□□□ 0.17
SYNPO-205ENST00000522122 ZMYND15Q9H091 742 aa16.09■□□□□ 0.17
SYNPO-205ENST00000522122 NOLC1Q14978 699 aaKnown RBP eCLIP16.09■□□□□ 0.17
SYNPO-205ENST00000522122 KRT24Q2M2I5 525 aa16.09■□□□□ 0.17
SYNPO-205ENST00000522122 HSP90AB2PQ58FF8 381 aa16.09■□□□□ 0.17
SYNPO-205ENST00000522122 SOS1Q07889 1333 aaPredicted RBP16.09■□□□□ 0.17
SYNPO-205ENST00000522122 IBTKQ9P2D0 1353 aaPredicted RBP16.09■□□□□ 0.17
SYNPO-205ENST00000522122 EPB41L2O43491 1005 aaKnown RBP16.08■□□□□ 0.17
SYNPO-205ENST00000522122 FOXO3O43524 673 aa16.08■□□□□ 0.17
SYNPO-205ENST00000522122 ARHGAP29Q52LW3 1261 aa16.08■□□□□ 0.17
SYNPO-205ENST00000522122 PTCH1Q13635 1447 aa16.08■□□□□ 0.17
SYNPO-205ENST00000522122 ABCF2Q9UG63 623 aa16.08■□□□□ 0.16
SYNPO-205ENST00000522122 ADGRB3O60242 1522 aa16.08■□□□□ 0.16
SYNPO-205ENST00000522122 IGHMBP2P38935 993 aaKnown RBP16.08■□□□□ 0.16
SYNPO-205ENST00000522122 GLI2P10070 1586 aa16.08■□□□□ 0.16
SYNPO-205ENST00000522122 ZNF165P49910 485 aa16.07■□□□□ 0.16
SYNPO-205ENST00000522122 ATP7BP35670 1465 aa16.07■□□□□ 0.16
SYNPO-205ENST00000522122 CCDC196A0A1B0GTZ2 297 aa16.07■□□□□ 0.16
SYNPO-205ENST00000522122 CHL1O00533 1208 aa16.07■□□□□ 0.16
SYNPO-205ENST00000522122 CCDC181Q5TID7 509 aa16.07■□□□□ 0.16
SYNPO-205ENST00000522122 CCT2P78371 535 aaKnown RBP16.07■□□□□ 0.16
SYNPO-205ENST00000522122 GAS2L3Q86XJ1 694 aa16.07■□□□□ 0.16
SYNPO-205ENST00000522122 FSIP1Q8NA03 581 aa16.07■□□□□ 0.16
SYNPO-205ENST00000522122 NAPBQ9H115 298 aa16.07■□□□□ 0.16
SYNPO-205ENST00000522122 FAM135BQ49AJ0 1406 aa16.07■□□□□ 0.16
SYNPO-205ENST00000522122 ZNF213O14771 459 aa16.07■□□□□ 0.16
SYNPO-205ENST00000522122 NEMFO60524 1076 aa16.07■□□□□ 0.16
SYNPO-205ENST00000522122 TNNT1P13805 278 aa16.07■□□□□ 0.16
SYNPO-205ENST00000522122 MTHFSDQ2M296 383 aaKnown RBP16.07■□□□□ 0.16
SYNPO-205ENST00000522122 TXLNBQ8N3L3 684 aa16.07■□□□□ 0.16
SYNPO-205ENST00000522122 ZSCAN12O43309 604 aa16.06■□□□□ 0.16
SYNPO-205ENST00000522122 IFIT5Q13325 482 aaKnown RBP16.06■□□□□ 0.16
SYNPO-205ENST00000522122 FLT4P35916 1363 aa16.06■□□□□ 0.16
SYNPO-205ENST00000522122 ATP2B2Q01814 1243 aa16.06■□□□□ 0.16
SYNPO-205ENST00000522122 ZFYVE27Q5T4F4 411 aa16.06■□□□□ 0.16
SYNPO-205ENST00000522122 TANGO6Q9C0B7 1094 aa16.06■□□□□ 0.16
SYNPO-205ENST00000522122 HMG20BQ9P0W2 317 aa16.06■□□□□ 0.16
SYNPO-205ENST00000522122 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.06■□□□□ 0.16
SYNPO-205ENST00000522122 MEX3CQ5U5Q3 659 aaKnown RBP16.06■□□□□ 0.16
SYNPO-205ENST00000522122 NEK1Q96PY6 1258 aa16.06■□□□□ 0.16
SYNPO-205ENST00000522122 CAVIN2O95810 425 aa16.05■□□□□ 0.16
SYNPO-205ENST00000522122 TTC41PQ6P2S7 1318 aa16.05■□□□□ 0.16
SYNPO-205ENST00000522122 SSH2Q76I76 1423 aa16.05■□□□□ 0.16
SYNPO-205ENST00000522122 GIMAP6Q6P9H5 292 aa16.05■□□□□ 0.16
SYNPO-205ENST00000522122 TMCO3Q6UWJ1 677 aa16.05■□□□□ 0.16
SYNPO-205ENST00000522122 ZHX3Q9H4I2 956 aa16.05■□□□□ 0.16
SYNPO-205ENST00000522122 PRM3Q9NNZ6 103 aa16.05■□□□□ 0.16
SYNPO-205ENST00000522122 ANXA1P04083 346 aa16.05■□□□□ 0.16
SYNPO-205ENST00000522122 C16orf45Q96MC5 204 aaPredicted RBP16.05■□□□□ 0.16
SYNPO-205ENST00000522122 TOP1P11387 765 aaKnown RBP16.05■□□□□ 0.16
SYNPO-205ENST00000522122 BMP2KQ9NSY1 1161 aaPredicted RBP16.05■□□□□ 0.16
SYNPO-205ENST00000522122 CGNQ9P2M7 1197 aaKnown RBP16.05■□□□□ 0.16
SYNPO-205ENST00000522122 EIF5P55010 431 aaKnown RBP16.04■□□□□ 0.16
SYNPO-205ENST00000522122 HECW2Q9P2P5 1572 aa16.04■□□□□ 0.16
SYNPO-205ENST00000522122 GOLGA8BA8MQT2 603 aa16.04■□□□□ 0.16
SYNPO-205ENST00000522122 RTL1A6NKG5 1358 aa16.04■□□□□ 0.16
SYNPO-205ENST00000522122 SKIDA1Q1XH10 827 aa16.04■□□□□ 0.16
SYNPO-205ENST00000522122 ZNF830Q96NB3 372 aaPredicted RBP16.04■□□□□ 0.16
SYNPO-205ENST00000522122 GOLIM4O00461 696 aa16.03■□□□□ 0.16
SYNPO-205ENST00000522122 URI1O94763 535 aaPredicted RBP16.03■□□□□ 0.16
SYNPO-205ENST00000522122 AK2P54819 239 aa16.03■□□□□ 0.16
SYNPO-205ENST00000522122 PIBF1Q8WXW3 757 aa16.03■□□□□ 0.16
SYNPO-205ENST00000522122 AATKQ6ZMQ8 1374 aa16.03■□□□□ 0.16
SYNPO-205ENST00000522122 NEO1Q92859 1461 aa16.03■□□□□ 0.16
SYNPO-205ENST00000522122 MINDY4BA8MYZ0 360 aa16.03■□□□□ 0.16
SYNPO-205ENST00000522122 CD2BP2O95400 341 aaKnown RBP16.03■□□□□ 0.16
SYNPO-205ENST00000522122 CBX1P83916 185 aa16.03■□□□□ 0.16
SYNPO-205ENST00000522122 MAP3K12Q12852 859 aa16.03■□□□□ 0.16
SYNPO-205ENST00000522122 MLH3Q9UHC1 1453 aa16.03■□□□□ 0.16
SYNPO-205ENST00000522122 UBE3BQ7Z3V4 1068 aa16.03■□□□□ 0.16
SYNPO-205ENST00000522122 FAM200AQ8TCP9 573 aa16.03■□□□□ 0.16
SYNPO-205ENST00000522122 TSPYL1Q9H0U9 437 aa16.03■□□□□ 0.16
SYNPO-205ENST00000522122 ZNF500O60304 480 aaPredicted RBP16.03■□□□□ 0.16
SYNPO-205ENST00000522122 GSDMDP57764 484 aa16.03■□□□□ 0.16
SYNPO-205ENST00000522122 STX1AQ16623 288 aa16.03■□□□□ 0.16
SYNPO-205ENST00000522122 KLHL10Q6JEL2 608 aa16.03■□□□□ 0.16
SYNPO-205ENST00000522122 TRMT1Q9NXH9 659 aaKnown RBP16.03■□□□□ 0.16
SYNPO-205ENST00000522122 ABCC3O15438 1527 aa16.02■□□□□ 0.16
SYNPO-205ENST00000522122 PPP4R3BQ5MIZ7 849 aa16.02■□□□□ 0.16
SYNPO-205ENST00000522122 PRDM10Q9NQV6 1147 aa16.02■□□□□ 0.16
SYNPO-205ENST00000522122 TMOD3Q9NYL9 352 aa16.02■□□□□ 0.16
SYNPO-205ENST00000522122 TNRQ92752 1358 aa16.02■□□□□ 0.16
SYNPO-205ENST00000522122 BRD1O95696 1058 aa16.02■□□□□ 0.16
SYNPO-205ENST00000522122 SSBP05455 408 aaKnown RBP eCLIP16.02■□□□□ 0.16
SYNPO-205ENST00000522122 SYCP1Q15431 976 aa16.02■□□□□ 0.16
SYNPO-205ENST00000522122 CCDC82Q8N4S0 544 aa16.02■□□□□ 0.16
SYNPO-205ENST00000522122 MAP3K5Q99683 1374 aa16.02■□□□□ 0.16
SYNPO-205ENST00000522122 ERCC6L2Q5T890 1561 aa16.02■□□□□ 0.16
SYNPO-205ENST00000522122 IQCEQ6IPM2 695 aa16.02■□□□□ 0.15
SYNPO-205ENST00000522122 NECAB1Q8N987 351 aa16.02■□□□□ 0.15
SYNPO-205ENST00000522122 USP16Q9Y5T5 823 aa16.02■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms