RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 PRICKLE2Q7Z3G6 844 aa11.68□□□□□ -0.54
LSM1-202ENST00000520286 RNF217Q8TC41 542 aa11.68□□□□□ -0.54
LSM1-202ENST00000520286 DNAJC25Q9H1X3 360 aa11.68□□□□□ -0.54
LSM1-202ENST00000520286 NEUROD4Q9HD90 331 aa11.68□□□□□ -0.54
LSM1-202ENST00000520286 ATP4AP20648 1035 aa11.67□□□□□ -0.54
LSM1-202ENST00000520286 C9orf131Q5VYM1 1079 aa11.67□□□□□ -0.54
LSM1-202ENST00000520286 ARSDP51689 593 aa11.66□□□□□ -0.54
LSM1-202ENST00000520286 WDR44Q5JSH3 913 aa11.66□□□□□ -0.54
LSM1-202ENST00000520286 C6orf118Q5T5N4 469 aa11.66□□□□□ -0.54
LSM1-202ENST00000520286 LYSMD3Q7Z3D4 306 aa11.66□□□□□ -0.54
LSM1-202ENST00000520286 CPNE3O75131 537 aaKnown RBP11.65□□□□□ -0.54
LSM1-202ENST00000520286 INPP5BP32019 993 aa11.65□□□□□ -0.54
LSM1-202ENST00000520286 ARSJQ5FYB0 599 aaPredicted RBP11.65□□□□□ -0.54
LSM1-202ENST00000520286 FNDC3AQ9Y2H6 1198 aaKnown RBP11.65□□□□□ -0.54
LSM1-202ENST00000520286 USP20Q9Y2K6 914 aa11.65□□□□□ -0.54
LSM1-202ENST00000520286 NAALADL2Q58DX5 795 aa11.64□□□□□ -0.55
LSM1-202ENST00000520286 BTLAQ7Z6A9 289 aa11.64□□□□□ -0.55
LSM1-202ENST00000520286 FRMD6Q96NE9 622 aa11.64□□□□□ -0.55
LSM1-202ENST00000520286 ZIC5Q96T25 663 aa11.64□□□□□ -0.55
LSM1-202ENST00000520286 LRRC69Q6ZNQ3 347 aa11.63□□□□□ -0.55
LSM1-202ENST00000520286 CMTR1Q8N1G2 835 aaKnown RBP11.63□□□□□ -0.55
LSM1-202ENST00000520286 TIMMDC1Q9NPL8 285 aa11.63□□□□□ -0.55
LSM1-202ENST00000520286 METTL5Q9NRN9 209 aaKnown RBP11.63□□□□□ -0.55
LSM1-202ENST00000520286 SPG7Q9UQ90 795 aa11.63□□□□□ -0.55
LSM1-202ENST00000520286 RTCBQ9Y3I0 505 aaKnown RBP11.63□□□□□ -0.55
LSM1-202ENST00000520286 AK5Q9Y6K8 562 aa11.63□□□□□ -0.55
LSM1-202ENST00000520286 A0A1B0GTH6 734 aa11.62□□□□□ -0.55
LSM1-202ENST00000520286 TNFRSF21O75509 655 aa11.62□□□□□ -0.55
LSM1-202ENST00000520286 MSX1P28360 303 aa11.62□□□□□ -0.55
LSM1-202ENST00000520286 FANCCQ00597 558 aa11.62□□□□□ -0.55
LSM1-202ENST00000520286 MRPL14Q6P1L8 145 aaKnown RBP11.62□□□□□ -0.55
LSM1-202ENST00000520286 XKR5Q6UX68 686 aa11.62□□□□□ -0.55
LSM1-202ENST00000520286 ZNF438Q7Z4V0 828 aa11.62□□□□□ -0.55
LSM1-202ENST00000520286 SREK1Q8WXA9 508 aaKnown RBP11.62□□□□□ -0.55
LSM1-202ENST00000520286 RNF34Q969K3 372 aa11.62□□□□□ -0.55
LSM1-202ENST00000520286 FOXD3Q9UJU5 478 aaPredicted RBP11.62□□□□□ -0.55
LSM1-202ENST00000520286 UBAP1LF5GYI3 381 aa11.61□□□□□ -0.55
LSM1-202ENST00000520286 RHOQP17081 205 aa11.61□□□□□ -0.55
LSM1-202ENST00000520286 TRIP4Q15650 581 aaPredicted RBP11.61□□□□□ -0.55
LSM1-202ENST00000520286 METTL16Q86W50 562 aaKnown RBP11.61□□□□□ -0.55
LSM1-202ENST00000520286 NT5DC4Q86YG4 428 aa11.61□□□□□ -0.55
LSM1-202ENST00000520286 DRC1Q96MC2 740 aa11.61□□□□□ -0.55
LSM1-202ENST00000520286 RAD51AP2Q09MP3 1159 aa11.6□□□□□ -0.55
LSM1-202ENST00000520286 PDE12Q6L8Q7 609 aaKnown RBP11.6□□□□□ -0.55
LSM1-202ENST00000520286 SNX29Q8TEQ0 813 aa11.6□□□□□ -0.55
LSM1-202ENST00000520286 KCNMB2Q9Y691 235 aa11.6□□□□□ -0.55
LSM1-202ENST00000520286 A0A1W2PNR3 127 aa11.59□□□□□ -0.55
LSM1-202ENST00000520286 TTLL8A6PVC2 850 aa11.59□□□□□ -0.55
LSM1-202ENST00000520286 ZNF76P36508 570 aa11.59□□□□□ -0.55
LSM1-202ENST00000520286 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.59□□□□□ -0.55
LSM1-202ENST00000520286 USPL1Q5W0Q7 1092 aa11.59□□□□□ -0.55
LSM1-202ENST00000520286 CRELD1Q96HD1 420 aa11.59□□□□□ -0.55
LSM1-202ENST00000520286 EPB42P16452 691 aa11.58□□□□□ -0.56
LSM1-202ENST00000520286 EIF4BP23588 611 aaKnown RBP11.58□□□□□ -0.56
LSM1-202ENST00000520286 CCDC74AQ96AQ1 378 aa11.58□□□□□ -0.56
LSM1-202ENST00000520286 ELP3Q9H9T3 547 aa11.58□□□□□ -0.56
LSM1-202ENST00000520286 ZFYVE28Q9HCC9 887 aa11.58□□□□□ -0.56
LSM1-202ENST00000520286 GJA3Q9Y6H8 435 aa11.58□□□□□ -0.56
LSM1-202ENST00000520286 PHACTR2O75167 634 aa11.57□□□□□ -0.56
LSM1-202ENST00000520286 CTSHP09668 335 aa11.57□□□□□ -0.56
LSM1-202ENST00000520286 SCARF1Q14162 830 aa11.57□□□□□ -0.56
LSM1-202ENST00000520286 CEP63Q96MT8 703 aa11.57□□□□□ -0.56
LSM1-202ENST00000520286 TMEM63CQ9P1W3 806 aa11.57□□□□□ -0.56
LSM1-202ENST00000520286 FIGNL2A6NMB9 653 aa11.56□□□□□ -0.56
LSM1-202ENST00000520286 TYRO3Q06418 890 aa11.56□□□□□ -0.56
LSM1-202ENST00000520286 PI16Q6UXB8 463 aa11.56□□□□□ -0.56
LSM1-202ENST00000520286 NLRP2Q9NX02 1062 aa11.56□□□□□ -0.56
LSM1-202ENST00000520286 GRNP28799 593 aaKnown RBP11.55□□□□□ -0.56
LSM1-202ENST00000520286 IRS1P35568 1242 aa11.55□□□□□ -0.56
LSM1-202ENST00000520286 EPS8L3Q8TE67 593 aaKnown RBP11.55□□□□□ -0.56
LSM1-202ENST00000520286 SOS2Q07890 1332 aaPredicted RBP11.55□□□□□ -0.56
LSM1-202ENST00000520286 GIPC1O14908 333 aa11.54□□□□□ -0.56
LSM1-202ENST00000520286 XYLBO75191 536 aa11.54□□□□□ -0.56
LSM1-202ENST00000520286 SF3A1Q15459 793 aaKnown RBP11.54□□□□□ -0.56
LSM1-202ENST00000520286 TGIF2Q9GZN2 237 aa11.54□□□□□ -0.56
LSM1-202ENST00000520286 CRISPLD1Q9H336 500 aa11.54□□□□□ -0.56
LSM1-202ENST00000520286 C12orf49Q9H741 205 aa11.54□□□□□ -0.56
LSM1-202ENST00000520286 GPAMQ9HCL2 828 aa11.54□□□□□ -0.56
LSM1-202ENST00000520286 BMP1P13497 986 aa11.53□□□□□ -0.56
LSM1-202ENST00000520286 OSBPL7Q9BZF2 842 aa11.53□□□□□ -0.56
LSM1-202ENST00000520286 RUBCNLQ9H714 662 aa11.53□□□□□ -0.56
LSM1-202ENST00000520286 PDZRN3Q9UPQ7 1066 aa11.53□□□□□ -0.56
LSM1-202ENST00000520286 FAM187AA6NFU0 413 aa11.52□□□□□ -0.57
LSM1-202ENST00000520286 PGBD3Q8N328 593 aa11.52□□□□□ -0.57
LSM1-202ENST00000520286 CCSER2Q9H7U1 834 aa11.52□□□□□ -0.57
LSM1-202ENST00000520286 AVPP01185 164 aa11.51□□□□□ -0.57
LSM1-202ENST00000520286 NPHS2Q9NP85 383 aa11.51□□□□□ -0.57
LSM1-202ENST00000520286 BRD7Q9NPI1 651 aa11.51□□□□□ -0.57
LSM1-202ENST00000520286 PPP1R1BQ9UD71 204 aaPredicted RBP11.51□□□□□ -0.57
LSM1-202ENST00000520286 DYRK1BQ9Y463 629 aa11.51□□□□□ -0.57
LSM1-202ENST00000520286 EGFRP00533 1210 aa11.5□□□□□ -0.57
LSM1-202ENST00000520286 F11P03951 625 aa11.5□□□□□ -0.57
LSM1-202ENST00000520286 POLR3DP05423 398 aaPredicted RBP11.5□□□□□ -0.57
LSM1-202ENST00000520286 TRIM46Q7Z4K8 759 aa11.5□□□□□ -0.57
LSM1-202ENST00000520286 NLRP8Q86W28 1048 aa11.5□□□□□ -0.57
LSM1-202ENST00000520286 C1orf127Q8N9H9 656 aa11.5□□□□□ -0.57
LSM1-202ENST00000520286 CHRDQ9H2X0 955 aa11.5□□□□□ -0.57
LSM1-202ENST00000520286 ABI2Q9NYB9 513 aaPredicted RBP11.5□□□□□ -0.57
LSM1-202ENST00000520286 NLRP13Q86W25 1043 aa11.49□□□□□ -0.57
LSM1-202ENST00000520286 GAS2L1Q99501 681 aaPredicted RBP11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms