RNA–Protein interactions for RNA: ENST00000517391.5

CPNE3-202, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 785 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-202ENST00000517391 IGF1RP08069 1367 aa8.78□□□□□ -1
CPNE3-202ENST00000517391 GPC1P35052 558 aa8.78□□□□□ -1
CPNE3-202ENST00000517391 EIF1AXP47813 144 aaKnown RBP8.78□□□□□ -1
CPNE3-202ENST00000517391 SLC27A3Q5K4L6 730 aa8.78□□□□□ -1
CPNE3-202ENST00000517391 ALDH16A1Q8IZ83 802 aa8.78□□□□□ -1
CPNE3-202ENST00000517391 L3MBTL2Q969R5 705 aa8.78□□□□□ -1
CPNE3-202ENST00000517391 MRRFQ96E11 262 aaKnown RBP8.78□□□□□ -1
CPNE3-202ENST00000517391 QTRT2Q9H974 415 aaKnown RBP8.78□□□□□ -1
CPNE3-202ENST00000517391 USP3Q9Y6I4 520 aa8.78□□□□□ -1
CPNE3-202ENST00000517391 MYO15BQ96JP2 1530 aa8.77□□□□□ -1.01
CPNE3-202ENST00000517391 TNFRSF10BO14763 440 aa8.77□□□□□ -1.01
CPNE3-202ENST00000517391 RHOQP17081 205 aa8.77□□□□□ -1.01
CPNE3-202ENST00000517391 RTN1Q16799 776 aa8.77□□□□□ -1.01
CPNE3-202ENST00000517391 C11orf91Q3C1V1 193 aa8.77□□□□□ -1.01
CPNE3-202ENST00000517391 TMEM214Q6NUQ4 689 aaKnown RBP8.77□□□□□ -1.01
CPNE3-202ENST00000517391 HCN4Q9Y3Q4 1203 aa8.77□□□□□ -1.01
CPNE3-202ENST00000517391 FGD1P98174 961 aa8.76□□□□□ -1.01
CPNE3-202ENST00000517391 PDE3BQ13370 1112 aa8.76□□□□□ -1.01
CPNE3-202ENST00000517391 EAPPQ56P03 285 aaPredicted RBP8.76□□□□□ -1.01
CPNE3-202ENST00000517391 C1orf53Q5VUE5 145 aa8.76□□□□□ -1.01
CPNE3-202ENST00000517391 FOXR1Q6PIV2 292 aa8.76□□□□□ -1.01
CPNE3-202ENST00000517391 FBXO33Q7Z6M2 555 aa8.76□□□□□ -1.01
CPNE3-202ENST00000517391 ZNF295-AS1Q8N0V1 137 aa8.76□□□□□ -1.01
CPNE3-202ENST00000517391 RHBDD1Q8TEB9 315 aa8.76□□□□□ -1.01
CPNE3-202ENST00000517391 ZDHHC1Q8WTX9 485 aa8.76□□□□□ -1.01
CPNE3-202ENST00000517391 GMCL1Q96IK5 515 aa8.76□□□□□ -1.01
CPNE3-202ENST00000517391 NGLY1Q96IV0 654 aa8.76□□□□□ -1.01
CPNE3-202ENST00000517391 LRFN2Q9ULH4 789 aa8.76□□□□□ -1.01
CPNE3-202ENST00000517391 POU4F2Q12837 409 aa8.75□□□□□ -1.01
CPNE3-202ENST00000517391 TMC1Q8TDI8 760 aa8.75□□□□□ -1.01
CPNE3-202ENST00000517391 DMRTB1Q96MA1 342 aa8.75□□□□□ -1.01
CPNE3-202ENST00000517391 GRIP2Q9C0E4 1043 aa8.75□□□□□ -1.01
CPNE3-202ENST00000517391 FZD6O60353 706 aa8.74□□□□□ -1.01
CPNE3-202ENST00000517391 VAMP1P23763 118 aa8.74□□□□□ -1.01
CPNE3-202ENST00000517391 GNASQ5JWF2 1037 aa8.74□□□□□ -1.01
CPNE3-202ENST00000517391 TMC7Q7Z402 723 aa8.74□□□□□ -1.01
CPNE3-202ENST00000517391 ACDQ96AP0 544 aa8.74□□□□□ -1.01
CPNE3-202ENST00000517391 PHACTR1Q9C0D0 580 aa8.74□□□□□ -1.01
CPNE3-202ENST00000517391 CUEDC1Q9NWM3 386 aaPredicted RBP8.74□□□□□ -1.01
CPNE3-202ENST00000517391 KIAA1522Q9P206 1035 aaPredicted RBP8.74□□□□□ -1.01
CPNE3-202ENST00000517391 TREHO43280 583 aa8.73□□□□□ -1.01
CPNE3-202ENST00000517391 USP5P45974 858 aa8.73□□□□□ -1.01
CPNE3-202ENST00000517391 PLCB3Q01970 1234 aa8.73□□□□□ -1.01
CPNE3-202ENST00000517391 HIF1AQ16665 826 aa8.73□□□□□ -1.01
CPNE3-202ENST00000517391 SH3PXD2AQ5TCZ1 1133 aa8.73□□□□□ -1.01
CPNE3-202ENST00000517391 DGKZQ13574 1117 aa8.72□□□□□ -1.01
CPNE3-202ENST00000517391 IFT43Q96FT9 208 aa8.72□□□□□ -1.01
CPNE3-202ENST00000517391 KRTAP9-9Q9BYP9 154 aa8.72□□□□□ -1.01
CPNE3-202ENST00000517391 KRTAP9-4Q9BYQ2 154 aa8.72□□□□□ -1.01
CPNE3-202ENST00000517391 CCDC87Q9NVE4 849 aa8.72□□□□□ -1.01
CPNE3-202ENST00000517391 MKL2Q9ULH7 1088 aa8.72□□□□□ -1.01
CPNE3-202ENST00000517391 PCSK2P16519 638 aa8.71□□□□□ -1.02
CPNE3-202ENST00000517391 MZF1P28698 734 aaPredicted RBP8.71□□□□□ -1.02
CPNE3-202ENST00000517391 ITGAEP38570 1179 aa8.71□□□□□ -1.02
CPNE3-202ENST00000517391 DSC3Q14574 896 aa8.71□□□□□ -1.02
CPNE3-202ENST00000517391 FAM13BQ9NYF5 915 aa8.71□□□□□ -1.02
CPNE3-202ENST00000517391 PARP3Q9Y6F1 533 aa8.71□□□□□ -1.02
CPNE3-202ENST00000517391 ZBTB39O15060 712 aa8.7□□□□□ -1.02
CPNE3-202ENST00000517391 FMR1Q06787 632 aaKnown RBP eCLIP8.7□□□□□ -1.02
CPNE3-202ENST00000517391 NBPF1Q3BBV0 1214 aa8.7□□□□□ -1.02
CPNE3-202ENST00000517391 NBPF10Q6P3W6 841 aaKnown RBP8.7□□□□□ -1.02
CPNE3-202ENST00000517391 ZNF837Q96EG3 531 aaPredicted RBP8.7□□□□□ -1.02
CPNE3-202ENST00000517391 FAM129BQ96TA1 746 aa8.7□□□□□ -1.02
CPNE3-202ENST00000517391 IGSF5Q9NSI5 407 aa8.7□□□□□ -1.02
CPNE3-202ENST00000517391 NSFL1CQ9UNZ2 370 aaKnown RBP8.7□□□□□ -1.02
CPNE3-202ENST00000517391 GPC6Q9Y625 555 aaPredicted RBP8.7□□□□□ -1.02
CPNE3-202ENST00000517391 SPATA31C2B4DYI2 1134 aa8.69□□□□□ -1.02
CPNE3-202ENST00000517391 OIP5O43482 229 aa8.69□□□□□ -1.02
CPNE3-202ENST00000517391 RPLP1P05386 114 aaKnown RBP8.69□□□□□ -1.02
CPNE3-202ENST00000517391 P4HBP07237 508 aaKnown RBP8.69□□□□□ -1.02
CPNE3-202ENST00000517391 ZAP70P43403 619 aa8.69□□□□□ -1.02
CPNE3-202ENST00000517391 ZMYM1Q5SVZ6 1142 aa8.69□□□□□ -1.02
CPNE3-202ENST00000517391 TRIM22Q8IYM9 498 aa8.69□□□□□ -1.02
CPNE3-202ENST00000517391 ALKBH8Q96BT7 664 aaKnown RBP8.69□□□□□ -1.02
CPNE3-202ENST00000517391 ZDHHC3Q9NYG2 299 aa8.69□□□□□ -1.02
CPNE3-202ENST00000517391 KLK14Q9P0G3 267 aa8.69□□□□□ -1.02
CPNE3-202ENST00000517391 PHKA2P46019 1235 aa8.68□□□□□ -1.02
CPNE3-202ENST00000517391 SNRPNP63162 240 aaKnown RBP8.68□□□□□ -1.02
CPNE3-202ENST00000517391 EHHADHQ08426 723 aa8.68□□□□□ -1.02
CPNE3-202ENST00000517391 C4orf17Q53FE4 359 aa8.68□□□□□ -1.02
CPNE3-202ENST00000517391 WDR44Q5JSH3 913 aa8.68□□□□□ -1.02
CPNE3-202ENST00000517391 ETFBKMTQ8IXQ9 262 aa8.68□□□□□ -1.02
CPNE3-202ENST00000517391 TIMMDC1Q9NPL8 285 aa8.68□□□□□ -1.02
CPNE3-202ENST00000517391 POLIQ9UNA4 740 aa8.68□□□□□ -1.02
CPNE3-202ENST00000517391 GPR25O00155 361 aa8.67□□□□□ -1.02
CPNE3-202ENST00000517391 TATP17735 454 aaPredicted RBP8.67□□□□□ -1.02
CPNE3-202ENST00000517391 TXLNAP40222 546 aa8.67□□□□□ -1.02
CPNE3-202ENST00000517391 PLA2G4AP47712 749 aa8.67□□□□□ -1.02
CPNE3-202ENST00000517391 TAGLNQ01995 201 aaKnown RBP8.67□□□□□ -1.02
CPNE3-202ENST00000517391 DNM1Q05193 864 aaKnown RBP8.67□□□□□ -1.02
CPNE3-202ENST00000517391 FAM26DQ5JW98 314 aa8.67□□□□□ -1.02
CPNE3-202ENST00000517391 ATCAYQ86WG3 371 aa8.67□□□□□ -1.02
CPNE3-202ENST00000517391 TREML1Q86YW5 311 aa8.67□□□□□ -1.02
CPNE3-202ENST00000517391 GJD3Q8N144 294 aa8.67□□□□□ -1.02
CPNE3-202ENST00000517391 TTC16Q8NEE8 873 aa8.67□□□□□ -1.02
CPNE3-202ENST00000517391 RHPN1Q8TCX5 695 aa8.67□□□□□ -1.02
CPNE3-202ENST00000517391 AIDAQ96BJ3 306 aa8.67□□□□□ -1.02
CPNE3-202ENST00000517391 GAS2L1Q99501 681 aaPredicted RBP8.67□□□□□ -1.02
CPNE3-202ENST00000517391 ANKIB1Q9P2G1 1089 aa8.67□□□□□ -1.02
CPNE3-202ENST00000517391 DCAF1Q9Y4B6 1507 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms