RNA–Protein interactions for RNA: ENST00000515289.2

NPHP3-211, Transcript of nephrocystin 3, humanhuman

TSL 3

Gene NPHP3, Length 556 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-211ENST00000515289 LILRA1O75019 489 aa9.44□□□□□ -0.9
NPHP3-211ENST00000515289 MEI1Q5TIA1 1274 aa9.44□□□□□ -0.9
NPHP3-211ENST00000515289 NYAP1Q6ZVC0 841 aa9.44□□□□□ -0.9
NPHP3-211ENST00000515289 CERS3Q8IU89 383 aa9.44□□□□□ -0.9
NPHP3-211ENST00000515289 TTC16Q8NEE8 873 aa9.44□□□□□ -0.9
NPHP3-211ENST00000515289 NKX2-3Q8TAU0 364 aa9.44□□□□□ -0.9
NPHP3-211ENST00000515289 MTRQ99707 1265 aa9.44□□□□□ -0.9
NPHP3-211ENST00000515289 FAM13BQ9NYF5 915 aa9.44□□□□□ -0.9
NPHP3-211ENST00000515289 EEA1Q15075 1411 aa9.44□□□□□ -0.9
NPHP3-211ENST00000515289 TOP2BQ02880 1626 aa9.44□□□□□ -0.9
NPHP3-211ENST00000515289 BIVM-ERCC5R4GMW8 1640 aa9.43□□□□□ -0.9
NPHP3-211ENST00000515289 C8orf34Q49A92 452 aa9.43□□□□□ -0.9
NPHP3-211ENST00000515289 CCDC181Q5TID7 509 aa9.43□□□□□ -0.9
NPHP3-211ENST00000515289 GPR152Q8TDT2 470 aa9.43□□□□□ -0.9
NPHP3-211ENST00000515289 CDK15Q96Q40 435 aa9.43□□□□□ -0.9
NPHP3-211ENST00000515289 SRCIN1Q9C0H9 1055 aa9.43□□□□□ -0.9
NPHP3-211ENST00000515289 GGNBP2Q9H3C7 697 aa9.43□□□□□ -0.9
NPHP3-211ENST00000515289 KLK14Q9P0G3 267 aa9.43□□□□□ -0.9
NPHP3-211ENST00000515289 CUX1P39880 1505 aa9.42□□□□□ -0.9
NPHP3-211ENST00000515289 FSHRP23945 695 aa9.42□□□□□ -0.9
NPHP3-211ENST00000515289 NOS2P35228 1153 aa9.42□□□□□ -0.9
NPHP3-211ENST00000515289 TLR1Q15399 786 aa9.42□□□□□ -0.9
NPHP3-211ENST00000515289 DHX37Q8IY37 1157 aaKnown RBP9.42□□□□□ -0.9
NPHP3-211ENST00000515289 RAB6BQ9NRW1 208 aa9.42□□□□□ -0.9
NPHP3-211ENST00000515289 KLHL42Q9P2K6 505 aa9.42□□□□□ -0.9
NPHP3-211ENST00000515289 PPME1Q9Y570 386 aa9.42□□□□□ -0.9
NPHP3-211ENST00000515289 COL4A3BPQ9Y5P4 624 aa9.42□□□□□ -0.9
NPHP3-211ENST00000515289 RUSC2Q8N2Y8 1516 aa9.41□□□□□ -0.9
NPHP3-211ENST00000515289 S1PR4O95977 384 aa9.41□□□□□ -0.9
NPHP3-211ENST00000515289 IL2RAP01589 272 aa9.41□□□□□ -0.9
NPHP3-211ENST00000515289 SSBP05455 408 aaKnown RBP eCLIP9.41□□□□□ -0.9
NPHP3-211ENST00000515289 SH3PXD2AQ5TCZ1 1133 aa9.41□□□□□ -0.9
NPHP3-211ENST00000515289 TREML1Q86YW5 311 aa9.41□□□□□ -0.9
NPHP3-211ENST00000515289 ZDHHC1Q8WTX9 485 aa9.41□□□□□ -0.9
NPHP3-211ENST00000515289 CCDC74AQ96AQ1 378 aa9.41□□□□□ -0.9
NPHP3-211ENST00000515289 ARHGEF10LQ9HCE6 1279 aa9.41□□□□□ -0.9
NPHP3-211ENST00000515289 NEUROD4Q9HD90 331 aa9.41□□□□□ -0.9
NPHP3-211ENST00000515289 SIRPGQ9P1W8 387 aa9.41□□□□□ -0.9
NPHP3-211ENST00000515289 ZNF232Q9UNY5 417 aa9.41□□□□□ -0.9
NPHP3-211ENST00000515289 HRH3Q9Y5N1 445 aa9.41□□□□□ -0.9
NPHP3-211ENST00000515289 PRDM2Q13029 1718 aa9.4□□□□□ -0.9
NPHP3-211ENST00000515289 USP17L7P0C7H9 530 aa9.4□□□□□ -0.9
NPHP3-211ENST00000515289 NFX1Q12986 1120 aaKnown RBP9.4□□□□□ -0.9
NPHP3-211ENST00000515289 PI16Q6UXB8 463 aa9.4□□□□□ -0.9
NPHP3-211ENST00000515289 IL21Q9HBE4 155 aa9.4□□□□□ -0.9
NPHP3-211ENST00000515289 HCN4Q9Y3Q4 1203 aa9.4□□□□□ -0.9
NPHP3-211ENST00000515289 POTECB2RU33 542 aa9.39□□□□□ -0.91
NPHP3-211ENST00000515289 FILIP1Q7Z7B0 1213 aa9.39□□□□□ -0.91
NPHP3-211ENST00000515289 ZNF295-AS1Q8N0V1 137 aa9.39□□□□□ -0.91
NPHP3-211ENST00000515289 EPS8L3Q8TE67 593 aaKnown RBP9.39□□□□□ -0.91
NPHP3-211ENST00000515289 L3MBTL2Q969R5 705 aa9.39□□□□□ -0.91
NPHP3-211ENST00000515289 ESYT1Q9BSJ8 1104 aa9.39□□□□□ -0.91
NPHP3-211ENST00000515289 PHACTR1Q9C0D0 580 aa9.39□□□□□ -0.91
NPHP3-211ENST00000515289 ZNF408Q9H9D4 720 aa9.39□□□□□ -0.91
NPHP3-211ENST00000515289 COPRSQ9NQ92 184 aa9.39□□□□□ -0.91
NPHP3-211ENST00000515289 IFT57Q9NWB7 429 aa9.39□□□□□ -0.91
NPHP3-211ENST00000515289 FAM205CA6NFA0 338 aa9.38□□□□□ -0.91
NPHP3-211ENST00000515289 A6NHS1 94 aa9.38□□□□□ -0.91
NPHP3-211ENST00000515289 GRM5P41594 1212 aa9.38□□□□□ -0.91
NPHP3-211ENST00000515289 TRIM32Q13049 653 aa9.38□□□□□ -0.91
NPHP3-211ENST00000515289 ARID5BQ14865 1188 aa9.38□□□□□ -0.91
NPHP3-211ENST00000515289 PLEKHG4Q58EX7 1191 aa9.38□□□□□ -0.91
NPHP3-211ENST00000515289 C1orf53Q5VUE5 145 aa9.38□□□□□ -0.91
NPHP3-211ENST00000515289 CNKSR1Q969H4 720 aa9.38□□□□□ -0.91
NPHP3-211ENST00000515289 RNPC3Q96LT9 517 aaKnown RBP9.38□□□□□ -0.91
NPHP3-211ENST00000515289 SPON2Q9BUD6 331 aa9.38□□□□□ -0.91
NPHP3-211ENST00000515289 NOC4LQ9BVI4 516 aaKnown RBP9.38□□□□□ -0.91
NPHP3-211ENST00000515289 TMX1Q9H3N1 280 aa9.38□□□□□ -0.91
NPHP3-211ENST00000515289 PCDH12Q9NPG4 1184 aa9.38□□□□□ -0.91
NPHP3-211ENST00000515289 TNFRSF21O75509 655 aa9.37□□□□□ -0.91
NPHP3-211ENST00000515289 IRS1P35568 1242 aa9.37□□□□□ -0.91
NPHP3-211ENST00000515289 ADD1P35611 737 aaKnown RBP9.37□□□□□ -0.91
NPHP3-211ENST00000515289 TJAP1Q5JTD0 557 aa9.37□□□□□ -0.91
NPHP3-211ENST00000515289 PPP1R26Q5T8A7 1209 aaPredicted RBP9.37□□□□□ -0.91
NPHP3-211ENST00000515289 USPL1Q5W0Q7 1092 aa9.37□□□□□ -0.91
NPHP3-211ENST00000515289 KIAA0825Q8IV33 1275 aa9.37□□□□□ -0.91
NPHP3-211ENST00000515289 CCDC116Q8IYX3 515 aa9.37□□□□□ -0.91
NPHP3-211ENST00000515289 SNX29Q8TEQ0 813 aa9.37□□□□□ -0.91
NPHP3-211ENST00000515289 ZNF516Q92618 1163 aa9.37□□□□□ -0.91
NPHP3-211ENST00000515289 SRPK1Q96SB4 655 aaKnown RBP9.37□□□□□ -0.91
NPHP3-211ENST00000515289 KBTBD4Q9NVX7 518 aa9.37□□□□□ -0.91
NPHP3-211ENST00000515289 STRIP2Q9ULQ0 834 aa9.37□□□□□ -0.91
NPHP3-211ENST00000515289 SUGT1Q9Y2Z0 365 aa9.37□□□□□ -0.91
NPHP3-211ENST00000515289 PRKAB1Q9Y478 270 aa9.37□□□□□ -0.91
NPHP3-211ENST00000515289 DNAJC6O75061 913 aa9.36□□□□□ -0.91
NPHP3-211ENST00000515289 SKOR1P84550 965 aa9.36□□□□□ -0.91
NPHP3-211ENST00000515289 XKR5Q6UX68 686 aa9.36□□□□□ -0.91
NPHP3-211ENST00000515289 THSD4Q6ZMP0 1018 aa9.36□□□□□ -0.91
NPHP3-211ENST00000515289 MPNDQ8N594 471 aa9.36□□□□□ -0.91
NPHP3-211ENST00000515289 SPC25Q9HBM1 224 aa9.36□□□□□ -0.91
NPHP3-211ENST00000515289 CABP1Q9NZU7 370 aa9.36□□□□□ -0.91
NPHP3-211ENST00000515289 LRP10Q7Z4F1 713 aa9.35□□□□□ -0.91
NPHP3-211ENST00000515289 RSRP1Q9BUV0 290 aa9.35□□□□□ -0.91
NPHP3-211ENST00000515289 TRIM55Q9BYV6 548 aa9.35□□□□□ -0.91
NPHP3-211ENST00000515289 FHDC1Q9C0D6 1143 aaPredicted RBP9.35□□□□□ -0.91
NPHP3-211ENST00000515289 FOXD3Q9UJU5 478 aaPredicted RBP9.35□□□□□ -0.91
NPHP3-211ENST00000515289 FANCD2Q9BXW9 1451 aa9.34□□□□□ -0.91
NPHP3-211ENST00000515289 KLF4O43474 513 aa9.34□□□□□ -0.91
NPHP3-211ENST00000515289 NASPP49321 788 aaPredicted RBP9.34□□□□□ -0.91
NPHP3-211ENST00000515289 PWP1Q13610 501 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms