RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 CACNA1FO60840 1977 aa11.44□□□□□ -0.58
VCAN-210ENST00000513960 CEBPZQ03701 1054 aaKnown RBP11.44□□□□□ -0.58
VCAN-210ENST00000513960 ANKRD24Q8TF21 1146 aa11.44□□□□□ -0.58
VCAN-210ENST00000513960 NUP62CLQ9H1M0 184 aa11.44□□□□□ -0.58
VCAN-210ENST00000513960 ADGRL3Q9HAR2 1447 aa11.44□□□□□ -0.58
VCAN-210ENST00000513960 GOLGA6L19H0YKK7 550 aa11.44□□□□□ -0.58
VCAN-210ENST00000513960 TPM3P06753 285 aa11.44□□□□□ -0.58
VCAN-210ENST00000513960 SYT1P21579 422 aa11.44□□□□□ -0.58
VCAN-210ENST00000513960 BEND3Q5T5X7 828 aa11.44□□□□□ -0.58
VCAN-210ENST00000513960 FILIP1Q7Z7B0 1213 aa11.44□□□□□ -0.58
VCAN-210ENST00000513960 TNMDQ9H2S6 317 aa11.44□□□□□ -0.58
VCAN-210ENST00000513960 TFIP11Q9UBB9 837 aaKnown RBP11.44□□□□□ -0.58
VCAN-210ENST00000513960 FAM208AQ9UK61 1670 aaKnown RBP11.44□□□□□ -0.58
VCAN-210ENST00000513960 RNMTO43148 476 aaKnown RBP11.44□□□□□ -0.58
VCAN-210ENST00000513960 GORABQ5T7V8 394 aa11.43□□□□□ -0.58
VCAN-210ENST00000513960 ARHGEF25Q86VW2 580 aa11.43□□□□□ -0.58
VCAN-210ENST00000513960 UNC5CLQ8IV45 518 aa11.43□□□□□ -0.58
VCAN-210ENST00000513960 CNTROBQ8N137 903 aa11.43□□□□□ -0.58
VCAN-210ENST00000513960 NECAB1Q8N987 351 aa11.43□□□□□ -0.58
VCAN-210ENST00000513960 GJB2P29033 226 aa11.43□□□□□ -0.58
VCAN-210ENST00000513960 STK3Q13188 491 aa11.43□□□□□ -0.58
VCAN-210ENST00000513960 POLA2Q14181 598 aa11.43□□□□□ -0.58
VCAN-210ENST00000513960 MAP3K11Q16584 847 aa11.43□□□□□ -0.58
VCAN-210ENST00000513960 F13A1P00488 732 aa11.43□□□□□ -0.58
VCAN-210ENST00000513960 AK2P54819 239 aa11.43□□□□□ -0.58
VCAN-210ENST00000513960 CLASRPQ8N2M8 674 aaKnown RBP11.43□□□□□ -0.58
VCAN-210ENST00000513960 KIAA1524Q8TCG1 905 aa11.43□□□□□ -0.58
VCAN-210ENST00000513960 JAKMIP1Q96N16 626 aaKnown RBP11.43□□□□□ -0.58
VCAN-210ENST00000513960 NRBP1Q9UHY1 535 aa11.43□□□□□ -0.58
VCAN-210ENST00000513960 BECN2A8MW95 431 aa11.42□□□□□ -0.58
VCAN-210ENST00000513960 PROSER2Q86WR7 435 aaPredicted RBP11.42□□□□□ -0.58
VCAN-210ENST00000513960 MAP3K2Q9Y2U5 619 aa11.42□□□□□ -0.58
VCAN-210ENST00000513960 INTS4Q96HW7 963 aaKnown RBP11.42□□□□□ -0.58
VCAN-210ENST00000513960 TCEANC2Q96MN5 208 aa11.42□□□□□ -0.58
VCAN-210ENST00000513960 OGFRQ9NZT2 677 aa11.42□□□□□ -0.58
VCAN-210ENST00000513960 LTN1O94822 1766 aa11.42□□□□□ -0.58
VCAN-210ENST00000513960 ANO6Q4KMQ2 910 aa11.42□□□□□ -0.58
VCAN-210ENST00000513960 LARP1BQ659C4 914 aaKnown RBP11.42□□□□□ -0.58
VCAN-210ENST00000513960 KRT28Q7Z3Y7 464 aa11.42□□□□□ -0.58
VCAN-210ENST00000513960 CCDC66A2RUB6 948 aa11.41□□□□□ -0.58
VCAN-210ENST00000513960 DDX58O95786 925 aaKnown RBP11.41□□□□□ -0.58
VCAN-210ENST00000513960 GPATCH3Q96I76 525 aa11.41□□□□□ -0.58
VCAN-210ENST00000513960 KCNF1Q9H3M0 494 aa11.41□□□□□ -0.58
VCAN-210ENST00000513960 CLIP2Q9UDT6 1046 aa11.41□□□□□ -0.58
VCAN-210ENST00000513960 ZRSR1Q15695 479 aaKnown RBP11.41□□□□□ -0.58
VCAN-210ENST00000513960 NFAT5O94916 1531 aa11.41□□□□□ -0.58
VCAN-210ENST00000513960 ALDH1L1O75891 902 aa11.41□□□□□ -0.58
VCAN-210ENST00000513960 KSR2Q6VAB6 950 aa11.41□□□□□ -0.58
VCAN-210ENST00000513960 LIMCH1Q9UPQ0 1083 aa11.41□□□□□ -0.58
VCAN-210ENST00000513960 MARF1Q9Y4F3 1742 aaKnown RBP11.41□□□□□ -0.58
VCAN-210ENST00000513960 GIGYF1O75420 1035 aaPredicted RBP11.4□□□□□ -0.58
VCAN-210ENST00000513960 TNNT3P45378 269 aaPredicted RBP11.4□□□□□ -0.58
VCAN-210ENST00000513960 AIMP1Q12904 312 aaKnown RBP11.4□□□□□ -0.58
VCAN-210ENST00000513960 PRPF40BQ6NWY9 871 aaKnown RBP11.4□□□□□ -0.58
VCAN-210ENST00000513960 RAPGEF4Q8WZA2 1011 aa11.4□□□□□ -0.58
VCAN-210ENST00000513960 ZBTB9Q96C00 473 aa11.4□□□□□ -0.58
VCAN-210ENST00000513960 HYPKQ9NX55 129 aa11.4□□□□□ -0.58
VCAN-210ENST00000513960 USP54Q70EL1 1684 aa11.4□□□□□ -0.58
VCAN-210ENST00000513960 EPB41L2O43491 1005 aaKnown RBP11.4□□□□□ -0.58
VCAN-210ENST00000513960 GLRX3O76003 335 aaKnown RBP11.4□□□□□ -0.58
VCAN-210ENST00000513960 IFIT2P09913 472 aaKnown RBP11.4□□□□□ -0.58
VCAN-210ENST00000513960 ZC3H6P61129 1189 aaKnown RBP11.4□□□□□ -0.58
VCAN-210ENST00000513960 KRT85P78386 507 aa11.4□□□□□ -0.58
VCAN-210ENST00000513960 CUL4AQ13619 759 aa11.4□□□□□ -0.58
VCAN-210ENST00000513960 PDRG1Q9NUG6 133 aa11.4□□□□□ -0.58
VCAN-210ENST00000513960 CHD2O14647 1828 aaKnown RBP11.4□□□□□ -0.58
VCAN-210ENST00000513960 TYRO3Q06418 890 aa11.4□□□□□ -0.59
VCAN-210ENST00000513960 ERC1Q8IUD2 1116 aa11.4□□□□□ -0.59
VCAN-210ENST00000513960 FAM200AQ8TCP9 573 aa11.4□□□□□ -0.59
VCAN-210ENST00000513960 SYTL4Q96C24 671 aaPredicted RBP11.4□□□□□ -0.59
VCAN-210ENST00000513960 HSP90B1P14625 803 aaKnown RBP11.39□□□□□ -0.59
VCAN-210ENST00000513960 NCBP1Q09161 790 aaKnown RBP11.39□□□□□ -0.59
VCAN-210ENST00000513960 CEP135Q66GS9 1140 aa11.39□□□□□ -0.59
VCAN-210ENST00000513960 PI4K2BQ8TCG2 481 aa11.39□□□□□ -0.59
VCAN-210ENST00000513960 RUFY2Q8WXA3 655 aa11.39□□□□□ -0.59
VCAN-210ENST00000513960 DNAJC25Q9H1X3 360 aa11.39□□□□□ -0.59
VCAN-210ENST00000513960 DACT1Q9NYF0 836 aa11.39□□□□□ -0.59
VCAN-210ENST00000513960 NPHP4O75161 1426 aaPredicted RBP11.39□□□□□ -0.59
VCAN-210ENST00000513960 AP5Z1O43299 807 aa11.39□□□□□ -0.59
VCAN-210ENST00000513960 NLRP2Q9NX02 1062 aa11.39□□□□□ -0.59
VCAN-210ENST00000513960 ADCY9O60503 1353 aa11.39□□□□□ -0.59
VCAN-210ENST00000513960 NCAPD2Q15021 1401 aa11.39□□□□□ -0.59
VCAN-210ENST00000513960 SPATA32Q96LK8 384 aa11.39□□□□□ -0.59
VCAN-210ENST00000513960 FEZ1Q99689 392 aa11.39□□□□□ -0.59
VCAN-210ENST00000513960 SGSM2O43147 1006 aa11.38□□□□□ -0.59
VCAN-210ENST00000513960 HSPA4P34932 840 aa11.38□□□□□ -0.59
VCAN-210ENST00000513960 CWF19L2Q2TBE0 894 aaKnown RBP11.38□□□□□ -0.59
VCAN-210ENST00000513960 TTC41PQ6P2S7 1318 aa11.38□□□□□ -0.59
VCAN-210ENST00000513960 PTPN14Q15678 1187 aa11.38□□□□□ -0.59
VCAN-210ENST00000513960 PROSER3Q2NL68 480 aa11.38□□□□□ -0.59
VCAN-210ENST00000513960 RIC3Q7Z5B4 369 aa11.38□□□□□ -0.59
VCAN-210ENST00000513960 SPTLC3Q9NUV7 552 aa11.38□□□□□ -0.59
VCAN-210ENST00000513960 SMTNL1A8MU46 457 aa11.38□□□□□ -0.59
VCAN-210ENST00000513960 H3BQV1 296 aa11.38□□□□□ -0.59
VCAN-210ENST00000513960 GTF2F1P35269 517 aaKnown RBP eCLIP11.38□□□□□ -0.59
VCAN-210ENST00000513960 ZNF165P49910 485 aa11.38□□□□□ -0.59
VCAN-210ENST00000513960 IFFO2Q5TF58 517 aa11.38□□□□□ -0.59
VCAN-210ENST00000513960 KRT222Q8N1A0 295 aa11.38□□□□□ -0.59
VCAN-210ENST00000513960 AXIN2Q9Y2T1 843 aa11.38□□□□□ -0.59
VCAN-210ENST00000513960 CSB-PGBD3P0DP91 1061 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms