RNA–Protein interactions for RNA: ENST00000512234.1

SQSTM1-214, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 1,722 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-214ENST00000512234 YBX3P16989 372 aaKnown RBP eCLIP19.6■□□□□ 0.73
SQSTM1-214ENST00000512234 ST5P78524 1137 aa19.6■□□□□ 0.73
SQSTM1-214ENST00000512234 HSP90AB3PQ58FF7 597 aa19.6■□□□□ 0.73
SQSTM1-214ENST00000512234 C2CD5Q86YS7 1000 aa19.6■□□□□ 0.73
SQSTM1-214ENST00000512234 UTP14AQ9BVJ6 771 aaKnown RBP19.6■□□□□ 0.73
SQSTM1-214ENST00000512234 ANKRD31Q8N7Z5 1873 aa19.6■□□□□ 0.73
SQSTM1-214ENST00000512234 KIAA1551Q9HCM1 1747 aa19.6■□□□□ 0.73
SQSTM1-214ENST00000512234 RGL2O15211 777 aa19.59■□□□□ 0.73
SQSTM1-214ENST00000512234 DNAAF4Q8WXU2 420 aa19.59■□□□□ 0.73
SQSTM1-214ENST00000512234 TNNQ9UQP3 1299 aa19.59■□□□□ 0.73
SQSTM1-214ENST00000512234 PARP10Q53GL7 1025 aa19.59■□□□□ 0.73
SQSTM1-214ENST00000512234 SLC4A10Q6U841 1118 aa19.59■□□□□ 0.73
SQSTM1-214ENST00000512234 SLC51AQ86UW1 340 aa19.59■□□□□ 0.73
SQSTM1-214ENST00000512234 BRIP1Q9BX63 1249 aa19.59■□□□□ 0.73
SQSTM1-214ENST00000512234 NOB1Q9ULX3 412 aaKnown RBP19.59■□□□□ 0.73
SQSTM1-214ENST00000512234 KIF13BQ9NQT8 1826 aa19.58■□□□□ 0.73
SQSTM1-214ENST00000512234 TGFB2P61812 414 aa19.58■□□□□ 0.72
SQSTM1-214ENST00000512234 PPP1R42Q7Z4L9 355 aa19.58■□□□□ 0.72
SQSTM1-214ENST00000512234 ANKRD36CQ5JPF3 1778 aa19.58■□□□□ 0.72
SQSTM1-214ENST00000512234 GPR162Q16538 588 aa19.57■□□□□ 0.72
SQSTM1-214ENST00000512234 ALDH1L2Q3SY69 923 aa19.57■□□□□ 0.72
SQSTM1-214ENST00000512234 ZNF622Q969S3 477 aaKnown RBP eCLIP19.57■□□□□ 0.72
SQSTM1-214ENST00000512234 ZNF219Q9P2Y4 722 aaPredicted RBP19.57■□□□□ 0.72
SQSTM1-214ENST00000512234 TNRC6CQ9HCJ0 1690 aaKnown RBP19.57■□□□□ 0.72
SQSTM1-214ENST00000512234 NYXQ9GZU5 481 aa19.56■□□□□ 0.72
SQSTM1-214ENST00000512234 BCS1LQ9Y276 419 aa19.56■□□□□ 0.72
SQSTM1-214ENST00000512234 NEURL1BA8MQ27 555 aa19.56■□□□□ 0.72
SQSTM1-214ENST00000512234 H0YIN7 160 aa19.55■□□□□ 0.72
SQSTM1-214ENST00000512234 FRAT1Q92837 279 aaPredicted RBP19.55■□□□□ 0.72
SQSTM1-214ENST00000512234 CWC25Q9NXE8 425 aaPredicted RBP19.55■□□□□ 0.72
SQSTM1-214ENST00000512234 CT47B1P0C2W7 299 aaPredicted RBP19.54■□□□□ 0.72
SQSTM1-214ENST00000512234 PDE6BP35913 854 aa19.54■□□□□ 0.72
SQSTM1-214ENST00000512234 NEXNQ0ZGT2 675 aa19.54■□□□□ 0.72
SQSTM1-214ENST00000512234 TRIM28Q13263 835 aaKnown RBP19.54■□□□□ 0.72
SQSTM1-214ENST00000512234 BEND3Q5T5X7 828 aa19.54■□□□□ 0.72
SQSTM1-214ENST00000512234 COL11A2P13942 1736 aaPredicted RBP19.54■□□□□ 0.72
SQSTM1-214ENST00000512234 SH3TC1Q8TE82 1336 aa19.54■□□□□ 0.72
SQSTM1-214ENST00000512234 CCDC85AQ96PX6 553 aaPredicted RBP19.54■□□□□ 0.72
SQSTM1-214ENST00000512234 SRGNP10124 158 aa19.53■□□□□ 0.72
SQSTM1-214ENST00000512234 OLFM4Q6UX06 510 aa19.53■□□□□ 0.72
SQSTM1-214ENST00000512234 CCDC191Q8NCU4 936 aa19.53■□□□□ 0.72
SQSTM1-214ENST00000512234 PIM2Q9P1W9 311 aa19.53■□□□□ 0.72
SQSTM1-214ENST00000512234 IRS4O14654 1257 aaPredicted RBP19.52■□□□□ 0.72
SQSTM1-214ENST00000512234 GCKRQ14397 625 aa19.51■□□□□ 0.71
SQSTM1-214ENST00000512234 UBE3BQ7Z3V4 1068 aa19.51■□□□□ 0.71
SQSTM1-214ENST00000512234 LINS1Q8NG48 757 aa19.51■□□□□ 0.71
SQSTM1-214ENST00000512234 CACNA1FO60840 1977 aa19.51■□□□□ 0.71
SQSTM1-214ENST00000512234 IBTKQ9P2D0 1353 aaPredicted RBP19.51■□□□□ 0.71
SQSTM1-214ENST00000512234 SLC10A5Q5PT55 438 aa19.51■□□□□ 0.71
SQSTM1-214ENST00000512234 ZBTB38Q8NAP3 1195 aaPredicted RBP19.51■□□□□ 0.71
SQSTM1-214ENST00000512234 CLUAP1Q96AJ1 413 aa19.51■□□□□ 0.71
SQSTM1-214ENST00000512234 KLRG2A4D1S0 409 aaPredicted RBP19.5■□□□□ 0.71
SQSTM1-214ENST00000512234 DALRD3Q5D0E6 543 aaKnown RBP19.5■□□□□ 0.71
SQSTM1-214ENST00000512234 PTPRCP08575 1304 aa19.5■□□□□ 0.71
SQSTM1-214ENST00000512234 PCCAP05165 728 aaPredicted RBP19.49■□□□□ 0.71
SQSTM1-214ENST00000512234 NLRP3Q96P20 1036 aa19.49■□□□□ 0.71
SQSTM1-214ENST00000512234 TTLL6Q8N841 843 aa19.48■□□□□ 0.71
SQSTM1-214ENST00000512234 MASTLQ96GX5 879 aa19.48■□□□□ 0.71
SQSTM1-214ENST00000512234 H7C1W4 665 aa19.48■□□□□ 0.71
SQSTM1-214ENST00000512234 C21orf2O43822 256 aa19.48■□□□□ 0.71
SQSTM1-214ENST00000512234 CRY2Q49AN0 593 aa19.48■□□□□ 0.71
SQSTM1-214ENST00000512234 SRCIN1Q9C0H9 1055 aa19.48■□□□□ 0.71
SQSTM1-214ENST00000512234 COL4A1P02462 1669 aa19.47■□□□□ 0.71
SQSTM1-214ENST00000512234 PLIN1O60240 522 aa19.47■□□□□ 0.71
SQSTM1-214ENST00000512234 NPR1P16066 1061 aa19.47■□□□□ 0.71
SQSTM1-214ENST00000512234 CASP7P55210 303 aa19.47■□□□□ 0.71
SQSTM1-214ENST00000512234 PRPF40BQ6NWY9 871 aaKnown RBP19.47■□□□□ 0.71
SQSTM1-214ENST00000512234 RPGRQ92834 1020 aaKnown RBP19.47■□□□□ 0.71
SQSTM1-214ENST00000512234 BRCA1P38398 1863 aaKnown RBP19.47■□□□□ 0.71
SQSTM1-214ENST00000512234 DDX60Q8IY21 1712 aaKnown RBP19.47■□□□□ 0.71
SQSTM1-214ENST00000512234 TRIM27P14373 513 aa19.46■□□□□ 0.71
SQSTM1-214ENST00000512234 BRPF1P55201 1214 aaPredicted RBP19.46■□□□□ 0.71
SQSTM1-214ENST00000512234 NBPF7P0C2Y1 421 aaPredicted RBP19.45■□□□□ 0.7
SQSTM1-214ENST00000512234 STYK1Q6J9G0 422 aa19.45■□□□□ 0.7
SQSTM1-214ENST00000512234 ARHGAP27Q6ZUM4 889 aa19.45■□□□□ 0.7
SQSTM1-214ENST00000512234 SEC31BQ9NQW1 1179 aa19.45■□□□□ 0.7
SQSTM1-214ENST00000512234 SLX4Q8IY92 1834 aa19.45■□□□□ 0.7
SQSTM1-214ENST00000512234 TAF1P21675 1872 aa19.45■□□□□ 0.7
SQSTM1-214ENST00000512234 CACNA1SQ13698 1873 aa19.45■□□□□ 0.7
SQSTM1-214ENST00000512234 EPHA10Q5JZY3 1008 aa19.45■□□□□ 0.7
SQSTM1-214ENST00000512234 RCAN3Q9UKA8 241 aa19.45■□□□□ 0.7
SQSTM1-214ENST00000512234 LAMB2P55268 1798 aa19.44■□□□□ 0.7
SQSTM1-214ENST00000512234 C9orf78Q9NZ63 289 aaPredicted RBP19.44■□□□□ 0.7
SQSTM1-214ENST00000512234 ABCC4O15439 1325 aa19.44■□□□□ 0.7
SQSTM1-214ENST00000512234 RNF123Q5XPI4 1314 aa19.44■□□□□ 0.7
SQSTM1-214ENST00000512234 DLEC1Q9Y238 1755 aa19.43■□□□□ 0.7
SQSTM1-214ENST00000512234 DCAF8L1A6NGE4 600 aa19.43■□□□□ 0.7
SQSTM1-214ENST00000512234 GRM8O00222 908 aa19.43■□□□□ 0.7
SQSTM1-214ENST00000512234 API5Q9BZZ5 524 aaKnown RBP19.43■□□□□ 0.7
SQSTM1-214ENST00000512234 KIF16BQ96L93 1317 aa19.43■□□□□ 0.7
SQSTM1-214ENST00000512234 RLBP1P12271 317 aa19.42■□□□□ 0.7
SQSTM1-214ENST00000512234 RASSF7Q02833 373 aa19.42■□□□□ 0.7
SQSTM1-214ENST00000512234 ATF7IPQ6VMQ6 1270 aa19.42■□□□□ 0.7
SQSTM1-214ENST00000512234 CELF1Q92879 486 aaKnown RBP19.42■□□□□ 0.7
SQSTM1-214ENST00000512234 CNKSR1Q969H4 720 aa19.42■□□□□ 0.7
SQSTM1-214ENST00000512234 RBM17Q96I25 401 aaKnown RBP19.42■□□□□ 0.7
SQSTM1-214ENST00000512234 PDE8AO60658 829 aa19.42■□□□□ 0.7
SQSTM1-214ENST00000512234 ALDH1L1O75891 902 aa19.42■□□□□ 0.7
SQSTM1-214ENST00000512234 HOXA10P31260 410 aaPredicted RBP19.42■□□□□ 0.7
SQSTM1-214ENST00000512234 SUCLG2Q96I99 432 aa19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms