RNA–Protein interactions for RNA: ENST00000512228.5

LIMCH1-214, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-214ENST00000512228 FKBP4Q02790 459 aaKnown RBP eCLIP14.66□□□□□ -0.06
LIMCH1-214ENST00000512228 CCDC93Q567U6 631 aa14.66□□□□□ -0.06
LIMCH1-214ENST00000512228 DPY19L2Q6NUT2 758 aa14.66□□□□□ -0.06
LIMCH1-214ENST00000512228 SMC1BQ8NDV3 1235 aa14.66□□□□□ -0.06
LIMCH1-214ENST00000512228 ERBB4Q15303 1308 aa14.66□□□□□ -0.06
LIMCH1-214ENST00000512228 ZNF541Q9H0D2 1346 aa14.66□□□□□ -0.06
LIMCH1-214ENST00000512228 ALDH1B1P30837 517 aa14.65□□□□□ -0.06
LIMCH1-214ENST00000512228 SLC10A5Q5PT55 438 aa14.65□□□□□ -0.06
LIMCH1-214ENST00000512228 NYXQ9GZU5 481 aa14.65□□□□□ -0.06
LIMCH1-214ENST00000512228 CHPF2Q9P2E5 772 aa14.65□□□□□ -0.06
LIMCH1-214ENST00000512228 APAF1O14727 1248 aa14.64□□□□□ -0.07
LIMCH1-214ENST00000512228 WDR43Q15061 677 aaKnown RBP eCLIP14.64□□□□□ -0.07
LIMCH1-214ENST00000512228 SOGA3Q5TF21 947 aa14.64□□□□□ -0.07
LIMCH1-214ENST00000512228 LAMB2P55268 1798 aa14.63□□□□□ -0.07
LIMCH1-214ENST00000512228 ZNF853P0CG23 659 aa14.63□□□□□ -0.07
LIMCH1-214ENST00000512228 LMOD3Q0VAK6 560 aa14.63□□□□□ -0.07
LIMCH1-214ENST00000512228 NLRP10Q86W26 655 aa14.63□□□□□ -0.07
LIMCH1-214ENST00000512228 RTKN2Q8IZC4 609 aa14.63□□□□□ -0.07
LIMCH1-214ENST00000512228 DDX21Q9NR30 783 aaKnown RBP eCLIP14.63□□□□□ -0.07
LIMCH1-214ENST00000512228 MBIPQ9NS73 344 aa14.63□□□□□ -0.07
LIMCH1-214ENST00000512228 FZD9O00144 591 aa14.62□□□□□ -0.07
LIMCH1-214ENST00000512228 HCLS1P14317 486 aaPredicted RBP14.62□□□□□ -0.07
LIMCH1-214ENST00000512228 IARSP41252 1262 aaKnown RBP14.62□□□□□ -0.07
LIMCH1-214ENST00000512228 TCIRG1Q13488 830 aa14.62□□□□□ -0.07
LIMCH1-214ENST00000512228 KLRG1Q96E93 195 aa14.62□□□□□ -0.07
LIMCH1-214ENST00000512228 CRAMP1Q96RY5 1269 aa14.62□□□□□ -0.07
LIMCH1-214ENST00000512228 UTP14AQ9BVJ6 771 aaKnown RBP14.62□□□□□ -0.07
LIMCH1-214ENST00000512228 ANKRD36CQ5JPF3 1778 aa14.62□□□□□ -0.07
LIMCH1-214ENST00000512228 IBTKQ9P2D0 1353 aaPredicted RBP14.61□□□□□ -0.07
LIMCH1-214ENST00000512228 ELL2O00472 640 aaPredicted RBP14.61□□□□□ -0.07
LIMCH1-214ENST00000512228 DUSP27Q5VZP5 1158 aa14.61□□□□□ -0.07
LIMCH1-214ENST00000512228 PPP1R42Q7Z4L9 355 aa14.61□□□□□ -0.07
LIMCH1-214ENST00000512228 RPGRQ92834 1020 aaKnown RBP14.61□□□□□ -0.07
LIMCH1-214ENST00000512228 CFAP44Q96MT7 982 aa14.61□□□□□ -0.07
LIMCH1-214ENST00000512228 TAF1DQ9H5J8 278 aaPredicted RBP14.61□□□□□ -0.07
LIMCH1-214ENST00000512228 COL4A1P02462 1669 aa14.61□□□□□ -0.07
LIMCH1-214ENST00000512228 PARP10Q53GL7 1025 aa14.6□□□□□ -0.07
LIMCH1-214ENST00000512228 JMYQ8N9B5 988 aa14.6□□□□□ -0.07
LIMCH1-214ENST00000512228 RBM17Q96I25 401 aaKnown RBP14.6□□□□□ -0.07
LIMCH1-214ENST00000512228 L3MBTL3Q96JM7 780 aaPredicted RBP14.6□□□□□ -0.07
LIMCH1-214ENST00000512228 RIC1Q4ADV7 1423 aa14.59□□□□□ -0.07
LIMCH1-214ENST00000512228 ATP5J2-PTCD1G3V325 749 aa14.59□□□□□ -0.07
LIMCH1-214ENST00000512228 C8orf58Q8NAV2 365 aa14.59□□□□□ -0.07
LIMCH1-214ENST00000512228 NLRP3Q96P20 1036 aa14.59□□□□□ -0.07
LIMCH1-214ENST00000512228 PSMD1Q99460 953 aa14.59□□□□□ -0.07
LIMCH1-214ENST00000512228 ABCC4O15439 1325 aa14.59□□□□□ -0.07
LIMCH1-214ENST00000512228 SCN4AP35499 1836 aa14.59□□□□□ -0.07
LIMCH1-214ENST00000512228 LTBP1Q14766 1721 aa14.58□□□□□ -0.07
LIMCH1-214ENST00000512228 PPEF1O14829 653 aaPredicted RBP14.58□□□□□ -0.08
LIMCH1-214ENST00000512228 ITGBL1O95965 494 aaPredicted RBP14.58□□□□□ -0.08
LIMCH1-214ENST00000512228 HDGFL1Q5TGJ6 251 aa14.58□□□□□ -0.08
LIMCH1-214ENST00000512228 CHADLQ6NUI6 762 aa14.58□□□□□ -0.08
LIMCH1-214ENST00000512228 ANKRD13DQ6ZTN6 518 aa14.58□□□□□ -0.08
LIMCH1-214ENST00000512228 ISCA1Q9BUE6 129 aa14.58□□□□□ -0.08
LIMCH1-214ENST00000512228 PHAXQ9H814 394 aaKnown RBP14.58□□□□□ -0.08
LIMCH1-214ENST00000512228 RNF123Q5XPI4 1314 aa14.58□□□□□ -0.08
LIMCH1-214ENST00000512228 IFFO2Q5TF58 517 aa14.57□□□□□ -0.08
LIMCH1-214ENST00000512228 TSPYL6Q8N831 410 aa14.57□□□□□ -0.08
LIMCH1-214ENST00000512228 PLBD2Q8NHP8 589 aa14.57□□□□□ -0.08
LIMCH1-214ENST00000512228 FAM89AQ96GI7 184 aa14.57□□□□□ -0.08
LIMCH1-214ENST00000512228 TRMT112Q9UI30 125 aaKnown RBP14.57□□□□□ -0.08
LIMCH1-214ENST00000512228 ATP6V0A2Q9Y487 856 aa14.57□□□□□ -0.08
LIMCH1-214ENST00000512228 DDX60Q8IY21 1712 aaKnown RBP14.57□□□□□ -0.08
LIMCH1-214ENST00000512228 RTL5Q5HYW3 569 aaPredicted RBP14.56□□□□□ -0.08
LIMCH1-214ENST00000512228 CC2D2BQ6DHV5 1058 aa14.56□□□□□ -0.08
LIMCH1-214ENST00000512228 JARID2Q92833 1246 aaPredicted RBP14.56□□□□□ -0.08
LIMCH1-214ENST00000512228 ADAMTSL1Q8N6G6 1762 aa14.55□□□□□ -0.08
LIMCH1-214ENST00000512228 EPHX2P34913 555 aa14.55□□□□□ -0.08
LIMCH1-214ENST00000512228 FMR1Q06787 632 aaKnown RBP eCLIP14.55□□□□□ -0.08
LIMCH1-214ENST00000512228 EAPPQ56P03 285 aaPredicted RBP14.55□□□□□ -0.08
LIMCH1-214ENST00000512228 DBF4Q9UBU7 674 aaPredicted RBP14.55□□□□□ -0.08
LIMCH1-214ENST00000512228 GJA3Q9Y6H8 435 aa14.55□□□□□ -0.08
LIMCH1-214ENST00000512228 PASKQ96RG2 1323 aa14.55□□□□□ -0.08
LIMCH1-214ENST00000512228 HOXB7P09629 217 aa14.54□□□□□ -0.08
LIMCH1-214ENST00000512228 EPS15P42566 896 aa14.54□□□□□ -0.08
LIMCH1-214ENST00000512228 AOC3Q16853 763 aa14.54□□□□□ -0.08
LIMCH1-214ENST00000512228 HSP90AB3PQ58FF7 597 aa14.54□□□□□ -0.08
LIMCH1-214ENST00000512228 SP8Q8IXZ3 490 aa14.54□□□□□ -0.08
LIMCH1-214ENST00000512228 GPC2Q8N158 579 aa14.54□□□□□ -0.08
LIMCH1-214ENST00000512228 LARGE2Q8N3Y3 721 aa14.54□□□□□ -0.08
LIMCH1-214ENST00000512228 IFT57Q9NWB7 429 aa14.54□□□□□ -0.08
LIMCH1-214ENST00000512228 HACL1Q9UJ83 578 aa14.54□□□□□ -0.08
LIMCH1-214ENST00000512228 SH3TC1Q8TE82 1336 aa14.54□□□□□ -0.08
LIMCH1-214ENST00000512228 BBOX1O75936 387 aa14.53□□□□□ -0.08
LIMCH1-214ENST00000512228 SCNN1DP51172 638 aa14.53□□□□□ -0.08
LIMCH1-214ENST00000512228 COL13A1Q5TAT6 717 aaPredicted RBP14.53□□□□□ -0.08
LIMCH1-214ENST00000512228 MAP1SQ66K74 1059 aaPredicted RBP14.53□□□□□ -0.08
LIMCH1-214ENST00000512228 LDHDQ86WU2 507 aa14.53□□□□□ -0.08
LIMCH1-214ENST00000512228 JDP2Q8WYK2 163 aa14.53□□□□□ -0.08
LIMCH1-214ENST00000512228 CELF1Q92879 486 aaKnown RBP14.53□□□□□ -0.08
LIMCH1-214ENST00000512228 RTFDC1Q9BY42 306 aaPredicted RBP14.53□□□□□ -0.08
LIMCH1-214ENST00000512228 HYPKQ9NX55 129 aa14.53□□□□□ -0.08
LIMCH1-214ENST00000512228 IQCA1LA6NCM1 817 aa14.52□□□□□ -0.09
LIMCH1-214ENST00000512228 CXCL9Q07325 125 aa14.52□□□□□ -0.09
LIMCH1-214ENST00000512228 TSR2Q969E8 191 aaKnown RBP14.52□□□□□ -0.09
LIMCH1-214ENST00000512228 MKRN1Q9UHC7 482 aaKnown RBP14.52□□□□□ -0.09
LIMCH1-214ENST00000512228 CLEC11AQ9Y240 323 aa14.52□□□□□ -0.09
LIMCH1-214ENST00000512228 PPIP5K2O43314 1243 aa14.51□□□□□ -0.09
LIMCH1-214ENST00000512228 EIF6P56537 245 aaKnown RBP14.51□□□□□ -0.09
LIMCH1-214ENST00000512228 GNAI1P63096 354 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms