RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 DIP2CQ9Y2E4 1556 aa4.13□□□□□ -1.75
USP53-205ENST00000509769 HSF2BPO75031 334 aa4.13□□□□□ -1.75
USP53-205ENST00000509769 ATP5DP30049 168 aa4.13□□□□□ -1.75
USP53-205ENST00000509769 CASQ1P31415 396 aa4.13□□□□□ -1.75
USP53-205ENST00000509769 SPECC1Q5M775 1068 aa4.13□□□□□ -1.75
USP53-205ENST00000509769 NOL8Q76FK4 1167 aaKnown RBP4.13□□□□□ -1.75
USP53-205ENST00000509769 DDX19BQ9UMR2 479 aa4.13□□□□□ -1.75
USP53-205ENST00000509769 RALGAPBQ86X10 1494 aa4.13□□□□□ -1.75
USP53-205ENST00000509769 SHPRHQ149N8 1683 aa4.13□□□□□ -1.75
USP53-205ENST00000509769 FAM83GA6ND36 823 aa4.13□□□□□ -1.75
USP53-205ENST00000509769 ERC2O15083 957 aa4.13□□□□□ -1.75
USP53-205ENST00000509769 CREB3O43889 395 aa4.13□□□□□ -1.75
USP53-205ENST00000509769 PAFAH1B1P43034 410 aa4.13□□□□□ -1.75
USP53-205ENST00000509769 NAA25Q14CX7 972 aa4.13□□□□□ -1.75
USP53-205ENST00000509769 IFI16Q16666 785 aaKnown RBP4.13□□□□□ -1.75
USP53-205ENST00000509769 GDAP1L1Q96MZ0 367 aa4.13□□□□□ -1.75
USP53-205ENST00000509769 PYM1Q9BRP8 204 aaKnown RBP4.13□□□□□ -1.75
USP53-205ENST00000509769 VEZTQ9HBM0 779 aa4.13□□□□□ -1.75
USP53-205ENST00000509769 DHX16O60231 1041 aaKnown RBP4.12□□□□□ -1.75
USP53-205ENST00000509769 MGEA5O60502 916 aa4.12□□□□□ -1.75
USP53-205ENST00000509769 RRP1P56182 461 aaKnown RBP4.12□□□□□ -1.75
USP53-205ENST00000509769 CBX1P83916 185 aa4.12□□□□□ -1.75
USP53-205ENST00000509769 CLUL1Q15846 466 aa4.12□□□□□ -1.75
USP53-205ENST00000509769 TRIM60Q495X7 471 aa4.12□□□□□ -1.75
USP53-205ENST00000509769 CCDC144CPQ8IYA2 1237 aa4.12□□□□□ -1.75
USP53-205ENST00000509769 FAM76AQ8TAV0 307 aa4.12□□□□□ -1.75
USP53-205ENST00000509769 NCAPGQ9BPX3 1015 aa4.12□□□□□ -1.75
USP53-205ENST00000509769 ALDH3A1P30838 453 aa4.12□□□□□ -1.75
USP53-205ENST00000509769 RASSF2P50749 326 aa4.12□□□□□ -1.75
USP53-205ENST00000509769 ZNF131P52739 623 aa4.12□□□□□ -1.75
USP53-205ENST00000509769 PPFIA1Q13136 1202 aa4.12□□□□□ -1.75
USP53-205ENST00000509769 NEDD9Q14511 834 aa4.12□□□□□ -1.75
USP53-205ENST00000509769 ERCC6LQ2NKX8 1250 aa4.12□□□□□ -1.75
USP53-205ENST00000509769 NLRP13Q86W25 1043 aa4.12□□□□□ -1.75
USP53-205ENST00000509769 PLCD3Q8N3E9 789 aa4.12□□□□□ -1.75
USP53-205ENST00000509769 CCDC155Q8N6L0 562 aa4.12□□□□□ -1.75
USP53-205ENST00000509769 ZSCAN31Q96LW9 406 aaPredicted RBP4.12□□□□□ -1.75
USP53-205ENST00000509769 NAP1L4Q99733 375 aaKnown RBP4.12□□□□□ -1.75
USP53-205ENST00000509769 PPP1R12CQ9BZL4 782 aa4.12□□□□□ -1.75
USP53-205ENST00000509769 IQCGQ9H095 443 aaKnown RBP4.12□□□□□ -1.75
USP53-205ENST00000509769 SPON1Q9HCB6 807 aa4.12□□□□□ -1.75
USP53-205ENST00000509769 UGGT1Q9NYU2 1555 aa4.12□□□□□ -1.75
USP53-205ENST00000509769 MYO5CQ9NQX4 1742 aa4.12□□□□□ -1.75
USP53-205ENST00000509769 CAMSAP2Q08AD1 1489 aa4.12□□□□□ -1.75
USP53-205ENST00000509769 ADGRB2O60241 1585 aa4.12□□□□□ -1.75
USP53-205ENST00000509769 SATB1Q01826 763 aa4.12□□□□□ -1.75
USP53-205ENST00000509769 CCDC57Q2TAC2 916 aa4.12□□□□□ -1.75
USP53-205ENST00000509769 CFAP58Q5T655 872 aa4.12□□□□□ -1.75
USP53-205ENST00000509769 MICALL1Q8N3F8 863 aa4.12□□□□□ -1.75
USP53-205ENST00000509769 ZC3H15Q8WU90 426 aaKnown RBP4.12□□□□□ -1.75
USP53-205ENST00000509769 SPDL1Q96EA4 605 aa4.12□□□□□ -1.75
USP53-205ENST00000509769 RAB3IPQ96QF0 476 aaPredicted RBP4.12□□□□□ -1.75
USP53-205ENST00000509769 GIMAP4Q9NUV9 329 aa4.12□□□□□ -1.75
USP53-205ENST00000509769 CWC25Q9NXE8 425 aaPredicted RBP4.12□□□□□ -1.75
USP53-205ENST00000509769 SEPT10Q9P0V9 454 aa4.12□□□□□ -1.75
USP53-205ENST00000509769 USP25Q9UHP3 1055 aa4.12□□□□□ -1.75
USP53-205ENST00000509769 GCKP35557 465 aa4.12□□□□□ -1.75
USP53-205ENST00000509769 LMAN1P49257 510 aa4.12□□□□□ -1.75
USP53-205ENST00000509769 NOP14P78316 857 aaKnown RBP4.12□□□□□ -1.75
USP53-205ENST00000509769 SNW1Q13573 536 aaKnown RBP4.12□□□□□ -1.75
USP53-205ENST00000509769 TNIP1Q15025 636 aa4.12□□□□□ -1.75
USP53-205ENST00000509769 CEP57Q86XR8 500 aa4.12□□□□□ -1.75
USP53-205ENST00000509769 SMC1BQ8NDV3 1235 aa4.12□□□□□ -1.75
USP53-205ENST00000509769 TRIM4Q9C037 500 aa4.12□□□□□ -1.75
USP53-205ENST00000509769 RGS12O14924 1447 aa4.12□□□□□ -1.75
USP53-205ENST00000509769 ABCC1P33527 1531 aa4.12□□□□□ -1.75
USP53-205ENST00000509769 DNMT1P26358 1616 aaKnown RBP4.12□□□□□ -1.75
USP53-205ENST00000509769 CDC45O75419 566 aa4.11□□□□□ -1.75
USP53-205ENST00000509769 CIB2O75838 187 aa4.11□□□□□ -1.75
USP53-205ENST00000509769 FERP16591 822 aa4.11□□□□□ -1.75
USP53-205ENST00000509769 MCM4P33991 863 aa4.11□□□□□ -1.75
USP53-205ENST00000509769 PRPHP41219 470 aa4.11□□□□□ -1.75
USP53-205ENST00000509769 SETDB1Q15047 1291 aa4.11□□□□□ -1.75
USP53-205ENST00000509769 PHLDB3Q6NSJ2 640 aa4.11□□□□□ -1.75
USP53-205ENST00000509769 TNS4Q8IZW8 715 aa4.11□□□□□ -1.75
USP53-205ENST00000509769 CNPY4Q8N129 248 aa4.11□□□□□ -1.75
USP53-205ENST00000509769 CNKSR2Q8WXI2 1034 aa4.11□□□□□ -1.75
USP53-205ENST00000509769 C22orf23Q9BZE7 217 aa4.11□□□□□ -1.75
USP53-205ENST00000509769 BRPF3Q9ULD4 1205 aa4.11□□□□□ -1.75
USP53-205ENST00000509769 LRRD1A4D1F6 860 aa4.11□□□□□ -1.75
USP53-205ENST00000509769 EPB41L2O43491 1005 aaKnown RBP4.11□□□□□ -1.75
USP53-205ENST00000509769 PPFIA4O75335 1185 aa4.11□□□□□ -1.75
USP53-205ENST00000509769 FGFR1OPO95684 399 aaKnown RBP4.11□□□□□ -1.75
USP53-205ENST00000509769 ENAHQ8N8S7 591 aaPredicted RBP4.11□□□□□ -1.75
USP53-205ENST00000509769 GBP5Q96PP8 586 aa4.11□□□□□ -1.75
USP53-205ENST00000509769 ALS2CR12Q96Q35 445 aa4.11□□□□□ -1.75
USP53-205ENST00000509769 CCDC77Q9BR77 488 aa4.11□□□□□ -1.75
USP53-205ENST00000509769 UTP14AQ9BVJ6 771 aaKnown RBP4.11□□□□□ -1.75
USP53-205ENST00000509769 SCAF11Q99590 1463 aaKnown RBP4.11□□□□□ -1.75
USP53-205ENST00000509769 TRIM21P19474 475 aaKnown RBP4.11□□□□□ -1.75
USP53-205ENST00000509769 SFPQP23246 707 aaKnown RBP eCLIP4.11□□□□□ -1.75
USP53-205ENST00000509769 APLP1P51693 650 aa4.11□□□□□ -1.75
USP53-205ENST00000509769 CCDC129Q6ZRS4 1044 aa4.11□□□□□ -1.75
USP53-205ENST00000509769 EFCAB13Q8IY85 973 aa4.11□□□□□ -1.75
USP53-205ENST00000509769 PRPF38AQ8NAV1 312 aaKnown RBP4.11□□□□□ -1.75
USP53-205ENST00000509769 HVCN1Q96D96 273 aa4.11□□□□□ -1.75
USP53-205ENST00000509769 TROVE2P10155 538 aaKnown RBP eCLIP4.11□□□□□ -1.75
USP53-205ENST00000509769 ARHGAP29Q52LW3 1261 aa4.11□□□□□ -1.75
USP53-205ENST00000509769 MCTP1Q6DN14 999 aa4.11□□□□□ -1.75
USP53-205ENST00000509769 TSG101Q99816 390 aa4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms