RNA–Protein interactions for RNA: ENST00000508319.1

HMGCS1-205, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 3

Gene HMGCS1, Length 591 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-205ENST00000508319 ZNF277Q9NRM2 450 aaPredicted RBP17.02■□□□□ 0.32
HMGCS1-205ENST00000508319 SCN4AP35499 1836 aa17.02■□□□□ 0.31
HMGCS1-205ENST00000508319 DDNO94850 711 aaPredicted RBP17.01■□□□□ 0.31
HMGCS1-205ENST00000508319 HOXA10P31260 410 aaPredicted RBP17.01■□□□□ 0.31
HMGCS1-205ENST00000508319 PARP10Q53GL7 1025 aa17.01■□□□□ 0.31
HMGCS1-205ENST00000508319 C3orf67Q6ZVT6 689 aa17.01■□□□□ 0.31
HMGCS1-205ENST00000508319 RTKN2Q8IZC4 609 aa17.01■□□□□ 0.31
HMGCS1-205ENST00000508319 NECTIN2Q92692 538 aa17.01■□□□□ 0.31
HMGCS1-205ENST00000508319 COL4A5P29400 1685 aa17.01■□□□□ 0.31
HMGCS1-205ENST00000508319 PPP1R42Q7Z4L9 355 aa17■□□□□ 0.31
HMGCS1-205ENST00000508319 XAGE3Q8WTP9 111 aa17■□□□□ 0.31
HMGCS1-205ENST00000508319 RPGRQ92834 1020 aaKnown RBP17■□□□□ 0.31
HMGCS1-205ENST00000508319 LAS1LQ9Y4W2 734 aaKnown RBP17■□□□□ 0.31
HMGCS1-205ENST00000508319 ZNF541Q9H0D2 1346 aa16.99■□□□□ 0.31
HMGCS1-205ENST00000508319 COPS6Q7L5N1 327 aa16.99■□□□□ 0.31
HMGCS1-205ENST00000508319 SLC51AQ86UW1 340 aa16.99■□□□□ 0.31
HMGCS1-205ENST00000508319 L3MBTL3Q96JM7 780 aaPredicted RBP16.99■□□□□ 0.31
HMGCS1-205ENST00000508319 DDX21Q9NR30 783 aaKnown RBP eCLIP16.99■□□□□ 0.31
HMGCS1-205ENST00000508319 CHPF2Q9P2E5 772 aa16.99■□□□□ 0.31
HMGCS1-205ENST00000508319 HOXB7P09629 217 aa16.98■□□□□ 0.31
HMGCS1-205ENST00000508319 IARSP41252 1262 aaKnown RBP16.98■□□□□ 0.31
HMGCS1-205ENST00000508319 KLRG1Q96E93 195 aa16.98■□□□□ 0.31
HMGCS1-205ENST00000508319 CFAP44Q96MT7 982 aa16.98■□□□□ 0.31
HMGCS1-205ENST00000508319 PSMD1Q99460 953 aa16.98■□□□□ 0.31
HMGCS1-205ENST00000508319 UTP14AQ9BVJ6 771 aaKnown RBP16.98■□□□□ 0.31
HMGCS1-205ENST00000508319 RNF123Q5XPI4 1314 aa16.97■□□□□ 0.31
HMGCS1-205ENST00000508319 DDX60Q8IY21 1712 aaKnown RBP16.97■□□□□ 0.31
HMGCS1-205ENST00000508319 POTEIP0CG38 1075 aa16.97■□□□□ 0.31
HMGCS1-205ENST00000508319 POTEJP0CG39 1038 aa16.97■□□□□ 0.31
HMGCS1-205ENST00000508319 AIMP1Q12904 312 aaKnown RBP16.97■□□□□ 0.31
HMGCS1-205ENST00000508319 HSP90AB3PQ58FF7 597 aa16.97■□□□□ 0.31
HMGCS1-205ENST00000508319 CC2D2BQ6DHV5 1058 aa16.97■□□□□ 0.31
HMGCS1-205ENST00000508319 SYNE4Q8N205 404 aa16.97■□□□□ 0.31
HMGCS1-205ENST00000508319 RBM17Q96I25 401 aaKnown RBP16.97■□□□□ 0.31
HMGCS1-205ENST00000508319 CRAMP1Q96RY5 1269 aa16.97■□□□□ 0.31
HMGCS1-205ENST00000508319 ADAMTSL1Q8N6G6 1762 aa16.97■□□□□ 0.31
HMGCS1-205ENST00000508319 PPEF1O14829 653 aaPredicted RBP16.96■□□□□ 0.31
HMGCS1-205ENST00000508319 SLC10A5Q5PT55 438 aa16.96■□□□□ 0.31
HMGCS1-205ENST00000508319 HDGFL1Q5TGJ6 251 aa16.96■□□□□ 0.31
HMGCS1-205ENST00000508319 NLRP10Q86W26 655 aa16.96■□□□□ 0.31
HMGCS1-205ENST00000508319 MBIPQ9NS73 344 aa16.96■□□□□ 0.31
HMGCS1-205ENST00000508319 IQCA1LA6NCM1 817 aa16.95■□□□□ 0.3
HMGCS1-205ENST00000508319 FZD9O00144 591 aa16.95■□□□□ 0.3
HMGCS1-205ENST00000508319 APAF1O14727 1248 aa16.95■□□□□ 0.3
HMGCS1-205ENST00000508319 ZNF853P0CG23 659 aa16.95■□□□□ 0.3
HMGCS1-205ENST00000508319 TCIRG1Q13488 830 aa16.95■□□□□ 0.3
HMGCS1-205ENST00000508319 JMYQ8N9B5 988 aa16.95■□□□□ 0.3
HMGCS1-205ENST00000508319 NLRP3Q96P20 1036 aa16.95■□□□□ 0.3
HMGCS1-205ENST00000508319 ABCC4O15439 1325 aa16.95■□□□□ 0.3
HMGCS1-205ENST00000508319 CHADLQ6NUI6 762 aa16.94■□□□□ 0.3
HMGCS1-205ENST00000508319 TAF1P21675 1872 aa16.93■□□□□ 0.3
HMGCS1-205ENST00000508319 GRIPAP1Q4V328 841 aa16.93■□□□□ 0.3
HMGCS1-205ENST00000508319 DUSP27Q5VZP5 1158 aa16.93■□□□□ 0.3
HMGCS1-205ENST00000508319 TAF1DQ9H5J8 278 aaPredicted RBP16.93■□□□□ 0.3
HMGCS1-205ENST00000508319 DBF4Q9UBU7 674 aaPredicted RBP16.93■□□□□ 0.3
HMGCS1-205ENST00000508319 SH3TC1Q8TE82 1336 aa16.93■□□□□ 0.3
HMGCS1-205ENST00000508319 LRRC37AA6NMS7 1700 aa16.93■□□□□ 0.3
HMGCS1-205ENST00000508319 LTBP1Q14766 1721 aa16.93■□□□□ 0.3
HMGCS1-205ENST00000508319 TCERG1O14776 1098 aaKnown RBP16.92■□□□□ 0.3
HMGCS1-205ENST00000508319 HCLS1P14317 486 aaPredicted RBP16.92■□□□□ 0.3
HMGCS1-205ENST00000508319 PLBD2Q8NHP8 589 aa16.92■□□□□ 0.3
HMGCS1-205ENST00000508319 IFT57Q9NWB7 429 aa16.92■□□□□ 0.3
HMGCS1-205ENST00000508319 TRMT112Q9UI30 125 aaKnown RBP16.92■□□□□ 0.3
HMGCS1-205ENST00000508319 LDHDQ86WU2 507 aa16.91■□□□□ 0.3
HMGCS1-205ENST00000508319 GPC2Q8N158 579 aa16.91■□□□□ 0.3
HMGCS1-205ENST00000508319 JDP2Q8WYK2 163 aa16.91■□□□□ 0.3
HMGCS1-205ENST00000508319 ATP6V0A2Q9Y487 856 aa16.91■□□□□ 0.3
HMGCS1-205ENST00000508319 ANKRD13DQ6ZTN6 518 aa16.9■□□□□ 0.3
HMGCS1-205ENST00000508319 ISCA1Q9BUE6 129 aa16.9■□□□□ 0.3
HMGCS1-205ENST00000508319 HYPKQ9NX55 129 aa16.9■□□□□ 0.3
HMGCS1-205ENST00000508319 HACL1Q9UJ83 578 aa16.9■□□□□ 0.3
HMGCS1-205ENST00000508319 DUOX1Q9NRD9 1551 aa16.89■□□□□ 0.3
HMGCS1-205ENST00000508319 COL4A1P02462 1669 aa16.89■□□□□ 0.29
HMGCS1-205ENST00000508319 EPHX2P34913 555 aa16.89■□□□□ 0.29
HMGCS1-205ENST00000508319 GNAI1P63096 354 aa16.89■□□□□ 0.29
HMGCS1-205ENST00000508319 CALD1Q05682 793 aaKnown RBP16.89■□□□□ 0.29
HMGCS1-205ENST00000508319 CCDC184Q52MB2 194 aa16.89■□□□□ 0.29
HMGCS1-205ENST00000508319 LARGE2Q8N3Y3 721 aa16.89■□□□□ 0.29
HMGCS1-205ENST00000508319 ZNF428Q96B54 188 aa16.89■□□□□ 0.29
HMGCS1-205ENST00000508319 PASKQ96RG2 1323 aa16.89■□□□□ 0.29
HMGCS1-205ENST00000508319 IFFO2Q5TF58 517 aa16.88■□□□□ 0.29
HMGCS1-205ENST00000508319 ATP5J2-PTCD1G3V325 749 aa16.87■□□□□ 0.29
HMGCS1-205ENST00000508319 PPIP5K2O43314 1243 aa16.87■□□□□ 0.29
HMGCS1-205ENST00000508319 EIF6P56537 245 aaKnown RBP16.87■□□□□ 0.29
HMGCS1-205ENST00000508319 GRAPQ13588 217 aa16.87■□□□□ 0.29
HMGCS1-205ENST00000508319 EAPPQ56P03 285 aaPredicted RBP16.87■□□□□ 0.29
HMGCS1-205ENST00000508319 GRAPLQ8TC17 118 aaPredicted RBP16.87■□□□□ 0.29
HMGCS1-205ENST00000508319 RTFDC1Q9BY42 306 aaPredicted RBP16.87■□□□□ 0.29
HMGCS1-205ENST00000508319 CREBZFQ9NS37 354 aa16.87■□□□□ 0.29
HMGCS1-205ENST00000508319 BBOX1O75936 387 aa16.86■□□□□ 0.29
HMGCS1-205ENST00000508319 SCNN1DP51172 638 aa16.86■□□□□ 0.29
HMGCS1-205ENST00000508319 AOC3Q16853 763 aa16.86■□□□□ 0.29
HMGCS1-205ENST00000508319 DDX46Q7L014 1031 aaKnown RBP16.86■□□□□ 0.29
HMGCS1-205ENST00000508319 SP8Q8IXZ3 490 aa16.86■□□□□ 0.29
HMGCS1-205ENST00000508319 FAM89AQ96GI7 184 aa16.86■□□□□ 0.29
HMGCS1-205ENST00000508319 TMX4Q9H1E5 349 aaPredicted RBP16.86■□□□□ 0.29
HMGCS1-205ENST00000508319 GJA3Q9Y6H8 435 aa16.86■□□□□ 0.29
HMGCS1-205ENST00000508319 ELL2O00472 640 aaPredicted RBP16.85■□□□□ 0.29
HMGCS1-205ENST00000508319 ITGBL1O95965 494 aaPredicted RBP16.85■□□□□ 0.29
HMGCS1-205ENST00000508319 TRIM28Q13263 835 aaKnown RBP16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms