RNA–Protein interactions for RNA: ENST00000507906.5

USP53-204, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 4

Gene USP53, Length 546 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-204ENST00000507906 TMEM87AQ8NBN3 555 aa6.43□□□□□ -1.38
USP53-204ENST00000507906 RHPN1Q8TCX5 695 aa6.43□□□□□ -1.38
USP53-204ENST00000507906 POLMQ9NP87 494 aaPredicted RBP6.43□□□□□ -1.38
USP53-204ENST00000507906 FOXD3Q9UJU5 478 aaPredicted RBP6.43□□□□□ -1.38
USP53-204ENST00000507906 TGFBR3LH3BV60 316 aa6.42□□□□□ -1.38
USP53-204ENST00000507906 SORBS3O60504 671 aa6.42□□□□□ -1.38
USP53-204ENST00000507906 BMP1P13497 986 aa6.42□□□□□ -1.38
USP53-204ENST00000507906 ERCC5P28715 1186 aaPredicted RBP6.42□□□□□ -1.38
USP53-204ENST00000507906 IRS1P35568 1242 aa6.42□□□□□ -1.38
USP53-204ENST00000507906 USP5P45974 858 aa6.42□□□□□ -1.38
USP53-204ENST00000507906 FANCCQ00597 558 aa6.42□□□□□ -1.38
USP53-204ENST00000507906 CTC1Q2NKJ3 1217 aa6.42□□□□□ -1.38
USP53-204ENST00000507906 NAALADL2Q58DX5 795 aa6.42□□□□□ -1.38
USP53-204ENST00000507906 NBPF10Q6P3W6 841 aaKnown RBP6.42□□□□□ -1.38
USP53-204ENST00000507906 NT5DC4Q86YG4 428 aa6.42□□□□□ -1.38
USP53-204ENST00000507906 LINC00528Q8N1L1 170 aa6.42□□□□□ -1.38
USP53-204ENST00000507906 RNF217Q8TC41 542 aa6.42□□□□□ -1.38
USP53-204ENST00000507906 ZIC5Q96T25 663 aa6.42□□□□□ -1.38
USP53-204ENST00000507906 TSEN34Q9BSV6 310 aaKnown RBP6.42□□□□□ -1.38
USP53-204ENST00000507906 VTI1BQ9UEU0 232 aa6.42□□□□□ -1.38
USP53-204ENST00000507906 KCNMB2Q9Y691 235 aa6.42□□□□□ -1.38
USP53-204ENST00000507906 RHOQP17081 205 aa6.41□□□□□ -1.38
USP53-204ENST00000507906 IDH3AP50213 366 aa6.41□□□□□ -1.38
USP53-204ENST00000507906 ZC3H6P61129 1189 aaKnown RBP6.41□□□□□ -1.38
USP53-204ENST00000507906 LCE2CQ5TA81 110 aa6.41□□□□□ -1.38
USP53-204ENST00000507906 LRRC69Q6ZNQ3 347 aa6.41□□□□□ -1.38
USP53-204ENST00000507906 EPS8L3Q8TE67 593 aaKnown RBP6.41□□□□□ -1.38
USP53-204ENST00000507906 ZDHHC3Q9NYG2 299 aa6.41□□□□□ -1.38
USP53-204ENST00000507906 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.41□□□□□ -1.38
USP53-204ENST00000507906 CAPN5O15484 640 aaPredicted RBP6.4□□□□□ -1.38
USP53-204ENST00000507906 TNFRSF21O75509 655 aa6.4□□□□□ -1.38
USP53-204ENST00000507906 MSX1P28360 303 aa6.4□□□□□ -1.38
USP53-204ENST00000507906 GNA15P30679 374 aa6.4□□□□□ -1.38
USP53-204ENST00000507906 ATP2B2Q01814 1243 aa6.4□□□□□ -1.38
USP53-204ENST00000507906 NFX1Q12986 1120 aaKnown RBP6.4□□□□□ -1.38
USP53-204ENST00000507906 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.4□□□□□ -1.38
USP53-204ENST00000507906 C6orf118Q5T5N4 469 aa6.4□□□□□ -1.38
USP53-204ENST00000507906 ALG1LQ6GMV1 187 aa6.4□□□□□ -1.38
USP53-204ENST00000507906 PIK3R5Q8WYR1 880 aa6.4□□□□□ -1.38
USP53-204ENST00000507906 OSBPL7Q9BZF2 842 aa6.4□□□□□ -1.38
USP53-204ENST00000507906 MRS2Q9HD23 443 aa6.4□□□□□ -1.38
USP53-204ENST00000507906 SMCPP49901 116 aaPredicted RBP6.39□□□□□ -1.39
USP53-204ENST00000507906 NBPF1Q3BBV0 1214 aa6.39□□□□□ -1.39
USP53-204ENST00000507906 BTLAQ7Z6A9 289 aa6.39□□□□□ -1.39
USP53-204ENST00000507906 TMEM63CQ9P1W3 806 aa6.39□□□□□ -1.39
USP53-204ENST00000507906 RTCBQ9Y3I0 505 aaKnown RBP6.39□□□□□ -1.39
USP53-204ENST00000507906 AK5Q9Y6K8 562 aa6.39□□□□□ -1.39
USP53-204ENST00000507906 POLR3DP05423 398 aaPredicted RBP6.38□□□□□ -1.39
USP53-204ENST00000507906 BMP2P12643 396 aa6.38□□□□□ -1.39
USP53-204ENST00000507906 GTF2E1P29083 439 aaPredicted RBP6.38□□□□□ -1.39
USP53-204ENST00000507906 VEGFBP49765 207 aa6.38□□□□□ -1.39
USP53-204ENST00000507906 IER5Q5VY09 327 aa6.38□□□□□ -1.39
USP53-204ENST00000507906 XKR5Q6UX68 686 aa6.38□□□□□ -1.39
USP53-204ENST00000507906 CMTR1Q8N1G2 835 aaKnown RBP6.38□□□□□ -1.39
USP53-204ENST00000507906 SREK1Q8WXA9 508 aaKnown RBP6.38□□□□□ -1.39
USP53-204ENST00000507906 CCDC74AQ96AQ1 378 aa6.38□□□□□ -1.39
USP53-204ENST00000507906 CHRDQ9H2X0 955 aa6.38□□□□□ -1.39
USP53-204ENST00000507906 ZFYVE28Q9HCC9 887 aa6.38□□□□□ -1.39
USP53-204ENST00000507906 CNTN3Q9P232 1028 aa6.38□□□□□ -1.39
USP53-204ENST00000507906 FIGNL2A6NMB9 653 aa6.37□□□□□ -1.39
USP53-204ENST00000507906 PCSK2P16519 638 aa6.37□□□□□ -1.39
USP53-204ENST00000507906 TNNI2P48788 182 aa6.37□□□□□ -1.39
USP53-204ENST00000507906 BICDL1Q6ZP65 573 aa6.37□□□□□ -1.39
USP53-204ENST00000507906 FBF1Q8TES7 1133 aa6.37□□□□□ -1.39
USP53-204ENST00000507906 TRIM47Q96LD4 638 aa6.37□□□□□ -1.39
USP53-204ENST00000507906 DRC1Q96MC2 740 aa6.37□□□□□ -1.39
USP53-204ENST00000507906 DNAJC25Q9H1X3 360 aa6.37□□□□□ -1.39
USP53-204ENST00000507906 ACBD3Q9H3P7 528 aa6.37□□□□□ -1.39
USP53-204ENST00000507906 A0A1W2PNR3 127 aa6.36□□□□□ -1.39
USP53-204ENST00000507906 UBAP1LF5GYI3 381 aa6.36□□□□□ -1.39
USP53-204ENST00000507906 CPNE3O75131 537 aaKnown RBP6.36□□□□□ -1.39
USP53-204ENST00000507906 TATP17735 454 aaPredicted RBP6.36□□□□□ -1.39
USP53-204ENST00000507906 ZNF76P36508 570 aa6.36□□□□□ -1.39
USP53-204ENST00000507906 ARSDP51689 593 aa6.36□□□□□ -1.39
USP53-204ENST00000507906 RACK1P63244 317 aaKnown RBP6.36□□□□□ -1.39
USP53-204ENST00000507906 ARSJQ5FYB0 599 aaPredicted RBP6.36□□□□□ -1.39
USP53-204ENST00000507906 MRPL14Q6P1L8 145 aaKnown RBP6.36□□□□□ -1.39
USP53-204ENST00000507906 LYSMD3Q7Z3D4 306 aa6.36□□□□□ -1.39
USP53-204ENST00000507906 TRIM46Q7Z4K8 759 aa6.36□□□□□ -1.39
USP53-204ENST00000507906 RNF34Q969K3 372 aa6.36□□□□□ -1.39
USP53-204ENST00000507906 TINF2Q9BSI4 451 aa6.36□□□□□ -1.39
USP53-204ENST00000507906 ZCCHC2Q9C0B9 1178 aaKnown RBP6.36□□□□□ -1.39
USP53-204ENST00000507906 ELP3Q9H9T3 547 aa6.36□□□□□ -1.39
USP53-204ENST00000507906 TIMMDC1Q9NPL8 285 aa6.36□□□□□ -1.39
USP53-204ENST00000507906 HCN2Q9UL51 889 aa6.36□□□□□ -1.39
USP53-204ENST00000507906 THBS1P07996 1170 aa6.35□□□□□ -1.39
USP53-204ENST00000507906 FGD1P98174 961 aa6.35□□□□□ -1.39
USP53-204ENST00000507906 TYRO3Q06418 890 aa6.35□□□□□ -1.39
USP53-204ENST00000507906 ZNF394Q53GI3 561 aa6.35□□□□□ -1.39
USP53-204ENST00000507906 WDR44Q5JSH3 913 aa6.35□□□□□ -1.39
USP53-204ENST00000507906 MEI1Q5TIA1 1274 aa6.35□□□□□ -1.39
USP53-204ENST00000507906 ZNF438Q7Z4V0 828 aa6.35□□□□□ -1.39
USP53-204ENST00000507906 C1orf127Q8N9H9 656 aa6.35□□□□□ -1.39
USP53-204ENST00000507906 RUBCNLQ9H714 662 aa6.35□□□□□ -1.39
USP53-204ENST00000507906 METTL5Q9NRN9 209 aaKnown RBP6.35□□□□□ -1.39
USP53-204ENST00000507906 PPP1R1BQ9UD71 204 aaPredicted RBP6.35□□□□□ -1.39
USP53-204ENST00000507906 SOS2Q07890 1332 aaPredicted RBP6.34□□□□□ -1.39
USP53-204ENST00000507906 TTLL8A6PVC2 850 aa6.34□□□□□ -1.39
USP53-204ENST00000507906 TERTO14746 1132 aaKnown RBP6.34□□□□□ -1.39
USP53-204ENST00000507906 EREGO14944 169 aa6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms