RNA–Protein interactions for RNA: ENST00000506880.5

PDGFC-205, Transcript of platelet derived growth factor C, humanhuman

TSL 2

Gene PDGFC, Length 1,014 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-205ENST00000506880 NLRP10Q86W26 655 aa10.73□□□□□ -0.69
PDGFC-205ENST00000506880 PI4KAP1Q8N8J0 262 aa10.73□□□□□ -0.69
PDGFC-205ENST00000506880 ZBTB38Q8NAP3 1195 aaPredicted RBP10.73□□□□□ -0.69
PDGFC-205ENST00000506880 CWC25Q9NXE8 425 aaPredicted RBP10.73□□□□□ -0.69
PDGFC-205ENST00000506880 SH3TC1Q8TE82 1336 aa10.73□□□□□ -0.69
PDGFC-205ENST00000506880 ADCY9O60503 1353 aa10.73□□□□□ -0.69
PDGFC-205ENST00000506880 ARFGEF1Q9Y6D6 1849 aa10.72□□□□□ -0.69
PDGFC-205ENST00000506880 AIMP1Q12904 312 aaKnown RBP10.72□□□□□ -0.69
PDGFC-205ENST00000506880 AAMPQ13685 434 aa10.72□□□□□ -0.69
PDGFC-205ENST00000506880 HLFQ16534 295 aa10.72□□□□□ -0.69
PDGFC-205ENST00000506880 SOGA3Q5TF21 947 aa10.72□□□□□ -0.69
PDGFC-205ENST00000506880 PLA2G12BQ9BX93 195 aa10.72□□□□□ -0.69
PDGFC-205ENST00000506880 ZBTB3Q9H5J0 574 aa10.72□□□□□ -0.69
PDGFC-205ENST00000506880 PHAXQ9H814 394 aaKnown RBP10.72□□□□□ -0.69
PDGFC-205ENST00000506880 MAP3K2Q9Y2U5 619 aa10.72□□□□□ -0.69
PDGFC-205ENST00000506880 UTYO14607 1347 aa10.71□□□□□ -0.69
PDGFC-205ENST00000506880 NPHP1O15259 732 aa10.71□□□□□ -0.69
PDGFC-205ENST00000506880 NTSR2O95665 410 aa10.71□□□□□ -0.69
PDGFC-205ENST00000506880 GTF2E1P29083 439 aaPredicted RBP10.71□□□□□ -0.69
PDGFC-205ENST00000506880 DDR1Q08345 913 aa10.71□□□□□ -0.69
PDGFC-205ENST00000506880 CRY2Q49AN0 593 aa10.71□□□□□ -0.69
PDGFC-205ENST00000506880 ZKSCAN2Q63HK3 967 aa10.71□□□□□ -0.69
PDGFC-205ENST00000506880 STYK1Q6J9G0 422 aa10.71□□□□□ -0.69
PDGFC-205ENST00000506880 ATF7IPQ6VMQ6 1270 aa10.71□□□□□ -0.69
PDGFC-205ENST00000506880 SRCAPQ6ZRS2 3230 aa10.71□□□□□ -0.69
PDGFC-205ENST00000506880 ANKRD31Q8N7Z5 1873 aa10.71□□□□□ -0.69
PDGFC-205ENST00000506880 RTL9Q8NET4 1388 aa10.71□□□□□ -0.69
PDGFC-205ENST00000506880 NECTIN2Q92692 538 aa10.71□□□□□ -0.69
PDGFC-205ENST00000506880 PDGFDQ9GZP0 370 aaPredicted RBP10.71□□□□□ -0.69
PDGFC-205ENST00000506880 ATF5Q9Y2D1 282 aaPredicted RBP10.71□□□□□ -0.69
PDGFC-205ENST00000506880 ABCC4O15439 1325 aa10.7□□□□□ -0.7
PDGFC-205ENST00000506880 NEURL1BA8MQ27 555 aa10.7□□□□□ -0.7
PDGFC-205ENST00000506880 ALDH1B1P30837 517 aa10.7□□□□□ -0.7
PDGFC-205ENST00000506880 PDE3AQ14432 1141 aa10.7□□□□□ -0.7
PDGFC-205ENST00000506880 BEND3Q5T5X7 828 aa10.7□□□□□ -0.7
PDGFC-205ENST00000506880 INTS3Q68E01 1043 aaKnown RBP10.7□□□□□ -0.7
PDGFC-205ENST00000506880 CC2D2BQ6DHV5 1058 aa10.7□□□□□ -0.7
PDGFC-205ENST00000506880 PRR5LQ6MZQ0 368 aa10.7□□□□□ -0.7
PDGFC-205ENST00000506880 CNKSR1Q969H4 720 aa10.7□□□□□ -0.7
PDGFC-205ENST00000506880 NLRP3Q96P20 1036 aa10.7□□□□□ -0.7
PDGFC-205ENST00000506880 SRCIN1Q9C0H9 1055 aa10.7□□□□□ -0.7
PDGFC-205ENST00000506880 RCAN3Q9UKA8 241 aa10.7□□□□□ -0.7
PDGFC-205ENST00000506880 KIAA1551Q9HCM1 1747 aa10.7□□□□□ -0.7
PDGFC-205ENST00000506880 UBN2Q6ZU65 1347 aa10.69□□□□□ -0.7
PDGFC-205ENST00000506880 H0YIN7 160 aa10.69□□□□□ -0.7
PDGFC-205ENST00000506880 ANXA1P04083 346 aa10.69□□□□□ -0.7
PDGFC-205ENST00000506880 NPR1P16066 1061 aa10.69□□□□□ -0.7
PDGFC-205ENST00000506880 HOXA10P31260 410 aaPredicted RBP10.69□□□□□ -0.7
PDGFC-205ENST00000506880 PIP4K2AP48426 406 aaPredicted RBP10.69□□□□□ -0.7
PDGFC-205ENST00000506880 GCKRQ14397 625 aa10.69□□□□□ -0.7
PDGFC-205ENST00000506880 SF3B3Q15393 1217 aaKnown RBP10.69□□□□□ -0.7
PDGFC-205ENST00000506880 MASTLQ96GX5 879 aa10.69□□□□□ -0.7
PDGFC-205ENST00000506880 SYT17Q9BSW7 474 aa10.69□□□□□ -0.7
PDGFC-205ENST00000506880 TRMT112Q9UI30 125 aaKnown RBP10.69□□□□□ -0.7
PDGFC-205ENST00000506880 DDX60Q8IY21 1712 aaKnown RBP10.68□□□□□ -0.7
PDGFC-205ENST00000506880 H7C1W4 665 aa10.68□□□□□ -0.7
PDGFC-205ENST00000506880 GRIN3BO60391 1043 aa10.68□□□□□ -0.7
PDGFC-205ENST00000506880 PDE8AO60658 829 aa10.68□□□□□ -0.7
PDGFC-205ENST00000506880 SUSD4Q5VX71 490 aa10.68□□□□□ -0.7
PDGFC-205ENST00000506880 MSL1Q68DK7 614 aa10.68□□□□□ -0.7
PDGFC-205ENST00000506880 CRAMP1Q96RY5 1269 aa10.68□□□□□ -0.7
PDGFC-205ENST00000506880 GRM8O00222 908 aa10.67□□□□□ -0.7
PDGFC-205ENST00000506880 IGKV5-2P06315 115 aa10.67□□□□□ -0.7
PDGFC-205ENST00000506880 GNAI3P08754 354 aa10.67□□□□□ -0.7
PDGFC-205ENST00000506880 SRGNP10124 158 aa10.67□□□□□ -0.7
PDGFC-205ENST00000506880 CCDC152Q4G0S7 254 aa10.67□□□□□ -0.7
PDGFC-205ENST00000506880 G2E3Q7L622 706 aa10.67□□□□□ -0.7
PDGFC-205ENST00000506880 MYD88Q99836 296 aa10.67□□□□□ -0.7
PDGFC-205ENST00000506880 FHDC1Q9C0D6 1143 aaPredicted RBP10.67□□□□□ -0.7
PDGFC-205ENST00000506880 VPS33BQ9H267 617 aa10.67□□□□□ -0.7
PDGFC-205ENST00000506880 PIM2Q9P1W9 311 aa10.67□□□□□ -0.7
PDGFC-205ENST00000506880 NOB1Q9ULX3 412 aaKnown RBP10.67□□□□□ -0.7
PDGFC-205ENST00000506880 BBOX1O75936 387 aa10.66□□□□□ -0.7
PDGFC-205ENST00000506880 FTSJ3Q8IY81 847 aaKnown RBP10.66□□□□□ -0.7
PDGFC-205ENST00000506880 RBM17Q96I25 401 aaKnown RBP10.66□□□□□ -0.7
PDGFC-205ENST00000506880 C9orf78Q9NZ63 289 aaPredicted RBP10.66□□□□□ -0.7
PDGFC-205ENST00000506880 FBXO3Q9UK99 471 aa10.66□□□□□ -0.7
PDGFC-205ENST00000506880 CHD4Q14839 1912 aa10.66□□□□□ -0.7
PDGFC-205ENST00000506880 IRS4O14654 1257 aaPredicted RBP10.65□□□□□ -0.7
PDGFC-205ENST00000506880 TRIM27P14373 513 aa10.65□□□□□ -0.7
PDGFC-205ENST00000506880 GPTP24298 496 aa10.65□□□□□ -0.7
PDGFC-205ENST00000506880 BICDL1Q6ZP65 573 aa10.65□□□□□ -0.7
PDGFC-205ENST00000506880 DZIP1LQ8IYY4 767 aaKnown RBP10.65□□□□□ -0.7
PDGFC-205ENST00000506880 TTLL6Q8N841 843 aa10.65□□□□□ -0.7
PDGFC-205ENST00000506880 TMX4Q9H1E5 349 aaPredicted RBP10.65□□□□□ -0.7
PDGFC-205ENST00000506880 LTBP3Q9NS15 1303 aa10.64□□□□□ -0.71
PDGFC-205ENST00000506880 ZC3H4Q9UPT8 1303 aaKnown RBP10.64□□□□□ -0.71
PDGFC-205ENST00000506880 SENP3-EIF4A1A0A087X0R7 540 aa10.64□□□□□ -0.71
PDGFC-205ENST00000506880 CSF1RP07333 972 aa10.64□□□□□ -0.71
PDGFC-205ENST00000506880 CASP7P55210 303 aa10.64□□□□□ -0.71
PDGFC-205ENST00000506880 DALRD3Q5D0E6 543 aaKnown RBP10.64□□□□□ -0.71
PDGFC-205ENST00000506880 SMIM5Q71RC9 77 aa10.64□□□□□ -0.71
PDGFC-205ENST00000506880 DDX46Q7L014 1031 aaKnown RBP10.64□□□□□ -0.71
PDGFC-205ENST00000506880 RPGRQ92834 1020 aaKnown RBP10.64□□□□□ -0.71
PDGFC-205ENST00000506880 CDC5LQ99459 802 aaKnown RBP10.64□□□□□ -0.71
PDGFC-205ENST00000506880 DDX19BQ9UMR2 479 aa10.64□□□□□ -0.71
PDGFC-205ENST00000506880 COL11A2P13942 1736 aaPredicted RBP10.64□□□□□ -0.71
PDGFC-205ENST00000506880 ATP5J2-PTCD1G3V325 749 aa10.63□□□□□ -0.71
PDGFC-205ENST00000506880 CTSWP56202 376 aa10.63□□□□□ -0.71
PDGFC-205ENST00000506880 RABL6Q3YEC7 729 aaPredicted RBP10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms