RNA–Protein interactions for RNA: ENST00000506018.5

NR1I3-222, Transcript of nuclear receptor subfamily 1 group I member 3, human

TSL 1 (best)

Gene NR1I3, Length 1,380 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1I3-222	ENST00000506018	CFAP44	Q96MT7	982 aa		13.55	□□□□□ -0.24
NR1I3-222	ENST00000506018	RIC1	Q4ADV7	1423 aa		13.54	□□□□□ -0.24
NR1I3-222	ENST00000506018	VEGFA	P15692	232 aa	Predicted RBP	13.54	□□□□□ -0.24
NR1I3-222	ENST00000506018	APLP1	P51693	650 aa		13.54	□□□□□ -0.24
NR1I3-222	ENST00000506018	FSTL1	Q12841	308 aa		13.54	□□□□□ -0.24
NR1I3-222	ENST00000506018	NUTM1	Q86Y26	1132 aa		13.54	□□□□□ -0.24
NR1I3-222	ENST00000506018	ZNF34	Q8IZ26	560 aa		13.54	□□□□□ -0.24
NR1I3-222	ENST00000506018	NECTIN2	Q92692	538 aa		13.54	□□□□□ -0.24
NR1I3-222	ENST00000506018	CHMP4A	Q9BY43	222 aa		13.54	□□□□□ -0.24
NR1I3-222	ENST00000506018	TMX4	Q9H1E5	349 aa	Predicted RBP	13.54	□□□□□ -0.24
NR1I3-222	ENST00000506018	DDX21	Q9NR30	783 aa	Known RBP eCLIP	13.54	□□□□□ -0.24
NR1I3-222	ENST00000506018	RNF123	Q5XPI4	1314 aa		13.54	□□□□□ -0.24
NR1I3-222	ENST00000506018	AIMP1	Q12904	312 aa	Known RBP	13.53	□□□□□ -0.24
NR1I3-222	ENST00000506018	PDIA6	Q15084	440 aa		13.53	□□□□□ -0.24
NR1I3-222	ENST00000506018	HDGFL1	Q5TGJ6	251 aa		13.53	□□□□□ -0.24
NR1I3-222	ENST00000506018	RBM17	Q96I25	401 aa	Known RBP	13.53	□□□□□ -0.24
NR1I3-222	ENST00000506018	UTP14A	Q9BVJ6	771 aa	Known RBP	13.53	□□□□□ -0.24
NR1I3-222	ENST00000506018	APAF1	O14727	1248 aa		13.52	□□□□□ -0.25
NR1I3-222	ENST00000506018	GNAI1	P63096	354 aa		13.52	□□□□□ -0.25
NR1I3-222	ENST00000506018	FKBP4	Q02790	459 aa	Known RBP eCLIP	13.52	□□□□□ -0.25
NR1I3-222	ENST00000506018	CRY2	Q49AN0	593 aa		13.52	□□□□□ -0.25
NR1I3-222	ENST00000506018	GRIPAP1	Q4V328	841 aa		13.52	□□□□□ -0.25
NR1I3-222	ENST00000506018	SUSD4	Q5VX71	490 aa		13.52	□□□□□ -0.25
NR1I3-222	ENST00000506018	CC2D2B	Q6DHV5	1058 aa		13.52	□□□□□ -0.25
NR1I3-222	ENST00000506018	COPS6	Q7L5N1	327 aa		13.52	□□□□□ -0.25
NR1I3-222	ENST00000506018	SMC1B	Q8NDV3	1235 aa		13.52	□□□□□ -0.25
NR1I3-222	ENST00000506018	NLRP3	Q96P20	1036 aa		13.52	□□□□□ -0.25
NR1I3-222	ENST00000506018	IFT57	Q9NWB7	429 aa		13.52	□□□□□ -0.25
NR1I3-222	ENST00000506018	DBF4	Q9UBU7	674 aa	Predicted RBP	13.52	□□□□□ -0.25
NR1I3-222	ENST00000506018	UBN2	Q6ZU65	1347 aa		13.52	□□□□□ -0.25
NR1I3-222	ENST00000506018	ABCC12	Q96J65	1359 aa		13.52	□□□□□ -0.25
NR1I3-222	ENST00000506018	WDR90	Q96KV7	1748 aa		13.52	□□□□□ -0.25
NR1I3-222	ENST00000506018	ANP32C	O43423	234 aa		13.51	□□□□□ -0.25
NR1I3-222	ENST00000506018	NTSR2	O95665	410 aa		13.51	□□□□□ -0.25
NR1I3-222	ENST00000506018	ANXA1	P04083	346 aa		13.51	□□□□□ -0.25
NR1I3-222	ENST00000506018	PRELP	P51888	382 aa		13.51	□□□□□ -0.25
NR1I3-222	ENST00000506018	XAGE3	Q8WTP9	111 aa		13.51	□□□□□ -0.25
NR1I3-222	ENST00000506018	PROSER3	Q2NL68	480 aa		13.5	□□□□□ -0.25
NR1I3-222	ENST00000506018	LRP10	Q7Z4F1	713 aa		13.5	□□□□□ -0.25
NR1I3-222	ENST00000506018	C7orf43	Q8WVR3	580 aa		13.5	□□□□□ -0.25
NR1I3-222	ENST00000506018	HYPK	Q9NX55	129 aa		13.5	□□□□□ -0.25
NR1I3-222	ENST00000506018	CHPF2	Q9P2E5	772 aa		13.5	□□□□□ -0.25
NR1I3-222	ENST00000506018	HOXA10	P31260	410 aa	Predicted RBP	13.49	□□□□□ -0.25
NR1I3-222	ENST00000506018	TCIRG1	Q13488	830 aa		13.49	□□□□□ -0.25
NR1I3-222	ENST00000506018	DUSP27	Q5VZP5	1158 aa		13.49	□□□□□ -0.25
NR1I3-222	ENST00000506018	CRAMP1	Q96RY5	1269 aa		13.49	□□□□□ -0.25
NR1I3-222	ENST00000506018	MBIP	Q9NS73	344 aa		13.49	□□□□□ -0.25
NR1I3-222	ENST00000506018	SCN4A	P35499	1836 aa		13.49	□□□□□ -0.25
NR1I3-222	ENST00000506018	IQCA1L	A6NCM1	817 aa		13.48	□□□□□ -0.25
NR1I3-222	ENST00000506018	KRT24	Q2M2I5	525 aa		13.48	□□□□□ -0.25
NR1I3-222	ENST00000506018	PLBD2	Q8NHP8	589 aa		13.48	□□□□□ -0.25
NR1I3-222	ENST00000506018	JDP2	Q8WYK2	163 aa		13.48	□□□□□ -0.25
NR1I3-222	ENST00000506018	PSMD1	Q99460	953 aa		13.48	□□□□□ -0.25
NR1I3-222	ENST00000506018	TRMT112	Q9UI30	125 aa	Known RBP	13.48	□□□□□ -0.25
NR1I3-222	ENST00000506018	LAMB2	P55268	1798 aa		13.47	□□□□□ -0.25
NR1I3-222	ENST00000506018	SH3TC1	Q8TE82	1336 aa		13.47	□□□□□ -0.25
NR1I3-222	ENST00000506018	PPEF1	O14829	653 aa	Predicted RBP	13.47	□□□□□ -0.25
NR1I3-222	ENST00000506018	IARS	P41252	1262 aa	Known RBP	13.47	□□□□□ -0.25
NR1I3-222	ENST00000506018	SLC10A5	Q5PT55	438 aa		13.47	□□□□□ -0.25
NR1I3-222	ENST00000506018	ANKRD13D	Q6ZTN6	518 aa		13.47	□□□□□ -0.25
NR1I3-222	ENST00000506018	NLRP10	Q86W26	655 aa		13.47	□□□□□ -0.25
NR1I3-222	ENST00000506018	SYNE4	Q8N205	404 aa		13.47	□□□□□ -0.25
NR1I3-222	ENST00000506018	ZNF277	Q9NRM2	450 aa	Predicted RBP	13.47	□□□□□ -0.25
NR1I3-222	ENST00000506018	CEP350	Q5VT06	3117 aa		13.46	□□□□□ -0.25
NR1I3-222	ENST00000506018	ZNF853	P0CG23	659 aa		13.46	□□□□□ -0.25
NR1I3-222	ENST00000506018	GOLGA2	Q08379	1002 aa		13.46	□□□□□ -0.25
NR1I3-222	ENST00000506018	DIEXF	Q68CQ4	756 aa	Known RBP	13.46	□□□□□ -0.25
NR1I3-222	ENST00000506018	HSP90B1	P14625	803 aa	Known RBP	13.45	□□□□□ -0.26
NR1I3-222	ENST00000506018	DDX46	Q7L014	1031 aa	Known RBP	13.45	□□□□□ -0.26
NR1I3-222	ENST00000506018	RIC3	Q7Z5B4	369 aa		13.45	□□□□□ -0.26
NR1I3-222	ENST00000506018	MRS2	Q9HD23	443 aa		13.45	□□□□□ -0.26
NR1I3-222	ENST00000506018	DDN	O94850	711 aa	Predicted RBP	13.45	□□□□□ -0.26
NR1I3-222	ENST00000506018	CCDC27	Q2M243	656 aa		13.45	□□□□□ -0.26
NR1I3-222	ENST00000506018	CCDC30	Q5VVM6	783 aa		13.45	□□□□□ -0.26
NR1I3-222	ENST00000506018	SUPT20H	Q8NEM7	779 aa		13.45	□□□□□ -0.26
NR1I3-222	ENST00000506018	TCERG1	O14776	1098 aa	Known RBP	13.44	□□□□□ -0.26
NR1I3-222	ENST00000506018	BBOX1	O75936	387 aa		13.44	□□□□□ -0.26
NR1I3-222	ENST00000506018	DDX58	O95786	925 aa	Known RBP	13.44	□□□□□ -0.26
NR1I3-222	ENST00000506018	EIF6	P56537	245 aa	Known RBP	13.44	□□□□□ -0.26
NR1I3-222	ENST00000506018	OLFM4	Q6UX06	510 aa		13.44	□□□□□ -0.26
NR1I3-222	ENST00000506018	LARGE2	Q8N3Y3	721 aa		13.44	□□□□□ -0.26
NR1I3-222	ENST00000506018	CACNA1F	O60840	1977 aa		13.43	□□□□□ -0.26
NR1I3-222	ENST00000506018	ABCC4	O15439	1325 aa		13.43	□□□□□ -0.26
NR1I3-222	ENST00000506018	ELL2	O00472	640 aa	Predicted RBP	13.43	□□□□□ -0.26
NR1I3-222	ENST00000506018	HCLS1	P14317	486 aa	Predicted RBP	13.43	□□□□□ -0.26
NR1I3-222	ENST00000506018	TMC4	Q7Z404	712 aa		13.43	□□□□□ -0.26
NR1I3-222	ENST00000506018	L3MBTL3	Q96JM7	780 aa	Predicted RBP	13.43	□□□□□ -0.26
NR1I3-222	ENST00000506018	VPS33B	Q9H267	617 aa		13.43	□□□□□ -0.26
NR1I3-222	ENST00000506018	ATP6V0A2	Q9Y487	856 aa		13.43	□□□□□ -0.26
NR1I3-222	ENST00000506018	DDX60	Q8IY21	1712 aa	Known RBP	13.43	□□□□□ -0.26
NR1I3-222	ENST00000506018	POTEC	B2RU33	542 aa		13.42	□□□□□ -0.26
NR1I3-222	ENST00000506018	FZD9	O00144	591 aa		13.42	□□□□□ -0.26
NR1I3-222	ENST00000506018	CHADL	Q6NUI6	762 aa		13.42	□□□□□ -0.26
NR1I3-222	ENST00000506018	GPC2	Q8N158	579 aa		13.42	□□□□□ -0.26
NR1I3-222	ENST00000506018	ISCA1	Q9BUE6	129 aa		13.42	□□□□□ -0.26
NR1I3-222	ENST00000506018	STK31	Q9BXU1	1019 aa		13.42	□□□□□ -0.26
NR1I3-222	ENST00000506018	HACL1	Q9UJ83	578 aa		13.42	□□□□□ -0.26
NR1I3-222	ENST00000506018	ATP5J2-PTCD1	G3V325	749 aa		13.41	□□□□□ -0.26
NR1I3-222	ENST00000506018	LMOD1	P29536	600 aa	Predicted RBP	13.41	□□□□□ -0.26
NR1I3-222	ENST00000506018	TRIM28	Q13263	835 aa	Known RBP	13.41	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms