RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 NGLY1Q96IV0 654 aa10.38□□□□□ -0.75
VIM-207ENST00000495528 MKNK1Q9BUB5 465 aa10.38□□□□□ -0.75
VIM-207ENST00000495528 FMN1Q68DA7 1419 aa10.38□□□□□ -0.75
VIM-207ENST00000495528 ARHGAP35Q9NRY4 1499 aa10.37□□□□□ -0.75
VIM-207ENST00000495528 TXLNAP40222 546 aa10.37□□□□□ -0.75
VIM-207ENST00000495528 FKBP5Q13451 457 aaPredicted RBP10.37□□□□□ -0.75
VIM-207ENST00000495528 C9orf84Q5VXU9 1444 aa10.37□□□□□ -0.75
VIM-207ENST00000495528 CCDC155Q8N6L0 562 aa10.37□□□□□ -0.75
VIM-207ENST00000495528 VTI1AQ96AJ9 217 aa10.37□□□□□ -0.75
VIM-207ENST00000495528 CXXC1Q9P0U4 656 aaPredicted RBP10.37□□□□□ -0.75
VIM-207ENST00000495528 SLC35F4A4IF30 521 aa10.36□□□□□ -0.75
VIM-207ENST00000495528 EML1O00423 815 aa10.36□□□□□ -0.75
VIM-207ENST00000495528 SCNN1AP37088 669 aa10.36□□□□□ -0.75
VIM-207ENST00000495528 VEGFBP49765 207 aa10.36□□□□□ -0.75
VIM-207ENST00000495528 WDR44Q5JSH3 913 aa10.36□□□□□ -0.75
VIM-207ENST00000495528 RIPOR1Q6ZS17 1223 aa10.36□□□□□ -0.75
VIM-207ENST00000495528 C2orf49Q9BVC5 232 aaPredicted RBP10.36□□□□□ -0.75
VIM-207ENST00000495528 ARHGEF12Q9NZN5 1544 aa10.36□□□□□ -0.75
VIM-207ENST00000495528 MSX1P28360 303 aa10.35□□□□□ -0.75
VIM-207ENST00000495528 PDE4CQ08493 712 aa10.35□□□□□ -0.75
VIM-207ENST00000495528 NBPF1Q3BBV0 1214 aa10.35□□□□□ -0.75
VIM-207ENST00000495528 DYRK1BQ9Y463 629 aa10.35□□□□□ -0.75
VIM-207ENST00000495528 TROQ12816 1431 aaPredicted RBP10.34□□□□□ -0.75
VIM-207ENST00000495528 A0A1B0GTH6 734 aa10.34□□□□□ -0.75
VIM-207ENST00000495528 FOXO3O43524 673 aa10.34□□□□□ -0.75
VIM-207ENST00000495528 CAPN12Q6ZSI9 719 aa10.34□□□□□ -0.75
VIM-207ENST00000495528 TATP17735 454 aaPredicted RBP10.33□□□□□ -0.76
VIM-207ENST00000495528 SSFA2P28290 1259 aa10.33□□□□□ -0.76
VIM-207ENST00000495528 PHACTR1Q9C0D0 580 aa10.33□□□□□ -0.76
VIM-207ENST00000495528 RUBCNLQ9H714 662 aa10.33□□□□□ -0.76
VIM-207ENST00000495528 ZNF518AQ6AHZ1 1483 aa10.33□□□□□ -0.76
VIM-207ENST00000495528 FER1L4A9Z1Z3 1794 aa10.33□□□□□ -0.76
VIM-207ENST00000495528 KIF14Q15058 1648 aa10.33□□□□□ -0.76
VIM-207ENST00000495528 ARHGAP5Q13017 1502 aa10.33□□□□□ -0.76
VIM-207ENST00000495528 F11P03951 625 aa10.32□□□□□ -0.76
VIM-207ENST00000495528 NAA30Q147X3 362 aaPredicted RBP10.32□□□□□ -0.76
VIM-207ENST00000495528 ARSJQ5FYB0 599 aaPredicted RBP10.32□□□□□ -0.76
VIM-207ENST00000495528 BICDL1Q6ZP65 573 aa10.32□□□□□ -0.76
VIM-207ENST00000495528 PPFIA3O75145 1194 aa10.31□□□□□ -0.76
VIM-207ENST00000495528 PDIA4P13667 645 aaKnown RBP10.31□□□□□ -0.76
VIM-207ENST00000495528 ATP4AP20648 1035 aa10.31□□□□□ -0.76
VIM-207ENST00000495528 ALDH16A1Q8IZ83 802 aa10.31□□□□□ -0.76
VIM-207ENST00000495528 STAG2Q8N3U4 1231 aa10.31□□□□□ -0.76
VIM-207ENST00000495528 CUEDC1Q9NWM3 386 aaPredicted RBP10.31□□□□□ -0.76
VIM-207ENST00000495528 CLIP1P30622 1438 aa10.31□□□□□ -0.76
VIM-207ENST00000495528 TRAPPC8Q9Y2L5 1435 aa10.31□□□□□ -0.76
VIM-207ENST00000495528 PHLDB3Q6NSJ2 640 aa10.3□□□□□ -0.76
VIM-207ENST00000495528 HOMEZQ8IX15 550 aa10.3□□□□□ -0.76
VIM-207ENST00000495528 PGBD3Q8N328 593 aa10.3□□□□□ -0.76
VIM-207ENST00000495528 RHPN1Q8TCX5 695 aa10.3□□□□□ -0.76
VIM-207ENST00000495528 ZNF775Q96BV0 537 aaPredicted RBP10.3□□□□□ -0.76
VIM-207ENST00000495528 ZDHHC3Q9NYG2 299 aa10.3□□□□□ -0.76
VIM-207ENST00000495528 NXF1Q9UBU9 619 aaKnown RBP10.3□□□□□ -0.76
VIM-207ENST00000495528 UHRF1BP1Q6BDS2 1440 aa10.3□□□□□ -0.76
VIM-207ENST00000495528 KDM5CP41229 1560 aa10.3□□□□□ -0.76
VIM-207ENST00000495528 MYO5CQ9NQX4 1742 aa10.3□□□□□ -0.76
VIM-207ENST00000495528 MLH3Q9UHC1 1453 aa10.3□□□□□ -0.76
VIM-207ENST00000495528 CDC14CA4D256 554 aa10.29□□□□□ -0.76
VIM-207ENST00000495528 ITGA6P23229 1130 aa10.29□□□□□ -0.76
VIM-207ENST00000495528 HIRAP54198 1017 aaPredicted RBP10.29□□□□□ -0.76
VIM-207ENST00000495528 POTEAQ6S8J7 498 aa10.29□□□□□ -0.76
VIM-207ENST00000495528 SEPT3Q9UH03 358 aa10.29□□□□□ -0.76
VIM-207ENST00000495528 DIP2CQ9Y2E4 1556 aa10.28□□□□□ -0.76
VIM-207ENST00000495528 KLRG1Q96E93 195 aa10.28□□□□□ -0.76
VIM-207ENST00000495528 PREX1Q8TCU6 1659 aa10.28□□□□□ -0.76
VIM-207ENST00000495528 DBN1Q16643 649 aa10.27□□□□□ -0.77
VIM-207ENST00000495528 B4GALNT3Q6L9W6 998 aa10.27□□□□□ -0.77
VIM-207ENST00000495528 ILDR2Q71H61 639 aa10.27□□□□□ -0.77
VIM-207ENST00000495528 C1orf216Q8TAB5 229 aa10.27□□□□□ -0.77
VIM-207ENST00000495528 ZIC5Q96T25 663 aa10.27□□□□□ -0.77
VIM-207ENST00000495528 QTRT2Q9H974 415 aaKnown RBP10.27□□□□□ -0.77
VIM-207ENST00000495528 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.27□□□□□ -0.77
VIM-207ENST00000495528 STRCQ7RTU9 1775 aa10.26□□□□□ -0.77
VIM-207ENST00000495528 CASKIN1Q8WXD9 1431 aa10.26□□□□□ -0.77
VIM-207ENST00000495528 A0A1W2PNR3 127 aa10.26□□□□□ -0.77
VIM-207ENST00000495528 PTCD1O75127 700 aaKnown RBP10.26□□□□□ -0.77
VIM-207ENST00000495528 C1orf53Q5VUE5 145 aa10.26□□□□□ -0.77
VIM-207ENST00000495528 VWA5B2Q8N398 1253 aa10.26□□□□□ -0.77
VIM-207ENST00000495528 TRAIPQ9BWF2 469 aa10.26□□□□□ -0.77
VIM-207ENST00000495528 SAP130Q9H0E3 1048 aa10.26□□□□□ -0.77
VIM-207ENST00000495528 NEUROD4Q9HD90 331 aa10.26□□□□□ -0.77
VIM-207ENST00000495528 GJA3Q9Y6H8 435 aa10.26□□□□□ -0.77
VIM-207ENST00000495528 PTPRTO14522 1441 aa10.25□□□□□ -0.77
VIM-207ENST00000495528 CDC42BPBQ9Y5S2 1711 aa10.25□□□□□ -0.77
VIM-207ENST00000495528 SETD1BQ9UPS6 1966 aaKnown RBP10.25□□□□□ -0.77
VIM-207ENST00000495528 AGLP35573 1532 aa10.25□□□□□ -0.77
VIM-207ENST00000495528 HNRNPMP52272 730 aaKnown RBP eCLIP10.25□□□□□ -0.77
VIM-207ENST00000495528 LRRC69Q6ZNQ3 347 aa10.25□□□□□ -0.77
VIM-207ENST00000495528 NUCKS1Q9H1E3 243 aaKnown RBP10.25□□□□□ -0.77
VIM-207ENST00000495528 KLK14Q9P0G3 267 aa10.25□□□□□ -0.77
VIM-207ENST00000495528 REREQ9P2R6 1566 aa10.25□□□□□ -0.77
VIM-207ENST00000495528 ABCA6Q8N139 1617 aa10.25□□□□□ -0.77
VIM-207ENST00000495528 DISP3Q9P2K9 1392 aa10.25□□□□□ -0.77
VIM-207ENST00000495528 LRRIQ1Q96JM4 1722 aa10.24□□□□□ -0.77
VIM-207ENST00000495528 ABCC1P33527 1531 aa10.24□□□□□ -0.77
VIM-207ENST00000495528 H7C1W4 665 aa10.24□□□□□ -0.77
VIM-207ENST00000495528 TERTO14746 1132 aaKnown RBP10.24□□□□□ -0.77
VIM-207ENST00000495528 DGKZQ13574 1117 aa10.24□□□□□ -0.77
VIM-207ENST00000495528 RTN1Q16799 776 aa10.24□□□□□ -0.77
VIM-207ENST00000495528 EFHC2Q5JST6 749 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms