RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 LEO1Q8WVC0 666 aaPredicted RBP11.44□□□□□ -0.58
SYNE1-230ENST00000495090 SPATA32Q96LK8 384 aa11.44□□□□□ -0.58
SYNE1-230ENST00000495090 LARP6Q9BRS8 491 aaKnown RBP11.44□□□□□ -0.58
SYNE1-230ENST00000495090 SPG7Q9UQ90 795 aa11.44□□□□□ -0.58
SYNE1-230ENST00000495090 IGSF1Q8N6C5 1336 aa11.43□□□□□ -0.58
SYNE1-230ENST00000495090 HIP1O00291 1037 aa11.43□□□□□ -0.58
SYNE1-230ENST00000495090 CTAGE5O15320 804 aa11.43□□□□□ -0.58
SYNE1-230ENST00000495090 MAP4K4O95819 1239 aaPredicted RBP11.43□□□□□ -0.58
SYNE1-230ENST00000495090 GTF2E1P29083 439 aaPredicted RBP11.43□□□□□ -0.58
SYNE1-230ENST00000495090 PTPN14Q15678 1187 aa11.43□□□□□ -0.58
SYNE1-230ENST00000495090 CAMK4Q16566 473 aa11.43□□□□□ -0.58
SYNE1-230ENST00000495090 KMT5BQ4FZB7 885 aa11.43□□□□□ -0.58
SYNE1-230ENST00000495090 TPRNQ4KMQ1 711 aa11.43□□□□□ -0.58
SYNE1-230ENST00000495090 PRPF40BQ6NWY9 871 aaKnown RBP11.43□□□□□ -0.58
SYNE1-230ENST00000495090 TMEM51Q9NW97 253 aa11.43□□□□□ -0.58
SYNE1-230ENST00000495090 TPCN1Q9ULQ1 816 aa11.43□□□□□ -0.58
SYNE1-230ENST00000495090 USP6P35125 1406 aa11.43□□□□□ -0.58
SYNE1-230ENST00000495090 SBNO1A3KN83 1393 aa11.43□□□□□ -0.58
SYNE1-230ENST00000495090 FLT4P35916 1363 aa11.43□□□□□ -0.58
SYNE1-230ENST00000495090 PRR36Q9H6K5 1346 aa11.43□□□□□ -0.58
SYNE1-230ENST00000495090 IGSF3O75054 1194 aa11.43□□□□□ -0.58
SYNE1-230ENST00000495090 CPA1P15085 419 aa11.43□□□□□ -0.58
SYNE1-230ENST00000495090 PTH1RQ03431 593 aa11.43□□□□□ -0.58
SYNE1-230ENST00000495090 FBXO31Q5XUX0 539 aaPredicted RBP11.43□□□□□ -0.58
SYNE1-230ENST00000495090 CKAP2LQ8IYA6 745 aa11.43□□□□□ -0.58
SYNE1-230ENST00000495090 GPATCH3Q96I76 525 aa11.43□□□□□ -0.58
SYNE1-230ENST00000495090 METP08581 1390 aa11.42□□□□□ -0.58
SYNE1-230ENST00000495090 PLEKHG3A1L390 1219 aa11.42□□□□□ -0.58
SYNE1-230ENST00000495090 FOXO3O43524 673 aa11.42□□□□□ -0.58
SYNE1-230ENST00000495090 TUBB4AP04350 444 aa11.42□□□□□ -0.58
SYNE1-230ENST00000495090 MTX1Q13505 466 aa11.42□□□□□ -0.58
SYNE1-230ENST00000495090 IQCB1Q15051 598 aa11.42□□□□□ -0.58
SYNE1-230ENST00000495090 CCDC144BQ3MJ40 725 aa11.42□□□□□ -0.58
SYNE1-230ENST00000495090 CCDC144CPQ8IYA2 1237 aa11.42□□□□□ -0.58
SYNE1-230ENST00000495090 BBXQ8WY36 941 aaPredicted RBP11.42□□□□□ -0.58
SYNE1-230ENST00000495090 MAP4K1Q92918 833 aa11.42□□□□□ -0.58
SYNE1-230ENST00000495090 EVI5LQ96CN4 794 aa11.42□□□□□ -0.58
SYNE1-230ENST00000495090 CHMP4AQ9BY43 222 aa11.42□□□□□ -0.58
SYNE1-230ENST00000495090 CALCOCO1Q9P1Z2 691 aa11.42□□□□□ -0.58
SYNE1-230ENST00000495090 ZNF215Q9UL58 517 aaPredicted RBP11.42□□□□□ -0.58
SYNE1-230ENST00000495090 RIMS1Q86UR5 1692 aaKnown RBP11.41□□□□□ -0.58
SYNE1-230ENST00000495090 GOLGA6L19H0YKK7 550 aa11.41□□□□□ -0.58
SYNE1-230ENST00000495090 SRGAP3O43295 1099 aa11.41□□□□□ -0.58
SYNE1-230ENST00000495090 SLU7O95391 586 aaKnown RBP11.41□□□□□ -0.58
SYNE1-230ENST00000495090 DHX8Q14562 1220 aaKnown RBP11.41□□□□□ -0.58
SYNE1-230ENST00000495090 CREB3L3Q68CJ9 461 aa11.41□□□□□ -0.58
SYNE1-230ENST00000495090 TIGD1Q96MW7 591 aa11.41□□□□□ -0.58
SYNE1-230ENST00000495090 DNAJC25Q9H1X3 360 aa11.41□□□□□ -0.58
SYNE1-230ENST00000495090 ECHDC1Q9NTX5 307 aa11.41□□□□□ -0.58
SYNE1-230ENST00000495090 NR1I2O75469 434 aa11.41□□□□□ -0.58
SYNE1-230ENST00000495090 KCNJ6P48051 423 aa11.41□□□□□ -0.58
SYNE1-230ENST00000495090 GSDMDP57764 484 aa11.41□□□□□ -0.58
SYNE1-230ENST00000495090 NAA30Q147X3 362 aaPredicted RBP11.41□□□□□ -0.58
SYNE1-230ENST00000495090 TSGA10IPQ3SY00 556 aa11.41□□□□□ -0.58
SYNE1-230ENST00000495090 NECAB1Q8N987 351 aa11.41□□□□□ -0.58
SYNE1-230ENST00000495090 RBM8AQ9Y5S9 174 aaKnown RBP11.41□□□□□ -0.58
SYNE1-230ENST00000495090 JCADQ9P266 1359 aa11.41□□□□□ -0.58
SYNE1-230ENST00000495090 NCKAP5LQ9HCH0 1330 aa11.4□□□□□ -0.58
SYNE1-230ENST00000495090 PTPRUQ92729 1446 aa11.4□□□□□ -0.58
SYNE1-230ENST00000495090 AGLP35573 1532 aa11.4□□□□□ -0.58
SYNE1-230ENST00000495090 CEP170BQ9Y4F5 1589 aaPredicted RBP11.4□□□□□ -0.58
SYNE1-230ENST00000495090 GNAT3A8MTJ3 354 aa11.4□□□□□ -0.58
SYNE1-230ENST00000495090 SKILP12757 684 aa11.4□□□□□ -0.58
SYNE1-230ENST00000495090 CCZ1BP86790 482 aa11.4□□□□□ -0.58
SYNE1-230ENST00000495090 CCZ1P86791 482 aaPredicted RBP11.4□□□□□ -0.58
SYNE1-230ENST00000495090 STX1AQ16623 288 aa11.4□□□□□ -0.58
SYNE1-230ENST00000495090 FBXO38Q6PIJ6 1188 aa11.4□□□□□ -0.58
SYNE1-230ENST00000495090 ERC1Q8IUD2 1116 aa11.4□□□□□ -0.58
SYNE1-230ENST00000495090 CCAR2Q8N163 923 aaKnown RBP11.4□□□□□ -0.58
SYNE1-230ENST00000495090 CLASRPQ8N2M8 674 aaKnown RBP11.4□□□□□ -0.58
SYNE1-230ENST00000495090 PGBD1Q96JS3 809 aa11.4□□□□□ -0.58
SYNE1-230ENST00000495090 ZSCAN16Q9H4T2 348 aaPredicted RBP11.4□□□□□ -0.58
SYNE1-230ENST00000495090 L2HGDHQ9H9P8 463 aa11.4□□□□□ -0.58
SYNE1-230ENST00000495090 HMG20BQ9P0W2 317 aa11.4□□□□□ -0.58
SYNE1-230ENST00000495090 DIP2AQ14689 1571 aa11.39□□□□□ -0.59
SYNE1-230ENST00000495090 HOXB7P09629 217 aa11.39□□□□□ -0.59
SYNE1-230ENST00000495090 H2AFXP16104 143 aaPredicted RBP11.39□□□□□ -0.59
SYNE1-230ENST00000495090 RPS6KB1P23443 525 aa11.39□□□□□ -0.59
SYNE1-230ENST00000495090 BMS1Q14692 1282 aaKnown RBP11.39□□□□□ -0.59
SYNE1-230ENST00000495090 BLOC1S2Q6QNY1 142 aa11.39□□□□□ -0.59
SYNE1-230ENST00000495090 FERMT3Q86UX7 667 aa11.39□□□□□ -0.59
SYNE1-230ENST00000495090 BICD2Q8TD16 824 aa11.39□□□□□ -0.59
SYNE1-230ENST00000495090 IMPACTQ9P2X3 320 aa11.39□□□□□ -0.59
SYNE1-230ENST00000495090 CFAP45Q9UL16 551 aa11.39□□□□□ -0.59
SYNE1-230ENST00000495090 CHMP3Q9Y3E7 222 aa11.39□□□□□ -0.59
SYNE1-230ENST00000495090 ERBB3P21860 1342 aa11.39□□□□□ -0.59
SYNE1-230ENST00000495090 SLC27A2O14975 620 aa11.39□□□□□ -0.59
SYNE1-230ENST00000495090 RESTQ13127 1097 aa11.39□□□□□ -0.59
SYNE1-230ENST00000495090 TAF7Q15545 349 aaPredicted RBP11.39□□□□□ -0.59
SYNE1-230ENST00000495090 TXNDC2Q86VQ3 553 aa11.39□□□□□ -0.59
SYNE1-230ENST00000495090 ZNF592Q92610 1267 aa11.39□□□□□ -0.59
SYNE1-230ENST00000495090 OSBPL5Q9H0X9 879 aaPredicted RBP11.39□□□□□ -0.59
SYNE1-230ENST00000495090 NPHP4O75161 1426 aaPredicted RBP11.38□□□□□ -0.59
SYNE1-230ENST00000495090 ACEP12821 1306 aa11.38□□□□□ -0.59
SYNE1-230ENST00000495090 ADCY9O60503 1353 aa11.38□□□□□ -0.59
SYNE1-230ENST00000495090 CCDC69A6NI79 296 aa11.38□□□□□ -0.59
SYNE1-230ENST00000495090 USP27XA6NNY8 438 aa11.38□□□□□ -0.59
SYNE1-230ENST00000495090 TULP2O00295 520 aa11.38□□□□□ -0.59
SYNE1-230ENST00000495090 ELF2Q15723 593 aa11.38□□□□□ -0.59
SYNE1-230ENST00000495090 BEND3Q5T5X7 828 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms