RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 CASTP20810 708 aaKnown RBP19.89■□□□□ 0.77
CCDC88B-210ENST00000494566 IFNL2Q8IZJ0 200 aa19.89■□□□□ 0.77
CCDC88B-210ENST00000494566 BRD1O95696 1058 aa19.88■□□□□ 0.77
CCDC88B-210ENST00000494566 LRSAM1Q6UWE0 723 aa19.88■□□□□ 0.77
CCDC88B-210ENST00000494566 TTC5Q8N0Z6 440 aa19.88■□□□□ 0.77
CCDC88B-210ENST00000494566 TTC41PQ6P2S7 1318 aa19.88■□□□□ 0.77
CCDC88B-210ENST00000494566 FIBPO43427 364 aa19.88■□□□□ 0.77
CCDC88B-210ENST00000494566 LARGE1O95461 756 aa19.88■□□□□ 0.77
CCDC88B-210ENST00000494566 CNPY2Q9Y2B0 182 aa19.88■□□□□ 0.77
CCDC88B-210ENST00000494566 ALS2Q96Q42 1657 aa19.88■□□□□ 0.77
CCDC88B-210ENST00000494566 UQCRHLA0A096LP55 91 aa19.87■□□□□ 0.77
CCDC88B-210ENST00000494566 UQCRHP07919 91 aa19.87■□□□□ 0.77
CCDC88B-210ENST00000494566 USP48Q86UV5 1035 aa19.87■□□□□ 0.77
CCDC88B-210ENST00000494566 CAMTA1Q9Y6Y1 1673 aa19.87■□□□□ 0.77
CCDC88B-210ENST00000494566 OFD1O75665 1012 aa19.87■□□□□ 0.77
CCDC88B-210ENST00000494566 NEXNQ0ZGT2 675 aa19.87■□□□□ 0.77
CCDC88B-210ENST00000494566 GCKRQ14397 625 aa19.86■□□□□ 0.77
CCDC88B-210ENST00000494566 LARP1Q6PKG0 1096 aaKnown RBP19.86■□□□□ 0.77
CCDC88B-210ENST00000494566 RUFY3Q7L099 469 aa19.86■□□□□ 0.77
CCDC88B-210ENST00000494566 USP25Q9UHP3 1055 aa19.86■□□□□ 0.77
CCDC88B-210ENST00000494566 OVOS2A0A0G2JMS6 1433 aa19.86■□□□□ 0.77
CCDC88B-210ENST00000494566 CHGBP05060 677 aa19.86■□□□□ 0.77
CCDC88B-210ENST00000494566 UBE3BQ7Z3V4 1068 aa19.86■□□□□ 0.77
CCDC88B-210ENST00000494566 TCHHQ07283 1943 aa19.86■□□□□ 0.77
CCDC88B-210ENST00000494566 STRCP1A6NGW2 1772 aa19.86■□□□□ 0.77
CCDC88B-210ENST00000494566 USP42Q9H9J4 1324 aaKnown RBP19.86■□□□□ 0.77
CCDC88B-210ENST00000494566 ANKRD13DQ6ZTN6 518 aa19.86■□□□□ 0.77
CCDC88B-210ENST00000494566 GPATCH3Q96I76 525 aa19.85■□□□□ 0.77
CCDC88B-210ENST00000494566 JAKMIP1Q96N16 626 aaKnown RBP19.85■□□□□ 0.77
CCDC88B-210ENST00000494566 NMIQ13287 307 aaPredicted RBP19.85■□□□□ 0.77
CCDC88B-210ENST00000494566 TTC14Q96N46 770 aa19.85■□□□□ 0.77
CCDC88B-210ENST00000494566 CABP4P57796 275 aa19.84■□□□□ 0.77
CCDC88B-210ENST00000494566 ERC1Q8IUD2 1116 aa19.84■□□□□ 0.77
CCDC88B-210ENST00000494566 TCEANC2Q96MN5 208 aa19.84■□□□□ 0.77
CCDC88B-210ENST00000494566 KIF1AQ12756 1690 aa19.84■□□□□ 0.77
CCDC88B-210ENST00000494566 SCN11AQ9UI33 1791 aa19.84■□□□□ 0.77
CCDC88B-210ENST00000494566 METTL22Q9BUU2 404 aaPredicted RBP19.84■□□□□ 0.77
CCDC88B-210ENST00000494566 TTC12Q9H892 705 aaPredicted RBP19.84■□□□□ 0.77
CCDC88B-210ENST00000494566 KCNJ4P48050 445 aa19.83■□□□□ 0.77
CCDC88B-210ENST00000494566 TAF6LQ9Y6J9 622 aa19.83■□□□□ 0.77
CCDC88B-210ENST00000494566 A0A0D9SFI3 127 aa19.83■□□□□ 0.76
CCDC88B-210ENST00000494566 SNRPA1P09661 255 aaKnown RBP19.83■□□□□ 0.76
CCDC88B-210ENST00000494566 HCLS1P14317 486 aaPredicted RBP19.83■□□□□ 0.76
CCDC88B-210ENST00000494566 INTS4Q96HW7 963 aaKnown RBP19.83■□□□□ 0.76
CCDC88B-210ENST00000494566 PDZRN4Q6ZMN7 1036 aaPredicted RBP19.82■□□□□ 0.76
CCDC88B-210ENST00000494566 LRP10Q7Z4F1 713 aa19.82■□□□□ 0.76
CCDC88B-210ENST00000494566 TSPY26PQ9H489 355 aa19.82■□□□□ 0.76
CCDC88B-210ENST00000494566 UTYO14607 1347 aa19.82■□□□□ 0.76
CCDC88B-210ENST00000494566 CCDC83Q8IWF9 413 aa19.82■□□□□ 0.76
CCDC88B-210ENST00000494566 FSD1Q9BTV5 496 aa19.82■□□□□ 0.76
CCDC88B-210ENST00000494566 NOL7Q9UMY1 257 aaKnown RBP19.82■□□□□ 0.76
CCDC88B-210ENST00000494566 EVI5LQ96CN4 794 aa19.82■□□□□ 0.76
CCDC88B-210ENST00000494566 DCAF5Q96JK2 942 aa19.82■□□□□ 0.76
CCDC88B-210ENST00000494566 TPM2P07951 284 aa19.81■□□□□ 0.76
CCDC88B-210ENST00000494566 RPAP1Q9BWH6 1393 aaPredicted RBP19.81■□□□□ 0.76
CCDC88B-210ENST00000494566 FAM173BQ6P4H8 233 aa19.81■□□□□ 0.76
CCDC88B-210ENST00000494566 RUFY2Q8WXA3 655 aa19.81■□□□□ 0.76
CCDC88B-210ENST00000494566 PKNOX2Q96KN3 472 aa19.81■□□□□ 0.76
CCDC88B-210ENST00000494566 FMNL2Q96PY5 1086 aa19.81■□□□□ 0.76
CCDC88B-210ENST00000494566 PRDM10Q9NQV6 1147 aa19.81■□□□□ 0.76
CCDC88B-210ENST00000494566 ZKSCAN5Q9Y2L8 839 aa19.81■□□□□ 0.76
CCDC88B-210ENST00000494566 RBM8AQ9Y5S9 174 aaKnown RBP19.81■□□□□ 0.76
CCDC88B-210ENST00000494566 NECAB1Q8N987 351 aa19.8■□□□□ 0.76
CCDC88B-210ENST00000494566 ADAMTS7Q9UKP4 1686 aa19.8■□□□□ 0.76
CCDC88B-210ENST00000494566 A0A087WZG4 1122 aa19.8■□□□□ 0.76
CCDC88B-210ENST00000494566 TFCP2Q12800 502 aa19.8■□□□□ 0.76
CCDC88B-210ENST00000494566 FERMT3Q86UX7 667 aa19.8■□□□□ 0.76
CCDC88B-210ENST00000494566 IL17RAQ96F46 866 aa19.8■□□□□ 0.76
CCDC88B-210ENST00000494566 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.8■□□□□ 0.76
CCDC88B-210ENST00000494566 COL18A1P39060 1754 aa19.79■□□□□ 0.76
CCDC88B-210ENST00000494566 GIMAP6Q6P9H5 292 aa19.79■□□□□ 0.76
CCDC88B-210ENST00000494566 ZNF589Q86UQ0 364 aaPredicted RBP19.79■□□□□ 0.76
CCDC88B-210ENST00000494566 LIMCH1Q9UPQ0 1083 aa19.79■□□□□ 0.76
CCDC88B-210ENST00000494566 CCDC171Q6TFL3 1326 aa19.79■□□□□ 0.76
CCDC88B-210ENST00000494566 TNS3Q68CZ2 1445 aa19.79■□□□□ 0.76
CCDC88B-210ENST00000494566 CRYBG1Q9Y4K1 1723 aa19.79■□□□□ 0.76
CCDC88B-210ENST00000494566 SPATA31A3Q5VYP0 1347 aa19.79■□□□□ 0.76
CCDC88B-210ENST00000494566 TOM1L2Q6ZVM7 507 aa19.79■□□□□ 0.76
CCDC88B-210ENST00000494566 CADPS2Q86UW7 1296 aa19.79■□□□□ 0.76
CCDC88B-210ENST00000494566 SPC24Q8NBT2 197 aa19.79■□□□□ 0.76
CCDC88B-210ENST00000494566 PDRG1Q9NUG6 133 aa19.79■□□□□ 0.76
CCDC88B-210ENST00000494566 HDAC5Q9UQL6 1122 aa19.79■□□□□ 0.76
CCDC88B-210ENST00000494566 VPS37CA5D8V6 355 aaPredicted RBP19.78■□□□□ 0.76
CCDC88B-210ENST00000494566 TTLL7Q6ZT98 887 aa19.78■□□□□ 0.76
CCDC88B-210ENST00000494566 PDLIM2Q96JY6 352 aa19.78■□□□□ 0.76
CCDC88B-210ENST00000494566 PTPN12Q05209 780 aaKnown RBP19.78■□□□□ 0.76
CCDC88B-210ENST00000494566 PRDM11Q9NQV5 511 aa19.78■□□□□ 0.76
CCDC88B-210ENST00000494566 DBNLQ9UJU6 430 aaKnown RBP19.78■□□□□ 0.76
CCDC88B-210ENST00000494566 A1BGP04217 495 aa19.77■□□□□ 0.76
CCDC88B-210ENST00000494566 CREB3L3Q68CJ9 461 aa19.77■□□□□ 0.76
CCDC88B-210ENST00000494566 DNAJC2Q99543 621 aaKnown RBP19.77■□□□□ 0.76
CCDC88B-210ENST00000494566 ZNF330Q9Y3S2 320 aaPredicted RBP19.77■□□□□ 0.76
CCDC88B-210ENST00000494566 NBPF26B4DH59 902 aa19.77■□□□□ 0.76
CCDC88B-210ENST00000494566 SYT1P21579 422 aa19.77■□□□□ 0.76
CCDC88B-210ENST00000494566 NECTIN1Q15223 517 aa19.77■□□□□ 0.76
CCDC88B-210ENST00000494566 NBPF14Q5TI25 921 aa19.77■□□□□ 0.76
CCDC88B-210ENST00000494566 NBPF10Q6P3W6 841 aaKnown RBP19.77■□□□□ 0.76
CCDC88B-210ENST00000494566 NBPF15Q8N660 670 aa19.77■□□□□ 0.76
CCDC88B-210ENST00000494566 SLFNL1Q499Z3 407 aa19.76■□□□□ 0.75
CCDC88B-210ENST00000494566 STRN4Q9NRL3 753 aa19.76■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms