RNA–Protein interactions for RNA: ENST00000494503.1

UBR4-216, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 3

Gene UBR4, Length 598 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-216ENST00000494503 RGL2O15211 777 aa12.68□□□□□ -0.38
UBR4-216ENST00000494503 EIF4A1P60842 406 aaKnown RBP12.68□□□□□ -0.38
UBR4-216ENST00000494503 GRM1Q13255 1194 aa12.68□□□□□ -0.38
UBR4-216ENST00000494503 MAP1SQ66K74 1059 aaPredicted RBP12.68□□□□□ -0.38
UBR4-216ENST00000494503 RBM17Q96I25 401 aaKnown RBP12.68□□□□□ -0.38
UBR4-216ENST00000494503 ABT1Q9ULW3 272 aaKnown RBP12.68□□□□□ -0.38
UBR4-216ENST00000494503 CNTNAP1P78357 1384 aa12.68□□□□□ -0.38
UBR4-216ENST00000494503 KLRG2A4D1S0 409 aaPredicted RBP12.67□□□□□ -0.38
UBR4-216ENST00000494503 ERVV-1B6SEH8 477 aa12.67□□□□□ -0.38
UBR4-216ENST00000494503 PPEF1O14829 653 aaPredicted RBP12.67□□□□□ -0.38
UBR4-216ENST00000494503 SUSD4Q5VX71 490 aa12.67□□□□□ -0.38
UBR4-216ENST00000494503 PNMA8AQ86V59 439 aaPredicted RBP12.67□□□□□ -0.38
UBR4-216ENST00000494503 GPC2Q8N158 579 aa12.67□□□□□ -0.38
UBR4-216ENST00000494503 NECTIN2Q92692 538 aa12.67□□□□□ -0.38
UBR4-216ENST00000494503 UBN2Q6ZU65 1347 aa12.66□□□□□ -0.38
UBR4-216ENST00000494503 PPP1R42Q7Z4L9 355 aa12.66□□□□□ -0.38
UBR4-216ENST00000494503 NIM1KQ8IY84 436 aa12.66□□□□□ -0.38
UBR4-216ENST00000494503 CNTROBQ8N137 903 aa12.66□□□□□ -0.38
UBR4-216ENST00000494503 PSMD1Q99460 953 aa12.66□□□□□ -0.38
UBR4-216ENST00000494503 PASKQ96RG2 1323 aa12.65□□□□□ -0.38
UBR4-216ENST00000494503 FZD9O00144 591 aa12.65□□□□□ -0.38
UBR4-216ENST00000494503 FOXN1O15353 648 aa12.65□□□□□ -0.38
UBR4-216ENST00000494503 PPIP5K2O43314 1243 aa12.65□□□□□ -0.38
UBR4-216ENST00000494503 ANXA1P04083 346 aa12.65□□□□□ -0.38
UBR4-216ENST00000494503 VEGFBP49765 207 aa12.65□□□□□ -0.38
UBR4-216ENST00000494503 RIPK4P57078 832 aa12.65□□□□□ -0.38
UBR4-216ENST00000494503 AIMP1Q12904 312 aaKnown RBP12.65□□□□□ -0.38
UBR4-216ENST00000494503 CRY2Q49AN0 593 aa12.65□□□□□ -0.38
UBR4-216ENST00000494503 CC2D2BQ6DHV5 1058 aa12.65□□□□□ -0.38
UBR4-216ENST00000494503 ZNF428Q96B54 188 aa12.65□□□□□ -0.38
UBR4-216ENST00000494503 NEUROD2Q15784 382 aa12.64□□□□□ -0.39
UBR4-216ENST00000494503 SLC51AQ86UW1 340 aa12.64□□□□□ -0.39
UBR4-216ENST00000494503 NLRP3Q96P20 1036 aa12.64□□□□□ -0.39
UBR4-216ENST00000494503 PLEKHF1Q96S99 279 aa12.64□□□□□ -0.39
UBR4-216ENST00000494503 UTP14AQ9BVJ6 771 aaKnown RBP12.64□□□□□ -0.39
UBR4-216ENST00000494503 LAS1LQ9Y4W2 734 aaKnown RBP12.64□□□□□ -0.39
UBR4-216ENST00000494503 NTSR2O95665 410 aa12.63□□□□□ -0.39
UBR4-216ENST00000494503 ITGBL1O95965 494 aaPredicted RBP12.63□□□□□ -0.39
UBR4-216ENST00000494503 AOC3Q16853 763 aa12.63□□□□□ -0.39
UBR4-216ENST00000494503 DEFB115Q30KQ5 88 aa12.63□□□□□ -0.39
UBR4-216ENST00000494503 PARP10Q53GL7 1025 aa12.63□□□□□ -0.39
UBR4-216ENST00000494503 GIGYF2Q6Y7W6 1299 aaKnown RBP12.63□□□□□ -0.39
UBR4-216ENST00000494503 IBTKQ9P2D0 1353 aaPredicted RBP12.63□□□□□ -0.39
UBR4-216ENST00000494503 ANKRD36CQ5JPF3 1778 aa12.62□□□□□ -0.39
UBR4-216ENST00000494503 ADAMTSL1Q8N6G6 1762 aa12.62□□□□□ -0.39
UBR4-216ENST00000494503 COL4A5P29400 1685 aa12.62□□□□□ -0.39
UBR4-216ENST00000494503 EPS15P42566 896 aa12.62□□□□□ -0.39
UBR4-216ENST00000494503 CTCFP49711 727 aaPredicted RBP12.62□□□□□ -0.39
UBR4-216ENST00000494503 LMOD3Q0VAK6 560 aa12.62□□□□□ -0.39
UBR4-216ENST00000494503 GRIPAP1Q4V328 841 aa12.62□□□□□ -0.39
UBR4-216ENST00000494503 C3orf67Q6ZVT6 689 aa12.62□□□□□ -0.39
UBR4-216ENST00000494503 ZNF34Q8IZ26 560 aa12.62□□□□□ -0.39
UBR4-216ENST00000494503 CRAMP1Q96RY5 1269 aa12.62□□□□□ -0.39
UBR4-216ENST00000494503 ERBB4Q15303 1308 aa12.62□□□□□ -0.39
UBR4-216ENST00000494503 HOXA10P31260 410 aaPredicted RBP12.61□□□□□ -0.39
UBR4-216ENST00000494503 LBX1P52954 281 aa12.61□□□□□ -0.39
UBR4-216ENST00000494503 PROSER3Q2NL68 480 aa12.61□□□□□ -0.39
UBR4-216ENST00000494503 DPP8Q6V1X1 898 aaPredicted RBP12.61□□□□□ -0.39
UBR4-216ENST00000494503 CCDC146Q8IYE0 955 aa12.61□□□□□ -0.39
UBR4-216ENST00000494503 LTBP1Q14766 1721 aa12.61□□□□□ -0.39
UBR4-216ENST00000494503 RIC1Q4ADV7 1423 aa12.61□□□□□ -0.39
UBR4-216ENST00000494503 ABCC4O15439 1325 aa12.61□□□□□ -0.39
UBR4-216ENST00000494503 TRPM7Q96QT4 1865 aa12.6□□□□□ -0.39
UBR4-216ENST00000494503 HCLS1P14317 486 aaPredicted RBP12.6□□□□□ -0.39
UBR4-216ENST00000494503 SCNN1DP51172 638 aa12.6□□□□□ -0.39
UBR4-216ENST00000494503 COPS6Q7L5N1 327 aa12.6□□□□□ -0.39
UBR4-216ENST00000494503 XAGE3Q8WTP9 111 aa12.6□□□□□ -0.39
UBR4-216ENST00000494503 BEGAINQ9BUH8 593 aa12.6□□□□□ -0.39
UBR4-216ENST00000494503 BCL2L13Q9BXK5 485 aa12.6□□□□□ -0.39
UBR4-216ENST00000494503 DDX21Q9NR30 783 aaKnown RBP eCLIP12.6□□□□□ -0.39
UBR4-216ENST00000494503 TRMT112Q9UI30 125 aaKnown RBP12.6□□□□□ -0.39
UBR4-216ENST00000494503 LAMB2P55268 1798 aa12.6□□□□□ -0.39
UBR4-216ENST00000494503 WDR33Q9C0J8 1336 aaKnown RBP12.6□□□□□ -0.39
UBR4-216ENST00000494503 TAF1P21675 1872 aa12.59□□□□□ -0.39
UBR4-216ENST00000494503 TRAF5O00463 557 aa12.59□□□□□ -0.39
UBR4-216ENST00000494503 FMR1Q06787 632 aaKnown RBP eCLIP12.59□□□□□ -0.394e-8■■■□□ 17
UBR4-216ENST00000494503 WDR43Q15061 677 aaKnown RBP eCLIP12.59□□□□□ -0.39
UBR4-216ENST00000494503 HSP90AB3PQ58FF7 597 aa12.59□□□□□ -0.39
UBR4-216ENST00000494503 DDX46Q7L014 1031 aaKnown RBP12.59□□□□□ -0.39
UBR4-216ENST00000494503 SUPT20HQ8NEM7 779 aa12.59□□□□□ -0.39
UBR4-216ENST00000494503 ZNF408Q9H9D4 720 aa12.59□□□□□ -0.39
UBR4-216ENST00000494503 ATP6V0A2Q9Y487 856 aa12.59□□□□□ -0.39
UBR4-216ENST00000494503 SNED1Q8TER0 1413 aa12.59□□□□□ -0.39
UBR4-216ENST00000494503 RASSF10A6NK89 507 aa12.58□□□□□ -0.4
UBR4-216ENST00000494503 TMPOP42166 694 aaKnown RBP12.58□□□□□ -0.4
UBR4-216ENST00000494503 MAP2K1Q02750 393 aaPredicted RBP12.58□□□□□ -0.4
UBR4-216ENST00000494503 USP50Q70EL3 339 aaPredicted RBP12.58□□□□□ -0.4
UBR4-216ENST00000494503 MPNDQ8N594 471 aa12.58□□□□□ -0.4
UBR4-216ENST00000494503 PRDM10Q9NQV6 1147 aa12.58□□□□□ -0.4
UBR4-216ENST00000494503 RAD17O75943 681 aa12.57□□□□□ -0.4
UBR4-216ENST00000494503 ECE1P42892 770 aa12.57□□□□□ -0.4
UBR4-216ENST00000494503 GMPSP49915 693 aaPredicted RBP12.57□□□□□ -0.4
UBR4-216ENST00000494503 PDIA6Q15084 440 aa12.57□□□□□ -0.4
UBR4-216ENST00000494503 RALBP1Q15311 655 aa12.57□□□□□ -0.4
UBR4-216ENST00000494503 KRT24Q2M2I5 525 aa12.57□□□□□ -0.4
UBR4-216ENST00000494503 CYP4F22Q6NT55 531 aa12.57□□□□□ -0.4
UBR4-216ENST00000494503 CAPNS2Q96L46 248 aa12.57□□□□□ -0.4
UBR4-216ENST00000494503 ADARB2Q9NS39 739 aaKnown RBP12.57□□□□□ -0.4
UBR4-216ENST00000494503 WBP1LQ9NX94 342 aa12.57□□□□□ -0.4
UBR4-216ENST00000494503 ZNRF3Q9ULT6 936 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms