RNA–Protein interactions for RNA: ENST00000493618.5

ATG4B-223, Transcript of autophagy related 4B cysteine peptidase, humanhuman

TSL 5

Gene ATG4B, Length 899 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4B-223ENST00000493618 SLC51AQ86UW1 340 aa19.13■□□□□ 0.65
ATG4B-223ENST00000493618 SMC1BQ8NDV3 1235 aa19.13■□□□□ 0.65
ATG4B-223ENST00000493618 RPGRQ92834 1020 aaKnown RBP19.13■□□□□ 0.65
ATG4B-223ENST00000493618 ZNF428Q96B54 188 aa19.13■□□□□ 0.65
ATG4B-223ENST00000493618 TAF1P21675 1872 aa19.13■□□□□ 0.65
ATG4B-223ENST00000493618 RIC1Q4ADV7 1423 aa19.12■□□□□ 0.65
ATG4B-223ENST00000493618 CRY2Q49AN0 593 aa19.12■□□□□ 0.65
ATG4B-223ENST00000493618 PPP1R42Q7Z4L9 355 aa19.12■□□□□ 0.65
ATG4B-223ENST00000493618 APAF1O14727 1248 aa19.11■□□□□ 0.65
ATG4B-223ENST00000493618 TCERG1O14776 1098 aaKnown RBP19.11■□□□□ 0.65
ATG4B-223ENST00000493618 CHPF2Q9P2E5 772 aa19.11■□□□□ 0.65
ATG4B-223ENST00000493618 SCN4AP35499 1836 aa19.1■□□□□ 0.65
ATG4B-223ENST00000493618 PARP10Q53GL7 1025 aa19.1■□□□□ 0.65
ATG4B-223ENST00000493618 RTKN2Q8IZC4 609 aa19.1■□□□□ 0.65
ATG4B-223ENST00000493618 SYNE4Q8N205 404 aa19.1■□□□□ 0.65
ATG4B-223ENST00000493618 DNAJC5GQ8N7S2 189 aa19.1■□□□□ 0.65
ATG4B-223ENST00000493618 UTP14AQ9BVJ6 771 aaKnown RBP19.1■□□□□ 0.65
ATG4B-223ENST00000493618 DDX21Q9NR30 783 aaKnown RBP eCLIP19.1■□□□□ 0.65
ATG4B-223ENST00000493618 DDX60Q8IY21 1712 aaKnown RBP19.09■□□□□ 0.65
ATG4B-223ENST00000493618 ZNF541Q9H0D2 1346 aa19.09■□□□□ 0.65
ATG4B-223ENST00000493618 HDGFL1Q5TGJ6 251 aa19.09■□□□□ 0.65
ATG4B-223ENST00000493618 MBIPQ9NS73 344 aa19.09■□□□□ 0.65
ATG4B-223ENST00000493618 SNED1Q8TER0 1413 aa19.08■□□□□ 0.65
ATG4B-223ENST00000493618 HOXA10P31260 410 aaPredicted RBP19.08■□□□□ 0.64
ATG4B-223ENST00000493618 CCDC184Q52MB2 194 aa19.08■□□□□ 0.64
ATG4B-223ENST00000493618 RBM17Q96I25 401 aaKnown RBP19.08■□□□□ 0.64
ATG4B-223ENST00000493618 CFAP44Q96MT7 982 aa19.08■□□□□ 0.64
ATG4B-223ENST00000493618 PPEF1O14829 653 aaPredicted RBP19.07■□□□□ 0.64
ATG4B-223ENST00000493618 IARSP41252 1262 aaKnown RBP19.07■□□□□ 0.64
ATG4B-223ENST00000493618 DUSP27Q5VZP5 1158 aa19.07■□□□□ 0.64
ATG4B-223ENST00000493618 NLRP10Q86W26 655 aa19.07■□□□□ 0.64
ATG4B-223ENST00000493618 COL4A5P29400 1685 aa19.07■□□□□ 0.64
ATG4B-223ENST00000493618 POTEIP0CG38 1075 aa19.06■□□□□ 0.64
ATG4B-223ENST00000493618 POTEJP0CG39 1038 aa19.06■□□□□ 0.64
ATG4B-223ENST00000493618 TCIRG1Q13488 830 aa19.06■□□□□ 0.64
ATG4B-223ENST00000493618 HSP90AB3PQ58FF7 597 aa19.06■□□□□ 0.64
ATG4B-223ENST00000493618 NLRP3Q96P20 1036 aa19.06■□□□□ 0.64
ATG4B-223ENST00000493618 CRAMP1Q96RY5 1269 aa19.06■□□□□ 0.64
ATG4B-223ENST00000493618 HCLS1P14317 486 aaPredicted RBP19.05■□□□□ 0.64
ATG4B-223ENST00000493618 ELL2O00472 640 aaPredicted RBP19.04■□□□□ 0.64
ATG4B-223ENST00000493618 ZNF853P0CG23 659 aa19.04■□□□□ 0.64
ATG4B-223ENST00000493618 SLC10A5Q5PT55 438 aa19.04■□□□□ 0.64
ATG4B-223ENST00000493618 PSMD1Q99460 953 aa19.04■□□□□ 0.64
ATG4B-223ENST00000493618 TRMT112Q9UI30 125 aaKnown RBP19.04■□□□□ 0.64
ATG4B-223ENST00000493618 ABCC4O15439 1325 aa19.03■□□□□ 0.64
ATG4B-223ENST00000493618 HOXB7P09629 217 aa19.03■□□□□ 0.64
ATG4B-223ENST00000493618 DBF4Q9UBU7 674 aaPredicted RBP19.03■□□□□ 0.64
ATG4B-223ENST00000493618 ATP5J2-PTCD1G3V325 749 aa19.02■□□□□ 0.64
ATG4B-223ENST00000493618 GNAI1P63096 354 aa19.02■□□□□ 0.64
ATG4B-223ENST00000493618 CC2D2BQ6DHV5 1058 aa19.02■□□□□ 0.64
ATG4B-223ENST00000493618 ANKRD13DQ6ZTN6 518 aa19.02■□□□□ 0.64
ATG4B-223ENST00000493618 PLBD2Q8NHP8 589 aa19.02■□□□□ 0.64
ATG4B-223ENST00000493618 KLRG1Q96E93 195 aa19.02■□□□□ 0.64
ATG4B-223ENST00000493618 IFT57Q9NWB7 429 aa19.02■□□□□ 0.64
ATG4B-223ENST00000493618 FZD9O00144 591 aa19.01■□□□□ 0.63
ATG4B-223ENST00000493618 CHADLQ6NUI6 762 aa19.01■□□□□ 0.63
ATG4B-223ENST00000493618 JDP2Q8WYK2 163 aa19.01■□□□□ 0.63
ATG4B-223ENST00000493618 L3MBTL3Q96JM7 780 aaPredicted RBP19.01■□□□□ 0.63
ATG4B-223ENST00000493618 RNF123Q5XPI4 1314 aa19■□□□□ 0.63
ATG4B-223ENST00000493618 SH3TC1Q8TE82 1336 aa19■□□□□ 0.63
ATG4B-223ENST00000493618 LTBP1Q14766 1721 aa19■□□□□ 0.63
ATG4B-223ENST00000493618 IQCA1LA6NCM1 817 aa19■□□□□ 0.63
ATG4B-223ENST00000493618 EAPPQ56P03 285 aaPredicted RBP19■□□□□ 0.63
ATG4B-223ENST00000493618 TAF1DQ9H5J8 278 aaPredicted RBP19■□□□□ 0.63
ATG4B-223ENST00000493618 HYPKQ9NX55 129 aa19■□□□□ 0.63
ATG4B-223ENST00000493618 GJA3Q9Y6H8 435 aa19■□□□□ 0.63
ATG4B-223ENST00000493618 ADAMTSL1Q8N6G6 1762 aa19■□□□□ 0.63
ATG4B-223ENST00000493618 ZEB1P37275 1124 aaPredicted RBP18.99■□□□□ 0.63
ATG4B-223ENST00000493618 CALD1Q05682 793 aaKnown RBP18.99■□□□□ 0.63
ATG4B-223ENST00000493618 RTL5Q5HYW3 569 aaPredicted RBP18.99■□□□□ 0.63
ATG4B-223ENST00000493618 LARGE2Q8N3Y3 721 aa18.99■□□□□ 0.63
ATG4B-223ENST00000493618 C8orf58Q8NAV2 365 aa18.99■□□□□ 0.63
ATG4B-223ENST00000493618 ISCA1Q9BUE6 129 aa18.99■□□□□ 0.63
ATG4B-223ENST00000493618 PHAXQ9H814 394 aaKnown RBP18.99■□□□□ 0.63
ATG4B-223ENST00000493618 ATP6V0A2Q9Y487 856 aa18.99■□□□□ 0.63
ATG4B-223ENST00000493618 COL4A1P02462 1669 aa18.98■□□□□ 0.63
ATG4B-223ENST00000493618 FAM89AQ96GI7 184 aa18.98■□□□□ 0.63
ATG4B-223ENST00000493618 TMX4Q9H1E5 349 aaPredicted RBP18.98■□□□□ 0.63
ATG4B-223ENST00000493618 HACL1Q9UJ83 578 aa18.98■□□□□ 0.63
ATG4B-223ENST00000493618 LRRC37AA6NMS7 1700 aa18.97■□□□□ 0.63
ATG4B-223ENST00000493618 EIF6P56537 245 aaKnown RBP18.97■□□□□ 0.63
ATG4B-223ENST00000493618 AOC3Q16853 763 aa18.97■□□□□ 0.63
ATG4B-223ENST00000493618 DDX46Q7L014 1031 aaKnown RBP18.97■□□□□ 0.63
ATG4B-223ENST00000493618 CLEC11AQ9Y240 323 aa18.97■□□□□ 0.63
ATG4B-223ENST00000493618 PPIP5K2O43314 1243 aa18.96■□□□□ 0.63
ATG4B-223ENST00000493618 EPHX2P34913 555 aa18.96■□□□□ 0.63
ATG4B-223ENST00000493618 GRIPAP1Q4V328 841 aa18.96■□□□□ 0.63
ATG4B-223ENST00000493618 RIC3Q7Z5B4 369 aa18.96■□□□□ 0.63
ATG4B-223ENST00000493618 LDHDQ86WU2 507 aa18.96■□□□□ 0.63
ATG4B-223ENST00000493618 GPC2Q8N158 579 aa18.96■□□□□ 0.63
ATG4B-223ENST00000493618 TSR2Q969E8 191 aaKnown RBP18.96■□□□□ 0.63
ATG4B-223ENST00000493618 GOLGA2Q08379 1002 aa18.95■□□□□ 0.62
ATG4B-223ENST00000493618 GRAPQ13588 217 aa18.95■□□□□ 0.62
ATG4B-223ENST00000493618 NIM1KQ8IY84 436 aa18.95■□□□□ 0.62
ATG4B-223ENST00000493618 TSPYL6Q8N831 410 aa18.95■□□□□ 0.62
ATG4B-223ENST00000493618 GRAPLQ8TC17 118 aaPredicted RBP18.95■□□□□ 0.62
ATG4B-223ENST00000493618 ZNF316A6NFI3 1004 aaPredicted RBP18.94■□□□□ 0.62
ATG4B-223ENST00000493618 BBOX1O75936 387 aa18.94■□□□□ 0.62
ATG4B-223ENST00000493618 DPP8Q6V1X1 898 aaPredicted RBP18.94■□□□□ 0.62
ATG4B-223ENST00000493618 SP8Q8IXZ3 490 aa18.94■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 116.3 ms