RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 CREBZFQ9NS37 354 aa15.18■□□□□ 0.02
COL6A3-213ENST00000493475 ARFGEF2Q9Y6D5 1785 aa15.18■□□□□ 0.02
COL6A3-213ENST00000493475 IARSP41252 1262 aaKnown RBP15.17■□□□□ 0.02
COL6A3-213ENST00000493475 EIF6P56537 245 aaKnown RBP15.17■□□□□ 0.02
COL6A3-213ENST00000493475 HLFQ16534 295 aa15.17■□□□□ 0.02
COL6A3-213ENST00000493475 HSP90AB3PQ58FF7 597 aa15.17■□□□□ 0.02
COL6A3-213ENST00000493475 C7orf43Q8WVR3 580 aa15.17■□□□□ 0.02
COL6A3-213ENST00000493475 PLEKHF1Q96S99 279 aa15.17■□□□□ 0.02
COL6A3-213ENST00000493475 PSMD1Q99460 953 aa15.17■□□□□ 0.02
COL6A3-213ENST00000493475 ZNF277Q9NRM2 450 aaPredicted RBP15.17■□□□□ 0.02
COL6A3-213ENST00000493475 HACL1Q9UJ83 578 aa15.17■□□□□ 0.02
COL6A3-213ENST00000493475 DICER1Q9UPY3 1922 aaKnown RBP15.16■□□□□ 0.02
COL6A3-213ENST00000493475 LMOD1P29536 600 aaPredicted RBP15.16■□□□□ 0.02
COL6A3-213ENST00000493475 RIPK4P57078 832 aa15.16■□□□□ 0.02
COL6A3-213ENST00000493475 CRY2Q49AN0 593 aa15.16■□□□□ 0.02
COL6A3-213ENST00000493475 ZBTB3Q9H5J0 574 aa15.16■□□□□ 0.02
COL6A3-213ENST00000493475 CLEC11AQ9Y240 323 aa15.16■□□□□ 0.02
COL6A3-213ENST00000493475 CCDC88AQ3V6T2 1871 aa15.16■□□□□ 0.02
COL6A3-213ENST00000493475 RNF123Q5XPI4 1314 aa15.16■□□□□ 0.02
COL6A3-213ENST00000493475 SLX4Q8IY92 1834 aa15.15■□□□□ 0.02
COL6A3-213ENST00000493475 POTECB2RU33 542 aa15.15■□□□□ 0.02
COL6A3-213ENST00000493475 WDR43Q15061 677 aaKnown RBP eCLIP15.15■□□□□ 0.02
COL6A3-213ENST00000493475 EAPPQ56P03 285 aaPredicted RBP15.15■□□□□ 0.02
COL6A3-213ENST00000493475 GIGYF2Q6Y7W6 1299 aaKnown RBP15.15■□□□□ 0.02
COL6A3-213ENST00000493475 GPC2Q8N158 579 aa15.15■□□□□ 0.02
COL6A3-213ENST00000493475 SYNE4Q8N205 404 aa15.15■□□□□ 0.02
COL6A3-213ENST00000493475 NLRP3Q96P20 1036 aa15.15■□□□□ 0.02
COL6A3-213ENST00000493475 TAF1DQ9H5J8 278 aaPredicted RBP15.15■□□□□ 0.02
COL6A3-213ENST00000493475 RIC1Q4ADV7 1423 aa15.15■□□□□ 0.02
COL6A3-213ENST00000493475 GPTP24298 496 aa15.14■□□□□ 0.01
COL6A3-213ENST00000493475 NUTM1Q86Y26 1132 aa15.14■□□□□ 0.01
COL6A3-213ENST00000493475 CRAMP1Q96RY5 1269 aa15.14■□□□□ 0.01
COL6A3-213ENST00000493475 PPEF1O14829 653 aaPredicted RBP15.13■□□□□ 0.01
COL6A3-213ENST00000493475 EIF2S2P20042 333 aaKnown RBP15.13■□□□□ 0.01
COL6A3-213ENST00000493475 HOXA10P31260 410 aaPredicted RBP15.13■□□□□ 0.01
COL6A3-213ENST00000493475 EPHX2P34913 555 aa15.13■□□□□ 0.01
COL6A3-213ENST00000493475 EVX2Q03828 476 aa15.13■□□□□ 0.01
COL6A3-213ENST00000493475 CACNA1SQ13698 1873 aa15.13■□□□□ 0.01
COL6A3-213ENST00000493475 TTLL7Q6ZT98 887 aa15.13■□□□□ 0.01
COL6A3-213ENST00000493475 TNS4Q8IZW8 715 aa15.13■□□□□ 0.01
COL6A3-213ENST00000493475 SUPT20HQ8NEM7 779 aa15.13■□□□□ 0.01
COL6A3-213ENST00000493475 THUMPD2Q9BTF0 503 aaKnown RBP15.13■□□□□ 0.01
COL6A3-213ENST00000493475 UTP14AQ9BVJ6 771 aaKnown RBP15.13■□□□□ 0.01
COL6A3-213ENST00000493475 KDM3BQ7LBC6 1761 aa15.13■□□□□ 0.01
COL6A3-213ENST00000493475 HSPA1AP0DMV8 641 aaKnown RBP15.12■□□□□ 0.01
COL6A3-213ENST00000493475 HSPA1BP0DMV9 641 aaKnown RBP15.12■□□□□ 0.01
COL6A3-213ENST00000493475 LARGE2Q8N3Y3 721 aa15.12■□□□□ 0.01
COL6A3-213ENST00000493475 AIDAQ96BJ3 306 aa15.12■□□□□ 0.01
COL6A3-213ENST00000493475 VPS33BQ9H267 617 aa15.12■□□□□ 0.01
COL6A3-213ENST00000493475 SCN4AP35499 1836 aa15.12■□□□□ 0.01
COL6A3-213ENST00000493475 ABCC12Q96J65 1359 aa15.11■□□□□ 0.01
COL6A3-213ENST00000493475 TMEM88BA6NKF7 163 aa15.11■□□□□ 0.01
COL6A3-213ENST00000493475 FZD9O00144 591 aa15.11■□□□□ 0.01
COL6A3-213ENST00000493475 SUSD4Q5VX71 490 aa15.11■□□□□ 0.01
COL6A3-213ENST00000493475 NIM1KQ8IY84 436 aa15.11■□□□□ 0.01
COL6A3-213ENST00000493475 ZNF34Q8IZ26 560 aa15.11■□□□□ 0.01
COL6A3-213ENST00000493475 MYBBP1AQ9BQG0 1328 aaKnown RBP15.11■□□□□ 0.01
COL6A3-213ENST00000493475 TMPOP42166 694 aaKnown RBP15.1■□□□□ 0.01
COL6A3-213ENST00000493475 MKRN1Q9UHC7 482 aaKnown RBP15.1■□□□□ 0.01
COL6A3-213ENST00000493475 GJA3Q9Y6H8 435 aa15.1■□□□□ 0.01
COL6A3-213ENST00000493475 ZNF541Q9H0D2 1346 aa15.1■□□□□ 0.01
COL6A3-213ENST00000493475 NTSR2O95665 410 aa15.09■□□□□ 0.01
COL6A3-213ENST00000493475 CHMP4AQ9BY43 222 aa15.09■□□□□ 0.01
COL6A3-213ENST00000493475 UBN2Q6ZU65 1347 aa15.09■□□□□ 0.01
COL6A3-213ENST00000493475 DLG5Q8TDM6 1919 aa15.09■□□□□ 0.01
COL6A3-213ENST00000493475 PPIP5K2O43314 1243 aa15.08■□□□□ 0
COL6A3-213ENST00000493475 BBOX1O75936 387 aa15.08■□□□□ 0
COL6A3-213ENST00000493475 COL13A1Q5TAT6 717 aaPredicted RBP15.08■□□□□ 0
COL6A3-213ENST00000493475 OLFM4Q6UX06 510 aa15.08■□□□□ 0
COL6A3-213ENST00000493475 DDX46Q7L014 1031 aaKnown RBP15.08■□□□□ 0
COL6A3-213ENST00000493475 TMC4Q7Z404 712 aa15.08■□□□□ 0
COL6A3-213ENST00000493475 RUNDC1Q96C34 613 aa15.08■□□□□ 0
COL6A3-213ENST00000493475 HOXB7P09629 217 aa15.07■□□□□ 0
COL6A3-213ENST00000493475 POTEIP0CG38 1075 aa15.07■□□□□ 0
COL6A3-213ENST00000493475 POTEJP0CG39 1038 aa15.07■□□□□ 0
COL6A3-213ENST00000493475 HSP90B1P14625 803 aaKnown RBP15.07■□□□□ 0
COL6A3-213ENST00000493475 CALD1Q05682 793 aaKnown RBP15.07■□□□□ 0
COL6A3-213ENST00000493475 AIMP1Q12904 312 aaKnown RBP15.07■□□□□ 0
COL6A3-213ENST00000493475 NEUROD2Q15784 382 aa15.07■□□□□ 0
COL6A3-213ENST00000493475 CNTROBQ8N137 903 aa15.07■□□□□ 0
COL6A3-213ENST00000493475 DDX21Q9NR30 783 aaKnown RBP eCLIP15.07■□□□□ 0
COL6A3-213ENST00000493475 TRMT112Q9UI30 125 aaKnown RBP15.07■□□□□ 0
COL6A3-213ENST00000493475 ATP6V0A2Q9Y487 856 aa15.07■□□□□ 0
COL6A3-213ENST00000493475 LAS1LQ9Y4W2 734 aaKnown RBP15.07■□□□□ 0
COL6A3-213ENST00000493475 PASKQ96RG2 1323 aa15.07■□□□□ 0
COL6A3-213ENST00000493475 CNTNAP1P78357 1384 aa15.07■□□□□ 0
COL6A3-213ENST00000493475 NUP98P52948 1817 aa15.06■□□□□ 0
COL6A3-213ENST00000493475 TCERG1O14776 1098 aaKnown RBP15.06■□□□□ 0
COL6A3-213ENST00000493475 SLC10A5Q5PT55 438 aa15.06■□□□□ 0
COL6A3-213ENST00000493475 DPP8Q6V1X1 898 aaPredicted RBP15.06■□□□□ 0
COL6A3-213ENST00000493475 COPS6Q7L5N1 327 aa15.06■□□□□ 0
COL6A3-213ENST00000493475 SH3TC1Q8TE82 1336 aa15.06■□□□□ 0
COL6A3-213ENST00000493475 PCNTO95613 3336 aa15.06■□□□□ 0
COL6A3-213ENST00000493475 HDGFL1Q5TGJ6 251 aa15.05■□□□□ -0
COL6A3-213ENST00000493475 USP50Q70EL3 339 aaPredicted RBP15.05■□□□□ -0
COL6A3-213ENST00000493475 XAGE3Q8WTP9 111 aa15.05■□□□□ -0
COL6A3-213ENST00000493475 DBF4Q9UBU7 674 aaPredicted RBP15.05■□□□□ -0
COL6A3-213ENST00000493475 ABT1Q9ULW3 272 aaKnown RBP15.05■□□□□ -0
COL6A3-213ENST00000493475 DDX10Q13206 875 aaKnown RBP15.04■□□□□ -0
COL6A3-213ENST00000493475 TCIRG1Q13488 830 aa15.04■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms