RNA–Protein interactions for RNA: ENST00000482399.5

VPS52-218, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2 BASIC

Gene VPS52, Length 3,338 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-218ENST00000482399 CCDC171Q6TFL3 1326 aa15□□□□□ -0.01
VPS52-218ENST00000482399 VPS53Q5VIR6 699 aa15□□□□□ -0.01
VPS52-218ENST00000482399 COL9A3Q14050 684 aaPredicted RBP14.99□□□□□ -0.01
VPS52-218ENST00000482399 CCAR2Q8N163 923 aaKnown RBP14.99□□□□□ -0.01
VPS52-218ENST00000482399 EVI5LQ96CN4 794 aa14.99□□□□□ -0.01
VPS52-218ENST00000482399 FTOQ9C0B1 505 aaKnown RBP eCLIP14.99□□□□□ -0.01
VPS52-218ENST00000482399 NEXNQ0ZGT2 675 aa14.99□□□□□ -0.01
VPS52-218ENST00000482399 DDX46Q7L014 1031 aaKnown RBP14.99□□□□□ -0.01
VPS52-218ENST00000482399 TLR7Q9NYK1 1049 aaKnown RBP14.99□□□□□ -0.01
VPS52-218ENST00000482399 PTPN14Q15678 1187 aa14.99□□□□□ -0.01
VPS52-218ENST00000482399 AATKQ6ZMQ8 1374 aa14.98□□□□□ -0.01
VPS52-218ENST00000482399 CDK12Q9NYV4 1490 aaPredicted RBP14.98□□□□□ -0.01
VPS52-218ENST00000482399 A0A0D9SFI3 127 aa14.98□□□□□ -0.01
VPS52-218ENST00000482399 PRAMEF22A3QJZ6 481 aa14.98□□□□□ -0.01
VPS52-218ENST00000482399 PSME1Q06323 249 aa14.98□□□□□ -0.01
VPS52-218ENST00000482399 GNL2Q13823 731 aaKnown RBP14.98□□□□□ -0.01
VPS52-218ENST00000482399 MRVI1Q9Y6F6 885 aa14.98□□□□□ -0.01
VPS52-218ENST00000482399 TAF6LQ9Y6J9 622 aa14.98□□□□□ -0.01
VPS52-218ENST00000482399 MYO3AQ8NEV4 1616 aa14.98□□□□□ -0.01
VPS52-218ENST00000482399 CPS1P31327 1500 aa14.98□□□□□ -0.01
VPS52-218ENST00000482399 SLC27A2O14975 620 aa14.98□□□□□ -0.01
VPS52-218ENST00000482399 SLC39A6Q13433 755 aa14.98□□□□□ -0.01
VPS52-218ENST00000482399 TTC14Q96N46 770 aa14.98□□□□□ -0.01
VPS52-218ENST00000482399 TMX1Q9H3N1 280 aa14.98□□□□□ -0.01
VPS52-218ENST00000482399 SKILP12757 684 aa14.97□□□□□ -0.01
VPS52-218ENST00000482399 CEP135Q66GS9 1140 aa14.97□□□□□ -0.01
VPS52-218ENST00000482399 CHGBP05060 677 aa14.97□□□□□ -0.01
VPS52-218ENST00000482399 PROSER3Q2NL68 480 aa14.97□□□□□ -0.01
VPS52-218ENST00000482399 LEO1Q8WVC0 666 aaPredicted RBP14.97□□□□□ -0.01
VPS52-218ENST00000482399 MAP2P11137 1827 aaKnown RBP14.97□□□□□ -0.01
VPS52-218ENST00000482399 EAF2Q96CJ1 260 aaPredicted RBP14.97□□□□□ -0.01
VPS52-218ENST00000482399 PRDM4Q9UKN5 801 aa14.97□□□□□ -0.01
VPS52-218ENST00000482399 FLT4P35916 1363 aa14.97□□□□□ -0.01
VPS52-218ENST00000482399 MLH3Q9UHC1 1453 aa14.97□□□□□ -0.01
VPS52-218ENST00000482399 NRDCO43847 1150 aa14.96□□□□□ -0.01
VPS52-218ENST00000482399 ANKRD1Q15327 319 aa14.96□□□□□ -0.01
VPS52-218ENST00000482399 Q6ZUG5 572 aa14.96□□□□□ -0.01
VPS52-218ENST00000482399 ERC1Q8IUD2 1116 aa14.96□□□□□ -0.01
VPS52-218ENST00000482399 CCAR1Q8IX12 1150 aaKnown RBP14.96□□□□□ -0.01
VPS52-218ENST00000482399 SEC62Q99442 399 aaKnown RBP14.96□□□□□ -0.01
VPS52-218ENST00000482399 DDX19AQ9NUU7 478 aaKnown RBP14.96□□□□□ -0.01
VPS52-218ENST00000482399 PPLO60437 1756 aa14.96□□□□□ -0.01
VPS52-218ENST00000482399 ARHGEF28Q8N1W1 1705 aaKnown RBP14.96□□□□□ -0.01
VPS52-218ENST00000482399 ATP5J2-PTCD1G3V325 749 aa14.96□□□□□ -0.01
VPS52-218ENST00000482399 PTCD1O75127 700 aaKnown RBP14.96□□□□□ -0.01
VPS52-218ENST00000482399 POLR3DP05423 398 aaPredicted RBP14.96□□□□□ -0.01
VPS52-218ENST00000482399 HOXC9P31274 260 aa14.96□□□□□ -0.01
VPS52-218ENST00000482399 HSP90AA4PQ58FG1 418 aa14.96□□□□□ -0.01
VPS52-218ENST00000482399 CCDC85AQ96PX6 553 aaPredicted RBP14.96□□□□□ -0.01
VPS52-218ENST00000482399 BICC1Q9H694 974 aaKnown RBP14.96□□□□□ -0.01
VPS52-218ENST00000482399 DDX58O95786 925 aaKnown RBP14.95□□□□□ -0.02
VPS52-218ENST00000482399 CACTINQ8WUQ7 758 aaKnown RBP14.95□□□□□ -0.02
VPS52-218ENST00000482399 NCOA5Q9HCD5 579 aaKnown RBP14.95□□□□□ -0.02
VPS52-218ENST00000482399 DBF4Q9UBU7 674 aaPredicted RBP14.95□□□□□ -0.02
VPS52-218ENST00000482399 ATP7BP35670 1465 aa14.95□□□□□ -0.02
VPS52-218ENST00000482399 CPSF1Q10570 1443 aaKnown RBP14.95□□□□□ -0.02
VPS52-218ENST00000482399 CSB-PGBD3P0DP91 1061 aa14.95□□□□□ -0.02
VPS52-218ENST00000482399 ZNF75DP51815 510 aa14.95□□□□□ -0.02
VPS52-218ENST00000482399 ZSCAN25Q6NSZ9 544 aa14.95□□□□□ -0.02
VPS52-218ENST00000482399 NPHP3Q7Z494 1330 aa14.95□□□□□ -0.02
VPS52-218ENST00000482399 FSIP1Q8NA03 581 aa14.95□□□□□ -0.02
VPS52-218ENST00000482399 MYD88Q99836 296 aa14.95□□□□□ -0.02
VPS52-218ENST00000482399 ESCO1Q5FWF5 840 aa14.94□□□□□ -0.02
VPS52-218ENST00000482399 OTUD7BQ6GQQ9 843 aa14.94□□□□□ -0.02
VPS52-218ENST00000482399 NEK1Q96PY6 1258 aa14.94□□□□□ -0.02
VPS52-218ENST00000482399 ZSWIM6Q9HCJ5 1215 aa14.94□□□□□ -0.02
VPS52-218ENST00000482399 HDAC5Q9UQL6 1122 aa14.94□□□□□ -0.02
VPS52-218ENST00000482399 ROBO2Q9HCK4 1378 aa14.94□□□□□ -0.02
VPS52-218ENST00000482399 SALL3Q9BXA9 1300 aa14.94□□□□□ -0.02
VPS52-218ENST00000482399 LMTK2Q8IWU2 1503 aa14.94□□□□□ -0.02
VPS52-218ENST00000482399 ARAP3Q8WWN8 1544 aa14.94□□□□□ -0.02
VPS52-218ENST00000482399 ZNF589Q86UQ0 364 aaPredicted RBP14.94□□□□□ -0.02
VPS52-218ENST00000482399 AOPEPQ8N6M6 819 aa14.94□□□□□ -0.02
VPS52-218ENST00000482399 ALKQ9UM73 1620 aa14.94□□□□□ -0.02
VPS52-218ENST00000482399 ZSCAN20P17040 1043 aaPredicted RBP14.94□□□□□ -0.02
VPS52-218ENST00000482399 DMTNQ08495 405 aa14.94□□□□□ -0.02
VPS52-218ENST00000482399 SLFNL1Q499Z3 407 aa14.94□□□□□ -0.02
VPS52-218ENST00000482399 BEND3Q5T5X7 828 aa14.94□□□□□ -0.02
VPS52-218ENST00000482399 HIP1O00291 1037 aa14.93□□□□□ -0.02
VPS52-218ENST00000482399 HAND2P61296 217 aa14.93□□□□□ -0.02
VPS52-218ENST00000482399 SUCLG2Q96I99 432 aa14.93□□□□□ -0.02
VPS52-218ENST00000482399 CFAP45Q9UL16 551 aa14.93□□□□□ -0.02
VPS52-218ENST00000482399 MAP3K5Q99683 1374 aa14.93□□□□□ -0.02
VPS52-218ENST00000482399 CCDC69A6NI79 296 aa14.93□□□□□ -0.02
VPS52-218ENST00000482399 CRB1P82279 1406 aa14.93□□□□□ -0.02
VPS52-218ENST00000482399 STK38Q15208 465 aa14.93□□□□□ -0.02
VPS52-218ENST00000482399 WASHC4Q2M389 1173 aa14.93□□□□□ -0.02
VPS52-218ENST00000482399 SSH2Q76I76 1423 aa14.92□□□□□ -0.02
VPS52-218ENST00000482399 A0A0G2JS52 829 aa14.92□□□□□ -0.02
VPS52-218ENST00000482399 CPLX1O14810 134 aa14.92□□□□□ -0.02
VPS52-218ENST00000482399 APOBRQ0VD83 1088 aa14.92□□□□□ -0.02
VPS52-218ENST00000482399 CREBRFQ8IUR6 639 aa14.92□□□□□ -0.02
VPS52-218ENST00000482399 LTKP29376 864 aa14.92□□□□□ -0.02
VPS52-218ENST00000482399 PDE4CQ08493 712 aa14.92□□□□□ -0.02
VPS52-218ENST00000482399 PTPN21Q16825 1174 aa14.92□□□□□ -0.02
VPS52-218ENST00000482399 TTC41PQ6P2S7 1318 aa14.92□□□□□ -0.02
VPS52-218ENST00000482399 GRM8O00222 908 aa14.92□□□□□ -0.02
VPS52-218ENST00000482399 EIF4A1P60842 406 aaKnown RBP14.92□□□□□ -0.02
VPS52-218ENST00000482399 NBPF6Q5VWK0 638 aa14.92□□□□□ -0.02
VPS52-218ENST00000482399 UBE3BQ7Z3V4 1068 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms