RNA–Protein interactions for RNA: ENST00000480468.1

SIK3-210, Transcript of SIK family kinase 3, humanhuman

TSL 1 (best)

Gene SIK3, Length 2,237 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIK3-210ENST00000480468 NEK11Q8NG66 645 aa12.51□□□□□ -0.41
SIK3-210ENST00000480468 CHMP4AQ9BY43 222 aa12.51□□□□□ -0.41
SIK3-210ENST00000480468 TRMT1Q9NXH9 659 aaKnown RBP12.51□□□□□ -0.41
SIK3-210ENST00000480468 ORC3Q9UBD5 711 aaPredicted RBP12.51□□□□□ -0.41
SIK3-210ENST00000480468 CHMP3Q9Y3E7 222 aa12.51□□□□□ -0.41
SIK3-210ENST00000480468 ITSN1Q15811 1721 aa12.51□□□□□ -0.41
SIK3-210ENST00000480468 NRKQ7Z2Y5 1582 aa12.51□□□□□ -0.41
SIK3-210ENST00000480468 MYO1CO00159 1063 aa12.5□□□□□ -0.41
SIK3-210ENST00000480468 NR1I2O75469 434 aa12.5□□□□□ -0.41
SIK3-210ENST00000480468 CASQ1P31415 396 aa12.5□□□□□ -0.41
SIK3-210ENST00000480468 ME3Q16798 604 aa12.5□□□□□ -0.41
SIK3-210ENST00000480468 KRBA2Q6ZNG9 492 aa12.5□□□□□ -0.41
SIK3-210ENST00000480468 LARP6Q9BRS8 491 aaKnown RBP12.5□□□□□ -0.41
SIK3-210ENST00000480468 LRRFIP2Q9Y608 721 aaKnown RBP12.5□□□□□ -0.41
SIK3-210ENST00000480468 ZSCAN26Q16670 478 aa12.5□□□□□ -0.41
SIK3-210ENST00000480468 SLC4A10Q6U841 1118 aa12.5□□□□□ -0.41
SIK3-210ENST00000480468 CCDC150Q8NCX0 1101 aa12.5□□□□□ -0.41
SIK3-210ENST00000480468 GOLGA5Q8TBA6 731 aa12.5□□□□□ -0.41
SIK3-210ENST00000480468 RUFY2Q8WXA3 655 aa12.5□□□□□ -0.41
SIK3-210ENST00000480468 PPP1R13BQ96KQ4 1090 aa12.5□□□□□ -0.41
SIK3-210ENST00000480468 CDK19Q9BWU1 502 aa12.5□□□□□ -0.41
SIK3-210ENST00000480468 ATG3Q9NT62 314 aa12.5□□□□□ -0.41
SIK3-210ENST00000480468 PHLPP2Q6ZVD8 1323 aa12.49□□□□□ -0.41
SIK3-210ENST00000480468 EDC4Q6P2E9 1401 aaKnown RBP12.49□□□□□ -0.41
SIK3-210ENST00000480468 CCP110O43303 1012 aa12.49□□□□□ -0.41
SIK3-210ENST00000480468 DHX16O60231 1041 aaKnown RBP12.49□□□□□ -0.41
SIK3-210ENST00000480468 E4F1Q66K89 784 aaPredicted RBP12.49□□□□□ -0.41
SIK3-210ENST00000480468 UBXN4Q92575 508 aa12.49□□□□□ -0.41
SIK3-210ENST00000480468 JAKMIP1Q96N16 626 aaKnown RBP12.49□□□□□ -0.41
SIK3-210ENST00000480468 PRAM1Q96QH2 718 aa12.49□□□□□ -0.41
SIK3-210ENST00000480468 USP16Q9Y5T5 823 aa12.49□□□□□ -0.41
SIK3-210ENST00000480468 CFAP65Q6ZU64 1925 aaKnown RBP12.49□□□□□ -0.41
SIK3-210ENST00000480468 CRB1P82279 1406 aa12.49□□□□□ -0.41
SIK3-210ENST00000480468 USP42Q9H9J4 1324 aaKnown RBP12.49□□□□□ -0.41
SIK3-210ENST00000480468 ERCC6L2Q5T890 1561 aa12.49□□□□□ -0.41
SIK3-210ENST00000480468 PXDNLA1KZ92 1463 aa12.49□□□□□ -0.41
SIK3-210ENST00000480468 FBLN1P23142 703 aa12.49□□□□□ -0.41
SIK3-210ENST00000480468 BICD2Q8TD16 824 aa12.49□□□□□ -0.41
SIK3-210ENST00000480468 SSH3Q8TE77 659 aa12.49□□□□□ -0.41
SIK3-210ENST00000480468 SMARCE1Q969G3 411 aa12.49□□□□□ -0.41
SIK3-210ENST00000480468 EXOC4Q96A65 974 aa12.49□□□□□ -0.41
SIK3-210ENST00000480468 PGBD1Q96JS3 809 aa12.49□□□□□ -0.41
SIK3-210ENST00000480468 ALDH8A1Q9H2A2 487 aaPredicted RBP12.49□□□□□ -0.41
SIK3-210ENST00000480468 XRN1Q8IZH2 1706 aaKnown RBP12.49□□□□□ -0.41
SIK3-210ENST00000480468 MAP3K5Q99683 1374 aa12.48□□□□□ -0.41
SIK3-210ENST00000480468 BECN2A8MW95 431 aa12.48□□□□□ -0.41
SIK3-210ENST00000480468 F6X3S4 739 aa12.48□□□□□ -0.41
SIK3-210ENST00000480468 CPA1P15085 419 aa12.48□□□□□ -0.41
SIK3-210ENST00000480468 CCDC158Q5M9N0 1113 aa12.48□□□□□ -0.41
SIK3-210ENST00000480468 C11orf57Q6ZUT1 292 aaPredicted RBP12.48□□□□□ -0.41
SIK3-210ENST00000480468 G2E3Q7L622 706 aa12.48□□□□□ -0.41
SIK3-210ENST00000480468 FERMT3Q86UX7 667 aa12.48□□□□□ -0.41
SIK3-210ENST00000480468 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.48□□□□□ -0.41
SIK3-210ENST00000480468 FBXO18Q8NFZ0 1043 aa12.48□□□□□ -0.41
SIK3-210ENST00000480468 AK7Q96M32 723 aa12.48□□□□□ -0.41
SIK3-210ENST00000480468 BRMS1Q9HCU9 246 aa12.48□□□□□ -0.41
SIK3-210ENST00000480468 DLC1Q96QB1 1528 aa12.48□□□□□ -0.41
SIK3-210ENST00000480468 EFCAB8A8MWE9 144 aa12.47□□□□□ -0.41
SIK3-210ENST00000480468 NPHP1O15259 732 aa12.47□□□□□ -0.41
SIK3-210ENST00000480468 NRDCO43847 1150 aa12.47□□□□□ -0.41
SIK3-210ENST00000480468 TADA3O75528 432 aa12.47□□□□□ -0.41
SIK3-210ENST00000480468 PAXIP1Q6ZW49 1069 aaPredicted RBP12.47□□□□□ -0.41
SIK3-210ENST00000480468 CCDC191Q8NCU4 936 aa12.47□□□□□ -0.41
SIK3-210ENST00000480468 ANO10Q9NW15 660 aa12.47□□□□□ -0.41
SIK3-210ENST00000480468 STK26Q9P289 416 aa12.47□□□□□ -0.41
SIK3-210ENST00000480468 POGZQ7Z3K3 1410 aa12.47□□□□□ -0.41
SIK3-210ENST00000480468 ETF1P62495 437 aaKnown RBP12.47□□□□□ -0.41
SIK3-210ENST00000480468 ANKRD1Q15327 319 aa12.47□□□□□ -0.41
SIK3-210ENST00000480468 ICE2Q659A1 982 aa12.47□□□□□ -0.41
SIK3-210ENST00000480468 SRLQ86TD4 932 aa12.47□□□□□ -0.41
SIK3-210ENST00000480468 DHX40Q8IX18 779 aaKnown RBP12.47□□□□□ -0.41
SIK3-210ENST00000480468 GOLGA6L1Q8N7Z2 621 aa12.47□□□□□ -0.41
SIK3-210ENST00000480468 LRRN4CLQ8ND94 238 aa12.47□□□□□ -0.41
SIK3-210ENST00000480468 SIGLEC1Q9BZZ2 1709 aa12.47□□□□□ -0.41
SIK3-210ENST00000480468 TPCN1Q9ULQ1 816 aa12.47□□□□□ -0.41
SIK3-210ENST00000480468 ADCY9O60503 1353 aa12.47□□□□□ -0.41
SIK3-210ENST00000480468 POLR3GO15318 223 aaPredicted RBP12.46□□□□□ -0.41
SIK3-210ENST00000480468 ZKSCAN1P17029 563 aaPredicted RBP12.46□□□□□ -0.41
SIK3-210ENST00000480468 ST5P78524 1137 aa12.46□□□□□ -0.41
SIK3-210ENST00000480468 ADCK5Q3MIX3 580 aa12.46□□□□□ -0.41
SIK3-210ENST00000480468 FAM173BQ6P4H8 233 aa12.46□□□□□ -0.41
SIK3-210ENST00000480468 NECAB1Q8N987 351 aa12.46□□□□□ -0.41
SIK3-210ENST00000480468 CHD1O14646 1710 aa12.46□□□□□ -0.41
SIK3-210ENST00000480468 TBC1D8O95759 1140 aa12.46□□□□□ -0.42
SIK3-210ENST00000480468 OAS2P29728 719 aaKnown RBP12.46□□□□□ -0.42
SIK3-210ENST00000480468 NECTIN1Q15223 517 aa12.46□□□□□ -0.42
SIK3-210ENST00000480468 NUTM1Q86Y26 1132 aa12.46□□□□□ -0.42
SIK3-210ENST00000480468 TFIP11Q9UBB9 837 aaKnown RBP12.46□□□□□ -0.42
SIK3-210ENST00000480468 DNAI1Q9UI46 699 aa12.46□□□□□ -0.42
SIK3-210ENST00000480468 SPG7Q9UQ90 795 aa12.46□□□□□ -0.42
SIK3-210ENST00000480468 TTC41PQ6P2S7 1318 aa12.46□□□□□ -0.42
SIK3-210ENST00000480468 PSMA5P28066 241 aa12.45□□□□□ -0.42
SIK3-210ENST00000480468 MMP14P50281 582 aa12.45□□□□□ -0.42
SIK3-210ENST00000480468 POLA2Q14181 598 aa12.45□□□□□ -0.42
SIK3-210ENST00000480468 SMC1AQ14683 1233 aaKnown RBP12.45□□□□□ -0.42
SIK3-210ENST00000480468 LRRFIP1Q32MZ4 808 aaKnown RBP12.45□□□□□ -0.42
SIK3-210ENST00000480468 PRPF40BQ6NWY9 871 aaKnown RBP12.45□□□□□ -0.42
SIK3-210ENST00000480468 CWC27Q6UX04 472 aaKnown RBP12.45□□□□□ -0.42
SIK3-210ENST00000480468 NBPF11Q86T75 865 aa12.45□□□□□ -0.42
SIK3-210ENST00000480468 CEP57L1Q8IYX8 460 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms