RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 SETQ01105 290 aaPredicted RBP15.78■□□□□ 0.12
USP42-206ENST00000479544 EIF2AK4Q9P2K8 1649 aaKnown RBP15.78■□□□□ 0.12
USP42-206ENST00000479544 A0A087WWV3 80 aa15.78■□□□□ 0.12
USP42-206ENST00000479544 GNAT3A8MTJ3 354 aa15.78■□□□□ 0.12
USP42-206ENST00000479544 SMTNL1A8MU46 457 aa15.78■□□□□ 0.12
USP42-206ENST00000479544 CHST3Q7LGC8 479 aa15.78■□□□□ 0.12
USP42-206ENST00000479544 SLU7O95391 586 aaKnown RBP15.78■□□□□ 0.12
USP42-206ENST00000479544 HAND2P61296 217 aa15.78■□□□□ 0.12
USP42-206ENST00000479544 NAA30Q147X3 362 aaPredicted RBP15.78■□□□□ 0.12
USP42-206ENST00000479544 TRIM34Q9BYJ4 488 aa15.78■□□□□ 0.12
USP42-206ENST00000479544 A2ML1A8K2U0 1454 aa15.78■□□□□ 0.12
USP42-206ENST00000479544 A0A1W2PP64 1363 aa15.77■□□□□ 0.12
USP42-206ENST00000479544 PHACTR2O75167 634 aa15.77■□□□□ 0.12
USP42-206ENST00000479544 TOP1P11387 765 aaKnown RBP15.77■□□□□ 0.12
USP42-206ENST00000479544 CBX8Q9HC52 389 aa15.77■□□□□ 0.12
USP42-206ENST00000479544 STX1AQ16623 288 aa15.77■□□□□ 0.12
USP42-206ENST00000479544 PPIP5K1Q6PFW1 1433 aa15.77■□□□□ 0.12
USP42-206ENST00000479544 ATP8B2P98198 1209 aa15.77■□□□□ 0.11
USP42-206ENST00000479544 DNAAF4Q8WXU2 420 aa15.77■□□□□ 0.11
USP42-206ENST00000479544 RUFY1Q96T51 708 aa15.77■□□□□ 0.11
USP42-206ENST00000479544 NLRP2Q9NX02 1062 aa15.77■□□□□ 0.11
USP42-206ENST00000479544 LIG1P18858 919 aa15.77■□□□□ 0.11
USP42-206ENST00000479544 PPFIBP1Q86W92 1011 aa15.77■□□□□ 0.11
USP42-206ENST00000479544 SLC3A2P08195 630 aaKnown RBP15.76■□□□□ 0.11
USP42-206ENST00000479544 MPRIPQ6WCQ1 1025 aa15.76■□□□□ 0.11
USP42-206ENST00000479544 C10orf67Q8IYJ2 551 aa15.76■□□□□ 0.11
USP42-206ENST00000479544 ANKRD20A12PQ8NF67 263 aa15.76■□□□□ 0.11
USP42-206ENST00000479544 REREQ9P2R6 1566 aa15.76■□□□□ 0.11
USP42-206ENST00000479544 KIF4BQ2VIQ3 1234 aa15.76■□□□□ 0.11
USP42-206ENST00000479544 FEZ1Q99689 392 aa15.76■□□□□ 0.11
USP42-206ENST00000479544 TSPYL1Q9H0U9 437 aa15.76■□□□□ 0.11
USP42-206ENST00000479544 BTBD11A6QL63 1104 aa15.76■□□□□ 0.11
USP42-206ENST00000479544 CCDC70Q6NSX1 233 aa15.76■□□□□ 0.11
USP42-206ENST00000479544 LARP1Q6PKG0 1096 aaKnown RBP15.76■□□□□ 0.11
USP42-206ENST00000479544 ACBD3Q9H3P7 528 aa15.76■□□□□ 0.11
USP42-206ENST00000479544 CCP110O43303 1012 aa15.75■□□□□ 0.11
USP42-206ENST00000479544 ATP2B3Q16720 1220 aa15.75■□□□□ 0.11
USP42-206ENST00000479544 UNC5CLQ8IV45 518 aa15.75■□□□□ 0.11
USP42-206ENST00000479544 ZNF397Q8NF99 534 aaPredicted RBP15.75■□□□□ 0.11
USP42-206ENST00000479544 KIF2CQ99661 725 aa15.75■□□□□ 0.11
USP42-206ENST00000479544 SNX14Q9Y5W7 946 aa15.75■□□□□ 0.11
USP42-206ENST00000479544 HSPA1LP34931 641 aa15.75■□□□□ 0.11
USP42-206ENST00000479544 ZNF215Q9UL58 517 aaPredicted RBP15.75■□□□□ 0.11
USP42-206ENST00000479544 KIF2AO00139 706 aaPredicted RBP15.75■□□□□ 0.11
USP42-206ENST00000479544 DDX46Q7L014 1031 aaKnown RBP15.75■□□□□ 0.11
USP42-206ENST00000479544 PHAXQ9H814 394 aaKnown RBP15.75■□□□□ 0.11
USP42-206ENST00000479544 DMTNQ08495 405 aa15.74■□□□□ 0.11
USP42-206ENST00000479544 NPHP4O75161 1426 aaPredicted RBP15.74■□□□□ 0.11
USP42-206ENST00000479544 PLA2R1Q13018 1463 aa15.74■□□□□ 0.11
USP42-206ENST00000479544 CCDC144CPQ8IYA2 1237 aa15.74■□□□□ 0.11
USP42-206ENST00000479544 GPATCH11Q8N954 259 aa15.74■□□□□ 0.11
USP42-206ENST00000479544 RBM33Q96EV2 1170 aaKnown RBP15.74■□□□□ 0.11
USP42-206ENST00000479544 CDC37L1Q7L3B6 337 aa15.74■□□□□ 0.11
USP42-206ENST00000479544 IPO4Q8TEX9 1081 aaKnown RBP15.74■□□□□ 0.11
USP42-206ENST00000479544 C8orf76Q96K31 380 aa15.74■□□□□ 0.11
USP42-206ENST00000479544 SNRKQ9NRH2 765 aa15.74■□□□□ 0.11
USP42-206ENST00000479544 IFNKQ9P0W0 207 aa15.74■□□□□ 0.11
USP42-206ENST00000479544 IQSEC2Q5JU85 1478 aa15.74■□□□□ 0.11
USP42-206ENST00000479544 NPHP3Q7Z494 1330 aa15.74■□□□□ 0.11
USP42-206ENST00000479544 MARCKSP29966 332 aaPredicted RBP15.74■□□□□ 0.11
USP42-206ENST00000479544 KRT32Q14532 448 aa15.74■□□□□ 0.11
USP42-206ENST00000479544 ATF3P18847 181 aa15.73■□□□□ 0.11
USP42-206ENST00000479544 EIF4A2Q14240 407 aaKnown RBP15.73■□□□□ 0.11
USP42-206ENST00000479544 CASQ1P31415 396 aa15.73■□□□□ 0.11
USP42-206ENST00000479544 NEK1Q96PY6 1258 aa15.73■□□□□ 0.11
USP42-206ENST00000479544 NLRP1Q9C000 1473 aa15.73■□□□□ 0.11
USP42-206ENST00000479544 DHX16O60231 1041 aaKnown RBP15.73■□□□□ 0.11
USP42-206ENST00000479544 CLSTN1O94985 981 aa15.72■□□□□ 0.11
USP42-206ENST00000479544 NDUFB9Q9Y6M9 179 aa15.72■□□□□ 0.11
USP42-206ENST00000479544 ABCA6Q8N139 1617 aa15.72■□□□□ 0.11
USP42-206ENST00000479544 CCDC171Q6TFL3 1326 aa15.72■□□□□ 0.11
USP42-206ENST00000479544 NMIQ13287 307 aaPredicted RBP15.72■□□□□ 0.11
USP42-206ENST00000479544 JAKMIP3Q5VZ66 844 aa15.72■□□□□ 0.11
USP42-206ENST00000479544 CENPHQ9H3R5 247 aa15.72■□□□□ 0.11
USP42-206ENST00000479544 ZDHHC9Q9Y397 364 aa15.72■□□□□ 0.11
USP42-206ENST00000479544 A0A1B0GVL5 298 aa15.72■□□□□ 0.11
USP42-206ENST00000479544 NEMFO60524 1076 aa15.72■□□□□ 0.11
USP42-206ENST00000479544 ESCO1Q5FWF5 840 aa15.72■□□□□ 0.11
USP42-206ENST00000479544 EVI5LQ96CN4 794 aa15.72■□□□□ 0.11
USP42-206ENST00000479544 JMYQ8N9B5 988 aa15.71■□□□□ 0.11
USP42-206ENST00000479544 CCDC12Q8WUD4 166 aaPredicted RBP15.71■□□□□ 0.11
USP42-206ENST00000479544 NUP133Q8WUM0 1156 aa15.71■□□□□ 0.11
USP42-206ENST00000479544 GSDMDP57764 484 aa15.71■□□□□ 0.11
USP42-206ENST00000479544 MTHFSDQ2M296 383 aaKnown RBP15.71■□□□□ 0.11
USP42-206ENST00000479544 ERCC6LQ2NKX8 1250 aa15.71■□□□□ 0.11
USP42-206ENST00000479544 LRRFIP1Q32MZ4 808 aaKnown RBP15.71■□□□□ 0.11
USP42-206ENST00000479544 RASEFQ8IZ41 740 aa15.71■□□□□ 0.11
USP42-206ENST00000479544 RAPGEF4Q8WZA2 1011 aa15.71■□□□□ 0.11
USP42-206ENST00000479544 CHPF2Q9P2E5 772 aa15.71■□□□□ 0.11
USP42-206ENST00000479544 ERLIN1O75477 346 aa15.71■□□□□ 0.11
USP42-206ENST00000479544 ZNF75DP51815 510 aa15.71■□□□□ 0.11
USP42-206ENST00000479544 FILIP1LQ4L180 1135 aa15.71■□□□□ 0.11
USP42-206ENST00000479544 CREB3L3Q68CJ9 461 aa15.71■□□□□ 0.11
USP42-206ENST00000479544 MAP3K2Q9Y2U5 619 aa15.71■□□□□ 0.11
USP42-206ENST00000479544 PIP4K2AP48426 406 aaPredicted RBP15.71■□□□□ 0.1
USP42-206ENST00000479544 Q6ZUG5 572 aa15.71■□□□□ 0.1
USP42-206ENST00000479544 FAM227BQ96M60 508 aa15.71■□□□□ 0.1
USP42-206ENST00000479544 CBFA2T2O43439 604 aa15.7■□□□□ 0.1
USP42-206ENST00000479544 EIF3JO75822 258 aaKnown RBP15.7■□□□□ 0.1
USP42-206ENST00000479544 UBASH3AP57075 661 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms