RNA–Protein interactions for RNA: ENST00000475549.1

HDAC3-207, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 297 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-207ENST00000475549 ZNF541Q9H0D2 1346 aa9.23□□□□□ -0.93
HDAC3-207ENST00000475549 SBF1O95248 1867 aa9.23□□□□□ -0.93
HDAC3-207ENST00000475549 BCORQ6W2J9 1755 aa9.22□□□□□ -0.93
HDAC3-207ENST00000475549 FZD9O00144 591 aa9.22□□□□□ -0.93
HDAC3-207ENST00000475549 SLC10A5Q5PT55 438 aa9.22□□□□□ -0.93
HDAC3-207ENST00000475549 XAGE3Q8WTP9 111 aa9.22□□□□□ -0.93
HDAC3-207ENST00000475549 L3MBTL3Q96JM7 780 aaPredicted RBP9.22□□□□□ -0.93
HDAC3-207ENST00000475549 PRKRIP1Q9H875 184 aaPredicted RBP9.22□□□□□ -0.93
HDAC3-207ENST00000475549 IARSP41252 1262 aaKnown RBP9.21□□□□□ -0.94
HDAC3-207ENST00000475549 LMOD3Q0VAK6 560 aa9.21□□□□□ -0.94
HDAC3-207ENST00000475549 AIMP1Q12904 312 aaKnown RBP9.21□□□□□ -0.94
HDAC3-207ENST00000475549 ZNF428Q96B54 188 aa9.21□□□□□ -0.94
HDAC3-207ENST00000475549 CRAMP1Q96RY5 1269 aa9.21□□□□□ -0.94
HDAC3-207ENST00000475549 PSMD1Q99460 953 aa9.21□□□□□ -0.94
HDAC3-207ENST00000475549 TAF1DQ9H5J8 278 aaPredicted RBP9.21□□□□□ -0.94
HDAC3-207ENST00000475549 KDM3BQ7LBC6 1761 aa9.21□□□□□ -0.94
HDAC3-207ENST00000475549 IBTKQ9P2D0 1353 aaPredicted RBP9.21□□□□□ -0.94
HDAC3-207ENST00000475549 TCERG1O14776 1098 aaKnown RBP9.2□□□□□ -0.94
HDAC3-207ENST00000475549 ITGBL1O95965 494 aaPredicted RBP9.2□□□□□ -0.94
HDAC3-207ENST00000475549 ZNF853P0CG23 659 aa9.2□□□□□ -0.94
HDAC3-207ENST00000475549 TCIRG1Q13488 830 aa9.2□□□□□ -0.94
HDAC3-207ENST00000475549 CCDC184Q52MB2 194 aa9.2□□□□□ -0.94
HDAC3-207ENST00000475549 PARP10Q53GL7 1025 aa9.2□□□□□ -0.94
HDAC3-207ENST00000475549 CHADLQ6NUI6 762 aa9.2□□□□□ -0.94
HDAC3-207ENST00000475549 NLRP10Q86W26 655 aa9.2□□□□□ -0.94
HDAC3-207ENST00000475549 UTP14AQ9BVJ6 771 aaKnown RBP9.2□□□□□ -0.94
HDAC3-207ENST00000475549 DDX21Q9NR30 783 aaKnown RBP eCLIP9.2□□□□□ -0.94
HDAC3-207ENST00000475549 CHPF2Q9P2E5 772 aa9.2□□□□□ -0.94
HDAC3-207ENST00000475549 LAS1LQ9Y4W2 734 aaKnown RBP9.2□□□□□ -0.94
HDAC3-207ENST00000475549 COL4A5P29400 1685 aa9.2□□□□□ -0.94
HDAC3-207ENST00000475549 FER1L6Q2WGJ9 1857 aa9.19□□□□□ -0.94
HDAC3-207ENST00000475549 HCLS1P14317 486 aaPredicted RBP9.19□□□□□ -0.94
HDAC3-207ENST00000475549 WDR43Q15061 677 aaKnown RBP eCLIP9.19□□□□□ -0.94
HDAC3-207ENST00000475549 PPP1R42Q7Z4L9 355 aa9.19□□□□□ -0.94
HDAC3-207ENST00000475549 RPGRQ92834 1020 aaKnown RBP9.19□□□□□ -0.94
HDAC3-207ENST00000475549 RBM17Q96I25 401 aaKnown RBP9.19□□□□□ -0.94
HDAC3-207ENST00000475549 CFAP44Q96MT7 982 aa9.19□□□□□ -0.94
HDAC3-207ENST00000475549 NLRP3Q96P20 1036 aa9.19□□□□□ -0.94
HDAC3-207ENST00000475549 MBIPQ9NS73 344 aa9.19□□□□□ -0.94
HDAC3-207ENST00000475549 PASKQ96RG2 1323 aa9.19□□□□□ -0.94
HDAC3-207ENST00000475549 TNRC6CQ9HCJ0 1690 aaKnown RBP9.19□□□□□ -0.94
HDAC3-207ENST00000475549 WDR90Q96KV7 1748 aa9.19□□□□□ -0.94
HDAC3-207ENST00000475549 IQCA1LA6NCM1 817 aa9.18□□□□□ -0.94
HDAC3-207ENST00000475549 APAF1O14727 1248 aa9.18□□□□□ -0.94
HDAC3-207ENST00000475549 PPEF1O14829 653 aaPredicted RBP9.18□□□□□ -0.94
HDAC3-207ENST00000475549 ABCC4O15439 1325 aa9.18□□□□□ -0.94
HDAC3-207ENST00000475549 RIC1Q4ADV7 1423 aa9.18□□□□□ -0.94
HDAC3-207ENST00000475549 COL13A1Q5TAT6 717 aaPredicted RBP9.18□□□□□ -0.94
HDAC3-207ENST00000475549 DUSP27Q5VZP5 1158 aa9.18□□□□□ -0.94
HDAC3-207ENST00000475549 RNF123Q5XPI4 1314 aa9.18□□□□□ -0.94
HDAC3-207ENST00000475549 CC2D2BQ6DHV5 1058 aa9.18□□□□□ -0.94
HDAC3-207ENST00000475549 GPC2Q8N158 579 aa9.18□□□□□ -0.94
HDAC3-207ENST00000475549 ATP6V0A2Q9Y487 856 aa9.18□□□□□ -0.94
HDAC3-207ENST00000475549 DLG5Q8TDM6 1919 aa9.17□□□□□ -0.94
HDAC3-207ENST00000475549 EPHX2P34913 555 aa9.17□□□□□ -0.94
HDAC3-207ENST00000475549 HDGFL1Q5TGJ6 251 aa9.17□□□□□ -0.94
HDAC3-207ENST00000475549 ANKRD13DQ6ZTN6 518 aa9.17□□□□□ -0.94
HDAC3-207ENST00000475549 LDHDQ86WU2 507 aa9.17□□□□□ -0.94
HDAC3-207ENST00000475549 PLBD2Q8NHP8 589 aa9.17□□□□□ -0.94
HDAC3-207ENST00000475549 ISCA1Q9BUE6 129 aa9.17□□□□□ -0.94
HDAC3-207ENST00000475549 RTFDC1Q9BY42 306 aaPredicted RBP9.17□□□□□ -0.94
HDAC3-207ENST00000475549 TRMT112Q9UI30 125 aaKnown RBP9.17□□□□□ -0.94
HDAC3-207ENST00000475549 HACL1Q9UJ83 578 aa9.17□□□□□ -0.94
HDAC3-207ENST00000475549 TIAM2Q8IVF5 1701 aa9.17□□□□□ -0.94
HDAC3-207ENST00000475549 ATP5J2-PTCD1G3V325 749 aa9.16□□□□□ -0.94
HDAC3-207ENST00000475549 ELL2O00472 640 aaPredicted RBP9.16□□□□□ -0.94
HDAC3-207ENST00000475549 HOXB7P09629 217 aa9.16□□□□□ -0.94
HDAC3-207ENST00000475549 EPS15P42566 896 aa9.16□□□□□ -0.94
HDAC3-207ENST00000475549 SCNN1DP51172 638 aa9.16□□□□□ -0.94
HDAC3-207ENST00000475549 EAPPQ56P03 285 aaPredicted RBP9.16□□□□□ -0.94
HDAC3-207ENST00000475549 HSP90AB3PQ58FF7 597 aa9.16□□□□□ -0.94
HDAC3-207ENST00000475549 SP8Q8IXZ3 490 aa9.16□□□□□ -0.94
HDAC3-207ENST00000475549 LARGE2Q8N3Y3 721 aa9.16□□□□□ -0.94
HDAC3-207ENST00000475549 C8orf58Q8NAV2 365 aa9.16□□□□□ -0.94
HDAC3-207ENST00000475549 JDP2Q8WYK2 163 aa9.16□□□□□ -0.94
HDAC3-207ENST00000475549 FAM89AQ96GI7 184 aa9.16□□□□□ -0.94
HDAC3-207ENST00000475549 CREBZFQ9NS37 354 aa9.16□□□□□ -0.94
HDAC3-207ENST00000475549 DBF4Q9UBU7 674 aaPredicted RBP9.16□□□□□ -0.94
HDAC3-207ENST00000475549 LAMB4A4D0S4 1761 aa9.16□□□□□ -0.94
HDAC3-207ENST00000475549 SH3TC1Q8TE82 1336 aa9.15□□□□□ -0.94
HDAC3-207ENST00000475549 BBOX1O75936 387 aa9.15□□□□□ -0.94
HDAC3-207ENST00000475549 FMR1Q06787 632 aaKnown RBP eCLIP9.15□□□□□ -0.94
HDAC3-207ENST00000475549 AOC3Q16853 763 aa9.15□□□□□ -0.94
HDAC3-207ENST00000475549 GRIPAP1Q4V328 841 aa9.15□□□□□ -0.94
HDAC3-207ENST00000475549 MAP1SQ66K74 1059 aaPredicted RBP9.15□□□□□ -0.94
HDAC3-207ENST00000475549 CNTROBQ8N137 903 aa9.15□□□□□ -0.94
HDAC3-207ENST00000475549 PHAXQ9H814 394 aaKnown RBP9.15□□□□□ -0.94
HDAC3-207ENST00000475549 IFT57Q9NWB7 429 aa9.15□□□□□ -0.94
HDAC3-207ENST00000475549 MKRN1Q9UHC7 482 aaKnown RBP9.15□□□□□ -0.94
HDAC3-207ENST00000475549 GJA3Q9Y6H8 435 aa9.15□□□□□ -0.94
HDAC3-207ENST00000475549 EIF6P56537 245 aaKnown RBP9.14□□□□□ -0.95
HDAC3-207ENST00000475549 CXCL9Q07325 125 aa9.14□□□□□ -0.95
HDAC3-207ENST00000475549 TRIM28Q13263 835 aaKnown RBP9.14□□□□□ -0.95
HDAC3-207ENST00000475549 TSPYL6Q8N831 410 aa9.14□□□□□ -0.95
HDAC3-207ENST00000475549 CELF1Q92879 486 aaKnown RBP9.14□□□□□ -0.95
HDAC3-207ENST00000475549 HYPKQ9NX55 129 aa9.14□□□□□ -0.95
HDAC3-207ENST00000475549 CLEC11AQ9Y240 323 aa9.14□□□□□ -0.95
HDAC3-207ENST00000475549 NUP98P52948 1817 aa9.13□□□□□ -0.95
HDAC3-207ENST00000475549 PPIP5K2O43314 1243 aa9.13□□□□□ -0.95
HDAC3-207ENST00000475549 GRAPQ13588 217 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms