RNA–Protein interactions for RNA: ENST00000474258.1

SEMA4D-216, Transcript of semaphorin 4D, humanhuman

TSL 4

Gene SEMA4D, Length 528 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-216ENST00000474258 NTSR2O95665 410 aa14.46□□□□□ -0.09
SEMA4D-216ENST00000474258 ANXA1P04083 346 aa14.46□□□□□ -0.09
SEMA4D-216ENST00000474258 HOXA10P31260 410 aaPredicted RBP14.46□□□□□ -0.09
SEMA4D-216ENST00000474258 PROSER3Q2NL68 480 aa14.46□□□□□ -0.09
SEMA4D-216ENST00000474258 IFFO2Q5TF58 517 aa14.46□□□□□ -0.09
SEMA4D-216ENST00000474258 SYNE4Q8N205 404 aa14.46□□□□□ -0.09
SEMA4D-216ENST00000474258 RBM17Q96I25 401 aaKnown RBP14.46□□□□□ -0.09
SEMA4D-216ENST00000474258 PSMD1Q99460 953 aa14.46□□□□□ -0.09
SEMA4D-216ENST00000474258 ADAMTS8Q9UP79 889 aa14.46□□□□□ -0.09
SEMA4D-216ENST00000474258 TRIM35Q9UPQ4 493 aa14.46□□□□□ -0.09
SEMA4D-216ENST00000474258 LAS1LQ9Y4W2 734 aaKnown RBP14.46□□□□□ -0.09
SEMA4D-216ENST00000474258 LAMB2P55268 1798 aa14.46□□□□□ -0.09
SEMA4D-216ENST00000474258 IARSP41252 1262 aaKnown RBP14.45□□□□□ -0.1
SEMA4D-216ENST00000474258 GRIPAP1Q4V328 841 aa14.45□□□□□ -0.1
SEMA4D-216ENST00000474258 COPS6Q7L5N1 327 aa14.45□□□□□ -0.1
SEMA4D-216ENST00000474258 JMYQ8N9B5 988 aa14.45□□□□□ -0.1
SEMA4D-216ENST00000474258 NECTIN2Q92692 538 aa14.45□□□□□ -0.1
SEMA4D-216ENST00000474258 L3MBTL3Q96JM7 780 aaPredicted RBP14.45□□□□□ -0.1
SEMA4D-216ENST00000474258 NLRP3Q96P20 1036 aa14.45□□□□□ -0.1
SEMA4D-216ENST00000474258 CRAMP1Q96RY5 1269 aa14.45□□□□□ -0.1
SEMA4D-216ENST00000474258 UTP14AQ9BVJ6 771 aaKnown RBP14.45□□□□□ -0.1
SEMA4D-216ENST00000474258 AIMP1Q12904 312 aaKnown RBP14.44□□□□□ -0.1
SEMA4D-216ENST00000474258 HSP90AB3PQ58FF7 597 aa14.44□□□□□ -0.1
SEMA4D-216ENST00000474258 SLC10A5Q5PT55 438 aa14.44□□□□□ -0.1
SEMA4D-216ENST00000474258 CHADLQ6NUI6 762 aa14.44□□□□□ -0.1
SEMA4D-216ENST00000474258 PRKRIP1Q9H875 184 aaPredicted RBP14.44□□□□□ -0.1
SEMA4D-216ENST00000474258 DDX21Q9NR30 783 aaKnown RBP eCLIP14.44□□□□□ -0.1
SEMA4D-216ENST00000474258 FZD9O00144 591 aa14.43□□□□□ -0.1
SEMA4D-216ENST00000474258 XAGE3Q8WTP9 111 aa14.43□□□□□ -0.1
SEMA4D-216ENST00000474258 JDP2Q8WYK2 163 aa14.43□□□□□ -0.1
SEMA4D-216ENST00000474258 RNF123Q5XPI4 1314 aa14.42□□□□□ -0.1
SEMA4D-216ENST00000474258 ZNF541Q9H0D2 1346 aa14.42□□□□□ -0.1
SEMA4D-216ENST00000474258 SNED1Q8TER0 1413 aa14.42□□□□□ -0.1
SEMA4D-216ENST00000474258 TAF1P21675 1872 aa14.42□□□□□ -0.1
SEMA4D-216ENST00000474258 PPEF1O14829 653 aaPredicted RBP14.42□□□□□ -0.1
SEMA4D-216ENST00000474258 HOXB7P09629 217 aa14.42□□□□□ -0.1
SEMA4D-216ENST00000474258 POTEIP0CG38 1075 aa14.42□□□□□ -0.1
SEMA4D-216ENST00000474258 POTEJP0CG39 1038 aa14.42□□□□□ -0.1
SEMA4D-216ENST00000474258 TCIRG1Q13488 830 aa14.42□□□□□ -0.1
SEMA4D-216ENST00000474258 KRT24Q2M2I5 525 aa14.42□□□□□ -0.1
SEMA4D-216ENST00000474258 C3orf67Q6ZVT6 689 aa14.42□□□□□ -0.1
SEMA4D-216ENST00000474258 TAF1DQ9H5J8 278 aaPredicted RBP14.42□□□□□ -0.1
SEMA4D-216ENST00000474258 LDHDQ86WU2 507 aa14.41□□□□□ -0.1
SEMA4D-216ENST00000474258 CFAP44Q96MT7 982 aa14.41□□□□□ -0.1
SEMA4D-216ENST00000474258 TMX4Q9H1E5 349 aaPredicted RBP14.41□□□□□ -0.1
SEMA4D-216ENST00000474258 HACL1Q9UJ83 578 aa14.41□□□□□ -0.1
SEMA4D-216ENST00000474258 TCERG1O14776 1098 aaKnown RBP14.4□□□□□ -0.1
SEMA4D-216ENST00000474258 HDGFL1Q5TGJ6 251 aa14.4□□□□□ -0.1
SEMA4D-216ENST00000474258 NLRP10Q86W26 655 aa14.4□□□□□ -0.1
SEMA4D-216ENST00000474258 GPC2Q8N158 579 aa14.4□□□□□ -0.1
SEMA4D-216ENST00000474258 CHPF2Q9P2E5 772 aa14.4□□□□□ -0.1
SEMA4D-216ENST00000474258 EIF6P56537 245 aaKnown RBP14.39□□□□□ -0.11
SEMA4D-216ENST00000474258 EAPPQ56P03 285 aaPredicted RBP14.39□□□□□ -0.11
SEMA4D-216ENST00000474258 PNMA8AQ86V59 439 aaPredicted RBP14.39□□□□□ -0.11
SEMA4D-216ENST00000474258 LARGE2Q8N3Y3 721 aa14.39□□□□□ -0.11
SEMA4D-216ENST00000474258 PLBD2Q8NHP8 589 aa14.39□□□□□ -0.11
SEMA4D-216ENST00000474258 CREBZFQ9NS37 354 aa14.39□□□□□ -0.11
SEMA4D-216ENST00000474258 DBF4Q9UBU7 674 aaPredicted RBP14.39□□□□□ -0.11
SEMA4D-216ENST00000474258 TRMT112Q9UI30 125 aaKnown RBP14.39□□□□□ -0.11
SEMA4D-216ENST00000474258 ATP6V0A2Q9Y487 856 aa14.39□□□□□ -0.11
SEMA4D-216ENST00000474258 SH3TC1Q8TE82 1336 aa14.39□□□□□ -0.11
SEMA4D-216ENST00000474258 ADAMTSL1Q8N6G6 1762 aa14.38□□□□□ -0.11
SEMA4D-216ENST00000474258 APAF1O14727 1248 aa14.38□□□□□ -0.11
SEMA4D-216ENST00000474258 BBOX1O75936 387 aa14.38□□□□□ -0.11
SEMA4D-216ENST00000474258 EPHX2P34913 555 aa14.38□□□□□ -0.11
SEMA4D-216ENST00000474258 DUSP27Q5VZP5 1158 aa14.38□□□□□ -0.11
SEMA4D-216ENST00000474258 ANKRD13DQ6ZTN6 518 aa14.38□□□□□ -0.11
SEMA4D-216ENST00000474258 VPS33BQ9H267 617 aa14.38□□□□□ -0.11
SEMA4D-216ENST00000474258 CLEC11AQ9Y240 323 aa14.38□□□□□ -0.11
SEMA4D-216ENST00000474258 ABCC4O15439 1325 aa14.38□□□□□ -0.11
SEMA4D-216ENST00000474258 DDX60Q8IY21 1712 aaKnown RBP14.38□□□□□ -0.11
SEMA4D-216ENST00000474258 COL4A5P29400 1685 aa14.37□□□□□ -0.11
SEMA4D-216ENST00000474258 HCLS1P14317 486 aaPredicted RBP14.37□□□□□ -0.11
SEMA4D-216ENST00000474258 CALD1Q05682 793 aaKnown RBP14.37□□□□□ -0.11
SEMA4D-216ENST00000474258 MBIPQ9NS73 344 aa14.37□□□□□ -0.11
SEMA4D-216ENST00000474258 HYPKQ9NX55 129 aa14.37□□□□□ -0.11
SEMA4D-216ENST00000474258 ZNF853P0CG23 659 aa14.36□□□□□ -0.11
SEMA4D-216ENST00000474258 GNAI1P63096 354 aa14.36□□□□□ -0.11
SEMA4D-216ENST00000474258 DDX46Q7L014 1031 aaKnown RBP14.36□□□□□ -0.11
SEMA4D-216ENST00000474258 SP8Q8IXZ3 490 aa14.36□□□□□ -0.11
SEMA4D-216ENST00000474258 NIM1KQ8IY84 436 aa14.36□□□□□ -0.11
SEMA4D-216ENST00000474258 SUPT20HQ8NEM7 779 aa14.36□□□□□ -0.11
SEMA4D-216ENST00000474258 GJA3Q9Y6H8 435 aa14.36□□□□□ -0.11
SEMA4D-216ENST00000474258 PASKQ96RG2 1323 aa14.36□□□□□ -0.11
SEMA4D-216ENST00000474258 PPIP5K2O43314 1243 aa14.35□□□□□ -0.11
SEMA4D-216ENST00000474258 ITGBL1O95965 494 aaPredicted RBP14.35□□□□□ -0.11
SEMA4D-216ENST00000474258 LMOD1P29536 600 aaPredicted RBP14.35□□□□□ -0.11
SEMA4D-216ENST00000474258 SLC51AQ86UW1 340 aa14.35□□□□□ -0.11
SEMA4D-216ENST00000474258 ISCA1Q9BUE6 129 aa14.35□□□□□ -0.11
SEMA4D-216ENST00000474258 IFT57Q9NWB7 429 aa14.35□□□□□ -0.11
SEMA4D-216ENST00000474258 TRPM7Q96QT4 1865 aa14.35□□□□□ -0.11
SEMA4D-216ENST00000474258 GRAPQ13588 217 aa14.34□□□□□ -0.11
SEMA4D-216ENST00000474258 AOC3Q16853 763 aa14.34□□□□□ -0.11
SEMA4D-216ENST00000474258 DPP8Q6V1X1 898 aaPredicted RBP14.34□□□□□ -0.11
SEMA4D-216ENST00000474258 GRAPLQ8TC17 118 aaPredicted RBP14.34□□□□□ -0.11
SEMA4D-216ENST00000474258 RTFDC1Q9BY42 306 aaPredicted RBP14.34□□□□□ -0.11
SEMA4D-216ENST00000474258 LTBP1Q14766 1721 aa14.34□□□□□ -0.11
SEMA4D-216ENST00000474258 TMEM88BA6NKF7 163 aa14.33□□□□□ -0.12
SEMA4D-216ENST00000474258 ATP5J2-PTCD1G3V325 749 aa14.33□□□□□ -0.12
SEMA4D-216ENST00000474258 TMC4Q7Z404 712 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms