RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 CC2D2BQ6DHV5 1058 aa25.84■■□□□ 1.73
COL9A3-210ENST00000472880 CHADLQ6NUI6 762 aa25.84■■□□□ 1.73
COL9A3-210ENST00000472880 SYNE4Q8N205 404 aa25.84■■□□□ 1.73
COL9A3-210ENST00000472880 JMYQ8N9B5 988 aa25.84■■□□□ 1.73
COL9A3-210ENST00000472880 SNED1Q8TER0 1413 aa25.84■■□□□ 1.73
COL9A3-210ENST00000472880 NECTIN2Q92692 538 aa25.84■■□□□ 1.73
COL9A3-210ENST00000472880 L3MBTL3Q96JM7 780 aaPredicted RBP25.84■■□□□ 1.73
COL9A3-210ENST00000472880 ANKRD36CQ5JPF3 1778 aa25.84■■□□□ 1.73
COL9A3-210ENST00000472880 ZNF541Q9H0D2 1346 aa25.84■■□□□ 1.73
COL9A3-210ENST00000472880 RBM17Q96I25 401 aaKnown RBP25.83■■□□□ 1.73
COL9A3-210ENST00000472880 PSMD1Q99460 953 aa25.83■■□□□ 1.73
COL9A3-210ENST00000472880 LAS1LQ9Y4W2 734 aaKnown RBP25.83■■□□□ 1.73
COL9A3-210ENST00000472880 POTEIP0CG38 1075 aa25.81■■□□□ 1.72
COL9A3-210ENST00000472880 POTEJP0CG39 1038 aa25.81■■□□□ 1.72
COL9A3-210ENST00000472880 UTP14AQ9BVJ6 771 aaKnown RBP25.81■■□□□ 1.72
COL9A3-210ENST00000472880 CHL1O00533 1208 aa25.8■■□□□ 1.72
COL9A3-210ENST00000472880 PPEF1O14829 653 aaPredicted RBP25.8■■□□□ 1.72
COL9A3-210ENST00000472880 AIMP1Q12904 312 aaKnown RBP25.8■■□□□ 1.72
COL9A3-210ENST00000472880 HSP90AB3PQ58FF7 597 aa25.8■■□□□ 1.72
COL9A3-210ENST00000472880 COPS6Q7L5N1 327 aa25.8■■□□□ 1.72
COL9A3-210ENST00000472880 NLRP3Q96P20 1036 aa25.8■■□□□ 1.72
COL9A3-210ENST00000472880 CRAMP1Q96RY5 1269 aa25.8■■□□□ 1.72
COL9A3-210ENST00000472880 ADAMTS8Q9UP79 889 aa25.8■■□□□ 1.72
COL9A3-210ENST00000472880 TRIM35Q9UPQ4 493 aa25.8■■□□□ 1.72
COL9A3-210ENST00000472880 KRT24Q2M2I5 525 aa25.79■■□□□ 1.72
COL9A3-210ENST00000472880 GRIPAP1Q4V328 841 aa25.79■■□□□ 1.72
COL9A3-210ENST00000472880 XAGE3Q8WTP9 111 aa25.79■■□□□ 1.72
COL9A3-210ENST00000472880 JDP2Q8WYK2 163 aa25.79■■□□□ 1.72
COL9A3-210ENST00000472880 TAF1DQ9H5J8 278 aaPredicted RBP25.79■■□□□ 1.72
COL9A3-210ENST00000472880 RNF123Q5XPI4 1314 aa25.79■■□□□ 1.72
COL9A3-210ENST00000472880 FZD9O00144 591 aa25.78■■□□□ 1.72
COL9A3-210ENST00000472880 C3orf67Q6ZVT6 689 aa25.78■■□□□ 1.72
COL9A3-210ENST00000472880 LDHDQ86WU2 507 aa25.78■■□□□ 1.72
COL9A3-210ENST00000472880 DDX21Q9NR30 783 aaKnown RBP eCLIP25.78■■□□□ 1.72
COL9A3-210ENST00000472880 PRKRIP1Q9H875 184 aaPredicted RBP25.77■■□□□ 1.72
COL9A3-210ENST00000472880 HACL1Q9UJ83 578 aa25.77■■□□□ 1.72
COL9A3-210ENST00000472880 TCERG1O14776 1098 aaKnown RBP25.76■■□□□ 1.71
COL9A3-210ENST00000472880 EAPPQ56P03 285 aaPredicted RBP25.76■■□□□ 1.71
COL9A3-210ENST00000472880 TMX4Q9H1E5 349 aaPredicted RBP25.76■■□□□ 1.71
COL9A3-210ENST00000472880 SLC10A5Q5PT55 438 aa25.75■■□□□ 1.71
COL9A3-210ENST00000472880 HDGFL1Q5TGJ6 251 aa25.75■■□□□ 1.71
COL9A3-210ENST00000472880 GPC2Q8N158 579 aa25.75■■□□□ 1.71
COL9A3-210ENST00000472880 CHPF2Q9P2E5 772 aa25.75■■□□□ 1.71
COL9A3-210ENST00000472880 LAMB2P55268 1798 aa25.74■■□□□ 1.71
COL9A3-210ENST00000472880 HOXB7P09629 217 aa25.74■■□□□ 1.71
COL9A3-210ENST00000472880 EIF6P56537 245 aaKnown RBP25.74■■□□□ 1.71
COL9A3-210ENST00000472880 NLRP10Q86W26 655 aa25.74■■□□□ 1.71
COL9A3-210ENST00000472880 COL4A5P29400 1685 aa25.74■■□□□ 1.71
COL9A3-210ENST00000472880 EPHX2P34913 555 aa25.73■■□□□ 1.71
COL9A3-210ENST00000472880 TCIRG1Q13488 830 aa25.73■■□□□ 1.71
COL9A3-210ENST00000472880 LARGE2Q8N3Y3 721 aa25.73■■□□□ 1.71
COL9A3-210ENST00000472880 CREBZFQ9NS37 354 aa25.73■■□□□ 1.71
COL9A3-210ENST00000472880 ABCC4O15439 1325 aa25.72■■□□□ 1.71
COL9A3-210ENST00000472880 SLC51AQ86UW1 340 aa25.72■■□□□ 1.71
COL9A3-210ENST00000472880 CFAP44Q96MT7 982 aa25.72■■□□□ 1.71
COL9A3-210ENST00000472880 TRMT112Q9UI30 125 aaKnown RBP25.72■■□□□ 1.71
COL9A3-210ENST00000472880 SH3TC1Q8TE82 1336 aa25.71■■□□□ 1.71
COL9A3-210ENST00000472880 PNMA8AQ86V59 439 aaPredicted RBP25.71■■□□□ 1.71
COL9A3-210ENST00000472880 DBF4Q9UBU7 674 aaPredicted RBP25.71■■□□□ 1.71
COL9A3-210ENST00000472880 CLEC11AQ9Y240 323 aa25.71■■□□□ 1.71
COL9A3-210ENST00000472880 ATP6V0A2Q9Y487 856 aa25.71■■□□□ 1.71
COL9A3-210ENST00000472880 GJA3Q9Y6H8 435 aa25.71■■□□□ 1.71
COL9A3-210ENST00000472880 ADAMTSL1Q8N6G6 1762 aa25.71■■□□□ 1.71
COL9A3-210ENST00000472880 HCLS1P14317 486 aaPredicted RBP25.7■■□□□ 1.7
COL9A3-210ENST00000472880 NIM1KQ8IY84 436 aa25.69■■□□□ 1.7
COL9A3-210ENST00000472880 PLBD2Q8NHP8 589 aa25.69■■□□□ 1.7
COL9A3-210ENST00000472880 PASKQ96RG2 1323 aa25.68■■□□□ 1.7
COL9A3-210ENST00000472880 PPIP5K2O43314 1243 aa25.68■■□□□ 1.7
COL9A3-210ENST00000472880 LMOD1P29536 600 aaPredicted RBP25.68■■□□□ 1.7
COL9A3-210ENST00000472880 MBIPQ9NS73 344 aa25.68■■□□□ 1.7
COL9A3-210ENST00000472880 DUSP27Q5VZP5 1158 aa25.67■■□□□ 1.7
COL9A3-210ENST00000472880 DDX46Q7L014 1031 aaKnown RBP25.67■■□□□ 1.7
COL9A3-210ENST00000472880 APAF1O14727 1248 aa25.66■■□□□ 1.7
COL9A3-210ENST00000472880 BBOX1O75936 387 aa25.66■■□□□ 1.7
COL9A3-210ENST00000472880 CALD1Q05682 793 aaKnown RBP25.66■■□□□ 1.7
COL9A3-210ENST00000472880 ANKRD13DQ6ZTN6 518 aa25.66■■□□□ 1.7
COL9A3-210ENST00000472880 SUPT20HQ8NEM7 779 aa25.66■■□□□ 1.7
COL9A3-210ENST00000472880 HYPKQ9NX55 129 aa25.66■■□□□ 1.7
COL9A3-210ENST00000472880 MKRN1Q9UHC7 482 aaKnown RBP25.66■■□□□ 1.7
COL9A3-210ENST00000472880 HSPA1AP0DMV8 641 aaKnown RBP25.65■■□□□ 1.7
COL9A3-210ENST00000472880 HSPA1BP0DMV9 641 aaKnown RBP25.65■■□□□ 1.7
COL9A3-210ENST00000472880 AOC3Q16853 763 aa25.65■■□□□ 1.7
COL9A3-210ENST00000472880 VPS33BQ9H267 617 aa25.65■■□□□ 1.7
COL9A3-210ENST00000472880 DDX60Q8IY21 1712 aaKnown RBP25.65■■□□□ 1.7
COL9A3-210ENST00000472880 LTBP1Q14766 1721 aa25.64■■□□□ 1.7
COL9A3-210ENST00000472880 ITGBL1O95965 494 aaPredicted RBP25.64■■□□□ 1.7
COL9A3-210ENST00000472880 GRAPQ13588 217 aa25.64■■□□□ 1.7
COL9A3-210ENST00000472880 DPP8Q6V1X1 898 aaPredicted RBP25.64■■□□□ 1.7
COL9A3-210ENST00000472880 GRAPLQ8TC17 118 aaPredicted RBP25.64■■□□□ 1.7
COL9A3-210ENST00000472880 ZNF428Q96B54 188 aa25.64■■□□□ 1.7
COL9A3-210ENST00000472880 IFT57Q9NWB7 429 aa25.64■■□□□ 1.7
COL9A3-210ENST00000472880 SP8Q8IXZ3 490 aa25.63■■□□□ 1.69
COL9A3-210ENST00000472880 CNTNAP1P78357 1384 aa25.62■■□□□ 1.69
COL9A3-210ENST00000472880 TMEM88BA6NKF7 163 aa25.62■■□□□ 1.69
COL9A3-210ENST00000472880 ZNF853P0CG23 659 aa25.62■■□□□ 1.69
COL9A3-210ENST00000472880 SCNN1DP51172 638 aa25.62■■□□□ 1.69
COL9A3-210ENST00000472880 GNAI1P63096 354 aa25.62■■□□□ 1.69
COL9A3-210ENST00000472880 COL13A1Q5TAT6 717 aaPredicted RBP25.62■■□□□ 1.69
COL9A3-210ENST00000472880 MAP1SQ66K74 1059 aaPredicted RBP25.62■■□□□ 1.69
COL9A3-210ENST00000472880 MPNDQ8N594 471 aa25.62■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms