RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 GIGYF2Q6Y7W6 1299 aaKnown RBP20.5■□□□□ 0.87
CCDC88B-205ENST00000472524 AIMP1Q12904 312 aaKnown RBP20.49■□□□□ 0.87
CCDC88B-205ENST00000472524 ZNF541Q9H0D2 1346 aa20.49■□□□□ 0.87
CCDC88B-205ENST00000472524 IBTKQ9P2D0 1353 aaPredicted RBP20.48■□□□□ 0.87
CCDC88B-205ENST00000472524 SUSD4Q5VX71 490 aa20.48■□□□□ 0.87
CCDC88B-205ENST00000472524 ZNF34Q8IZ26 560 aa20.48■□□□□ 0.87
CCDC88B-205ENST00000472524 HSPA1AP0DMV8 641 aaKnown RBP20.47■□□□□ 0.87
CCDC88B-205ENST00000472524 HSPA1BP0DMV9 641 aaKnown RBP20.47■□□□□ 0.87
CCDC88B-205ENST00000472524 CCDC184Q52MB2 194 aa20.47■□□□□ 0.87
CCDC88B-205ENST00000472524 RTKN2Q8IZC4 609 aa20.47■□□□□ 0.87
CCDC88B-205ENST00000472524 XAGE3Q8WTP9 111 aa20.47■□□□□ 0.87
CCDC88B-205ENST00000472524 L3MBTL3Q96JM7 780 aaPredicted RBP20.47■□□□□ 0.87
CCDC88B-205ENST00000472524 CFAP44Q96MT7 982 aa20.47■□□□□ 0.87
CCDC88B-205ENST00000472524 LAMB2P55268 1798 aa20.46■□□□□ 0.87
CCDC88B-205ENST00000472524 IQCA1LA6NCM1 817 aa20.46■□□□□ 0.87
CCDC88B-205ENST00000472524 ZNF316A6NFI3 1004 aaPredicted RBP20.46■□□□□ 0.87
CCDC88B-205ENST00000472524 NTSR2O95665 410 aa20.46■□□□□ 0.87
CCDC88B-205ENST00000472524 HDGFL1Q5TGJ6 251 aa20.46■□□□□ 0.87
CCDC88B-205ENST00000472524 COPS6Q7L5N1 327 aa20.46■□□□□ 0.87
CCDC88B-205ENST00000472524 TAF1DQ9H5J8 278 aaPredicted RBP20.46■□□□□ 0.87
CCDC88B-205ENST00000472524 DDX21Q9NR30 783 aaKnown RBP eCLIP20.46■□□□□ 0.87
CCDC88B-205ENST00000472524 CHPF2Q9P2E5 772 aa20.46■□□□□ 0.87
CCDC88B-205ENST00000472524 ALDH1B1P30837 517 aa20.45■□□□□ 0.86
CCDC88B-205ENST00000472524 CRY2Q49AN0 593 aa20.45■□□□□ 0.86
CCDC88B-205ENST00000472524 PARP10Q53GL7 1025 aa20.45■□□□□ 0.86
CCDC88B-205ENST00000472524 PPP1R42Q7Z4L9 355 aa20.45■□□□□ 0.86
CCDC88B-205ENST00000472524 CREBZFQ9NS37 354 aa20.45■□□□□ 0.86
CCDC88B-205ENST00000472524 MBIPQ9NS73 344 aa20.45■□□□□ 0.86
CCDC88B-205ENST00000472524 RIC1Q4ADV7 1423 aa20.44■□□□□ 0.86
CCDC88B-205ENST00000472524 LDHDQ86WU2 507 aa20.44■□□□□ 0.86
CCDC88B-205ENST00000472524 SYNE4Q8N205 404 aa20.44■□□□□ 0.86
CCDC88B-205ENST00000472524 RPGRQ92834 1020 aaKnown RBP20.44■□□□□ 0.86
CCDC88B-205ENST00000472524 MKRN1Q9UHC7 482 aaKnown RBP20.44■□□□□ 0.86
CCDC88B-205ENST00000472524 HOXB7P09629 217 aa20.43■□□□□ 0.86
CCDC88B-205ENST00000472524 IARSP41252 1262 aaKnown RBP20.43■□□□□ 0.86
CCDC88B-205ENST00000472524 DUSP27Q5VZP5 1158 aa20.43■□□□□ 0.86
CCDC88B-205ENST00000472524 CALD1Q05682 793 aaKnown RBP20.42■□□□□ 0.86
CCDC88B-205ENST00000472524 HSP90AB3PQ58FF7 597 aa20.42■□□□□ 0.86
CCDC88B-205ENST00000472524 SLC51AQ86UW1 340 aa20.42■□□□□ 0.86
CCDC88B-205ENST00000472524 UTP14AQ9BVJ6 771 aaKnown RBP20.42■□□□□ 0.86
CCDC88B-205ENST00000472524 IFT57Q9NWB7 429 aa20.42■□□□□ 0.86
CCDC88B-205ENST00000472524 PASKQ96RG2 1323 aa20.42■□□□□ 0.86
CCDC88B-205ENST00000472524 SNED1Q8TER0 1413 aa20.42■□□□□ 0.86
CCDC88B-205ENST00000472524 FZD9O00144 591 aa20.41■□□□□ 0.86
CCDC88B-205ENST00000472524 ZNF853P0CG23 659 aa20.41■□□□□ 0.86
CCDC88B-205ENST00000472524 GNAI1P63096 354 aa20.41■□□□□ 0.86
CCDC88B-205ENST00000472524 EAPPQ56P03 285 aaPredicted RBP20.41■□□□□ 0.86
CCDC88B-205ENST00000472524 TNS4Q8IZW8 715 aa20.41■□□□□ 0.86
CCDC88B-205ENST00000472524 TAF1P21675 1872 aa20.4■□□□□ 0.86
CCDC88B-205ENST00000472524 C3orf67Q6ZVT6 689 aa20.4■□□□□ 0.86
CCDC88B-205ENST00000472524 DBF4Q9UBU7 674 aaPredicted RBP20.4■□□□□ 0.86
CCDC88B-205ENST00000472524 HACL1Q9UJ83 578 aa20.4■□□□□ 0.86
CCDC88B-205ENST00000472524 RNF123Q5XPI4 1314 aa20.39■□□□□ 0.85
CCDC88B-205ENST00000472524 ANP32CO43423 234 aa20.39■□□□□ 0.85
CCDC88B-205ENST00000472524 CAPN15O75808 1086 aa20.39■□□□□ 0.85
CCDC88B-205ENST00000472524 EPHX2P34913 555 aa20.39■□□□□ 0.85
CCDC88B-205ENST00000472524 NLRP10Q86W26 655 aa20.39■□□□□ 0.85
CCDC88B-205ENST00000472524 ZNF428Q96B54 188 aa20.39■□□□□ 0.85
CCDC88B-205ENST00000472524 PSMD1Q99460 953 aa20.39■□□□□ 0.85
CCDC88B-205ENST00000472524 DDX60Q8IY21 1712 aaKnown RBP20.39■□□□□ 0.85
CCDC88B-205ENST00000472524 ELL2O00472 640 aaPredicted RBP20.38■□□□□ 0.85
CCDC88B-205ENST00000472524 ITGBL1O95965 494 aaPredicted RBP20.38■□□□□ 0.85
CCDC88B-205ENST00000472524 HOXA10P31260 410 aaPredicted RBP20.38■□□□□ 0.85
CCDC88B-205ENST00000472524 TCIRG1Q13488 830 aa20.38■□□□□ 0.85
CCDC88B-205ENST00000472524 RBM17Q96I25 401 aaKnown RBP20.38■□□□□ 0.85
CCDC88B-205ENST00000472524 NLRP3Q96P20 1036 aa20.38■□□□□ 0.85
CCDC88B-205ENST00000472524 MRS2Q9HD23 443 aa20.38■□□□□ 0.85
CCDC88B-205ENST00000472524 TCERG1O14776 1098 aaKnown RBP20.37■□□□□ 0.85
CCDC88B-205ENST00000472524 PLBD2Q8NHP8 589 aa20.37■□□□□ 0.85
CCDC88B-205ENST00000472524 CLEC11AQ9Y240 323 aa20.37■□□□□ 0.85
CCDC88B-205ENST00000472524 COL4A5P29400 1685 aa20.37■□□□□ 0.85
CCDC88B-205ENST00000472524 CNTNAP1P78357 1384 aa20.36■□□□□ 0.85
CCDC88B-205ENST00000472524 CC2D2BQ6DHV5 1058 aa20.36■□□□□ 0.85
CCDC88B-205ENST00000472524 ANKRD13DQ6ZTN6 518 aa20.36■□□□□ 0.85
CCDC88B-205ENST00000472524 GPC2Q8N158 579 aa20.36■□□□□ 0.85
CCDC88B-205ENST00000472524 JDP2Q8WYK2 163 aa20.36■□□□□ 0.85
CCDC88B-205ENST00000472524 CRAMP1Q96RY5 1269 aa20.36■□□□□ 0.85
CCDC88B-205ENST00000472524 HYPKQ9NX55 129 aa20.36■□□□□ 0.85
CCDC88B-205ENST00000472524 TRMT112Q9UI30 125 aaKnown RBP20.36■□□□□ 0.85
CCDC88B-205ENST00000472524 SCN4AP35499 1836 aa20.35■□□□□ 0.85
CCDC88B-205ENST00000472524 PPEF1O14829 653 aaPredicted RBP20.35■□□□□ 0.85
CCDC88B-205ENST00000472524 HCLS1P14317 486 aaPredicted RBP20.35■□□□□ 0.85
CCDC88B-205ENST00000472524 SLC10A5Q5PT55 438 aa20.35■□□□□ 0.85
CCDC88B-205ENST00000472524 MAP1SQ66K74 1059 aaPredicted RBP20.35■□□□□ 0.85
CCDC88B-205ENST00000472524 GJA3Q9Y6H8 435 aa20.35■□□□□ 0.85
CCDC88B-205ENST00000472524 TMEM88BA6NKF7 163 aa20.34■□□□□ 0.85
CCDC88B-205ENST00000472524 PNMA8AQ86V59 439 aaPredicted RBP20.34■□□□□ 0.85
CCDC88B-205ENST00000472524 C8orf58Q8NAV2 365 aa20.34■□□□□ 0.85
CCDC88B-205ENST00000472524 SH3TC1Q8TE82 1336 aa20.33■□□□□ 0.85
CCDC88B-205ENST00000472524 ATP5J2-PTCD1G3V325 749 aa20.33■□□□□ 0.85
CCDC88B-205ENST00000472524 CNTROBQ8N137 903 aa20.33■□□□□ 0.85
CCDC88B-205ENST00000472524 LARGE2Q8N3Y3 721 aa20.33■□□□□ 0.85
CCDC88B-205ENST00000472524 ABCC4O15439 1325 aa20.32■□□□□ 0.84
CCDC88B-205ENST00000472524 VEGFBP49765 207 aa20.32■□□□□ 0.84
CCDC88B-205ENST00000472524 EIF6P56537 245 aaKnown RBP20.32■□□□□ 0.84
CCDC88B-205ENST00000472524 TSR2Q969E8 191 aaKnown RBP20.32■□□□□ 0.84
CCDC88B-205ENST00000472524 PHAXQ9H814 394 aaKnown RBP20.32■□□□□ 0.84
CCDC88B-205ENST00000472524 GOLGA2Q08379 1002 aa20.31■□□□□ 0.84
CCDC88B-205ENST00000472524 GRIPAP1Q4V328 841 aa20.31■□□□□ 0.84
CCDC88B-205ENST00000472524 RIC3Q7Z5B4 369 aa20.31■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms