RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 ANO10Q9NW15 660 aa15.17■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 PDE4BQ07343 736 aa15.17■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 NBPF6Q5VWK0 638 aa15.17■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 NBPF5PQ86XG9 351 aaPredicted RBP15.17■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 NBPF4Q96M43 638 aa15.17■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 C16orf45Q96MC5 204 aaPredicted RBP15.17■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 ATP6V1E1P36543 226 aa15.17■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 SREK1Q8WXA9 508 aaKnown RBP15.17■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 FLIIQ13045 1269 aa15.17■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 KIF18AQ8NI77 898 aa15.17■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 ZNF408Q9H9D4 720 aa15.17■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 CADPSQ9ULU8 1353 aa15.17■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 FSIP1Q8NA03 581 aa15.17■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 CLIP2Q9UDT6 1046 aa15.17■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 MRVI1Q9Y6F6 885 aa15.17■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 ZSCAN12O43309 604 aa15.16■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 YEATS4O95619 227 aa15.16■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 PDCL2Q8N4E4 241 aa15.16■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 FANCD2Q9BXW9 1451 aa15.16■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 CALM1P0DP23 149 aa15.16■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 CALM2P0DP24 149 aa15.16■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 CALM3P0DP25 149 aa15.16■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 MX1P20591 662 aa15.16■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 PDE3AQ14432 1141 aa15.16■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 RNF41Q9H4P4 317 aaPredicted RBP15.16■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 TBCAO75347 108 aaKnown RBP15.16■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 TSPY3P0CV98 308 aa15.16■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 TSPY8P0CW00 308 aa15.16■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 RSPH3Q86UC2 560 aa15.16■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 SETD1BQ9UPS6 1966 aaKnown RBP15.15■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 CCDC160A6NGH7 325 aa15.15■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 AMPD3Q01432 767 aa15.15■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 CTR9Q6PD62 1173 aa15.15■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 EP400NLQ6ZTU2 488 aa15.15■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 CDC5LQ99459 802 aaKnown RBP15.15■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 KIF5BP33176 963 aa15.15■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 MFSD6Q6ZSS7 791 aa15.15■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 STXBP4Q6ZWJ1 553 aa15.15■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 KCNH5Q8NCM2 988 aa15.15■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.15■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 V9GYY5 206 aaPredicted RBP15.15■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 TSHZ3Q63HK5 1081 aa15.15■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 TMC6Q7Z403 805 aa15.15■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 SCAPERQ9BY12 1400 aa15.15■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 PTGS1P23219 599 aa15.15■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 AFMP43652 599 aa15.15■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 TPD52P55327 224 aaPredicted RBP15.15■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 BRD4O60885 1362 aaPredicted RBP15.15■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 ALS2CR12Q96Q35 445 aa15.15■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 EEF2P13639 858 aaKnown RBP15.14■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 SNX16P57768 344 aa15.14■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 GSTA5Q7RTV2 222 aa15.14■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 GBP3Q9H0R5 595 aa15.14■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 JAG2Q9Y219 1238 aa15.14■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 UBE3BQ7Z3V4 1068 aa15.14■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 SMC1BQ8NDV3 1235 aa15.14■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 FBF1Q8TES7 1133 aa15.14■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 IQCGQ9H095 443 aaKnown RBP15.14■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 PHAXQ9H814 394 aaKnown RBP15.14■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 ERCC5P28715 1186 aaPredicted RBP15.14■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 CHRNA2Q15822 529 aa15.14■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 HEATR3Q7Z4Q2 680 aa15.14■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 NAP1L3Q99457 506 aaPredicted RBP15.14■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 KIAA0753Q2KHM9 967 aa15.14■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 TBC1D5Q92609 795 aa15.14■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 C8orf37Q96NL8 207 aa15.14■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 RIOK3O14730 519 aaKnown RBP15.13■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 TMPOP42166 694 aaKnown RBP15.13■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 MAP3K2Q9Y2U5 619 aa15.13■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 GAPVD1Q14C86 1478 aa15.13■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 NCBP1Q09161 790 aaKnown RBP15.13■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 USP16Q9Y5T5 823 aa15.13■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 PLCB3Q01970 1234 aa15.13■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 NAA15Q9BXJ9 866 aaKnown RBP15.13■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 EXOC1Q9NV70 894 aa15.13■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 CLGNO14967 610 aa15.13■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 CCDC12Q8WUD4 166 aaPredicted RBP15.13■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 HAUS7Q99871 368 aa15.13■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 MAP7D1Q3KQU3 841 aa15.13■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 GINS2Q9Y248 185 aa15.12■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 NFE2L2Q16236 605 aa15.12■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 TRIM47Q96LD4 638 aa15.12■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 HMGB2P26583 209 aaKnown RBP15.12■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 IRX5P78411 483 aaPredicted RBP15.12■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 IARSP41252 1262 aaKnown RBP15.12■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 GPATCH11Q8N954 259 aa15.12■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 METAP2P50579 478 aaKnown RBP eCLIP15.12■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 CCDC6Q16204 474 aa15.12■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 CCDC117Q8IWD4 279 aaPredicted RBP15.12■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 CCDC61Q9Y6R9 512 aa15.12■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 PDIA4P13667 645 aaKnown RBP15.11■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 TTF1Q15361 905 aaPredicted RBP15.11■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 KRT13P13646 458 aa15.11■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 LRRC2Q9BYS8 371 aa15.11■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 SETDB2Q96T68 719 aa15.11■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 RUSC2Q8N2Y8 1516 aa15.11■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 CCDC50Q8IVM0 306 aa15.11■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 TMCO4Q5TGY1 634 aa15.11■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 ZBTB24O43167 697 aaPredicted RBP15.1■□□□□ 0.01
NPHP3-ACAD11-201ENST00000471702 ANXA1P04083 346 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms