RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 NECTIN2Q92692 538 aa25.08■■□□□ 1.61
COL9A3-206ENST00000466532 SNED1Q8TER0 1413 aa25.07■■□□□ 1.6
COL9A3-206ENST00000466532 HOXA10P31260 410 aaPredicted RBP25.07■■□□□ 1.6
COL9A3-206ENST00000466532 IARSP41252 1262 aaKnown RBP25.07■■□□□ 1.6
COL9A3-206ENST00000466532 ZNF541Q9H0D2 1346 aa25.07■■□□□ 1.6
COL9A3-206ENST00000466532 IQCA1LA6NCM1 817 aa25.06■■□□□ 1.6
COL9A3-206ENST00000466532 CHADLQ6NUI6 762 aa25.06■■□□□ 1.6
COL9A3-206ENST00000466532 JMYQ8N9B5 988 aa25.06■■□□□ 1.6
COL9A3-206ENST00000466532 TRIM35Q9UPQ4 493 aa25.06■■□□□ 1.6
COL9A3-206ENST00000466532 LAS1LQ9Y4W2 734 aaKnown RBP25.06■■□□□ 1.6
COL9A3-206ENST00000466532 CHL1O00533 1208 aa25.05■■□□□ 1.6
COL9A3-206ENST00000466532 CC2D2BQ6DHV5 1058 aa25.05■■□□□ 1.6
COL9A3-206ENST00000466532 RBM17Q96I25 401 aaKnown RBP25.05■■□□□ 1.6
COL9A3-206ENST00000466532 L3MBTL3Q96JM7 780 aaPredicted RBP25.05■■□□□ 1.6
COL9A3-206ENST00000466532 ADAMTS8Q9UP79 889 aa25.05■■□□□ 1.6
COL9A3-206ENST00000466532 POTEIP0CG38 1075 aa25.04■■□□□ 1.6
COL9A3-206ENST00000466532 POTEJP0CG39 1038 aa25.04■■□□□ 1.6
COL9A3-206ENST00000466532 AIMP1Q12904 312 aaKnown RBP25.04■■□□□ 1.6
COL9A3-206ENST00000466532 KRT24Q2M2I5 525 aa25.04■■□□□ 1.6
COL9A3-206ENST00000466532 COPS6Q7L5N1 327 aa25.04■■□□□ 1.6
COL9A3-206ENST00000466532 PSMD1Q99460 953 aa25.04■■□□□ 1.6
COL9A3-206ENST00000466532 C3orf67Q6ZVT6 689 aa25.03■■□□□ 1.6
COL9A3-206ENST00000466532 XAGE3Q8WTP9 111 aa25.03■■□□□ 1.6
COL9A3-206ENST00000466532 NLRP3Q96P20 1036 aa25.03■■□□□ 1.6
COL9A3-206ENST00000466532 CRAMP1Q96RY5 1269 aa25.03■■□□□ 1.6
COL9A3-206ENST00000466532 UTP14AQ9BVJ6 771 aaKnown RBP25.03■■□□□ 1.6
COL9A3-206ENST00000466532 TAF1P21675 1872 aa25.02■■□□□ 1.6
COL9A3-206ENST00000466532 TAF1DQ9H5J8 278 aaPredicted RBP25.02■■□□□ 1.6
COL9A3-206ENST00000466532 COL4A5P29400 1685 aa25.01■■□□□ 1.59
COL9A3-206ENST00000466532 ADAMTSL1Q8N6G6 1762 aa25.01■■□□□ 1.59
COL9A3-206ENST00000466532 FZD9O00144 591 aa25.01■■□□□ 1.59
COL9A3-206ENST00000466532 PPEF1O14829 653 aaPredicted RBP25.01■■□□□ 1.59
COL9A3-206ENST00000466532 HSP90AB3PQ58FF7 597 aa25.01■■□□□ 1.59
COL9A3-206ENST00000466532 JDP2Q8WYK2 163 aa25.01■■□□□ 1.59
COL9A3-206ENST00000466532 PRKRIP1Q9H875 184 aaPredicted RBP25.01■■□□□ 1.59
COL9A3-206ENST00000466532 DDX21Q9NR30 783 aaKnown RBP eCLIP25.01■■□□□ 1.59
COL9A3-206ENST00000466532 TCERG1O14776 1098 aaKnown RBP25■■□□□ 1.59
COL9A3-206ENST00000466532 DDX60Q8IY21 1712 aaKnown RBP25■■□□□ 1.59
COL9A3-206ENST00000466532 GRIPAP1Q4V328 841 aa24.99■■□□□ 1.59
COL9A3-206ENST00000466532 SLC10A5Q5PT55 438 aa24.99■■□□□ 1.59
COL9A3-206ENST00000466532 RNF123Q5XPI4 1314 aa24.99■■□□□ 1.59
COL9A3-206ENST00000466532 SLC51AQ86UW1 340 aa24.99■■□□□ 1.59
COL9A3-206ENST00000466532 LDHDQ86WU2 507 aa24.99■■□□□ 1.59
COL9A3-206ENST00000466532 HACL1Q9UJ83 578 aa24.99■■□□□ 1.59
COL9A3-206ENST00000466532 NLRP10Q86W26 655 aa24.98■■□□□ 1.59
COL9A3-206ENST00000466532 CHPF2Q9P2E5 772 aa24.98■■□□□ 1.59
COL9A3-206ENST00000466532 TCIRG1Q13488 830 aa24.97■■□□□ 1.59
COL9A3-206ENST00000466532 EAPPQ56P03 285 aaPredicted RBP24.97■■□□□ 1.59
COL9A3-206ENST00000466532 HDGFL1Q5TGJ6 251 aa24.97■■□□□ 1.59
COL9A3-206ENST00000466532 GPC2Q8N158 579 aa24.97■■□□□ 1.59
COL9A3-206ENST00000466532 PCNTO95613 3336 aa24.96■■□□□ 1.59
COL9A3-206ENST00000466532 ABCC4O15439 1325 aa24.95■■□□□ 1.58
COL9A3-206ENST00000466532 HOXB7P09629 217 aa24.95■■□□□ 1.58
COL9A3-206ENST00000466532 EPHX2P34913 555 aa24.95■■□□□ 1.58
COL9A3-206ENST00000466532 EIF6P56537 245 aaKnown RBP24.95■■□□□ 1.58
COL9A3-206ENST00000466532 LARGE2Q8N3Y3 721 aa24.95■■□□□ 1.58
COL9A3-206ENST00000466532 CFAP44Q96MT7 982 aa24.95■■□□□ 1.58
COL9A3-206ENST00000466532 TMX4Q9H1E5 349 aaPredicted RBP24.95■■□□□ 1.58
COL9A3-206ENST00000466532 CREBZFQ9NS37 354 aa24.95■■□□□ 1.58
COL9A3-206ENST00000466532 TRMT112Q9UI30 125 aaKnown RBP24.95■■□□□ 1.58
COL9A3-206ENST00000466532 LTBP1Q14766 1721 aa24.95■■□□□ 1.58
COL9A3-206ENST00000466532 GJA3Q9Y6H8 435 aa24.94■■□□□ 1.58
COL9A3-206ENST00000466532 HCLS1P14317 486 aaPredicted RBP24.93■■□□□ 1.58
COL9A3-206ENST00000466532 DBF4Q9UBU7 674 aaPredicted RBP24.93■■□□□ 1.58
COL9A3-206ENST00000466532 CLEC11AQ9Y240 323 aa24.93■■□□□ 1.58
COL9A3-206ENST00000466532 ATP6V0A2Q9Y487 856 aa24.93■■□□□ 1.58
COL9A3-206ENST00000466532 SH3TC1Q8TE82 1336 aa24.92■■□□□ 1.58
COL9A3-206ENST00000466532 PASKQ96RG2 1323 aa24.92■■□□□ 1.58
COL9A3-206ENST00000466532 PNMA8AQ86V59 439 aaPredicted RBP24.92■■□□□ 1.58
COL9A3-206ENST00000466532 MBIPQ9NS73 344 aa24.92■■□□□ 1.58
COL9A3-206ENST00000466532 DUSP27Q5VZP5 1158 aa24.91■■□□□ 1.58
COL9A3-206ENST00000466532 PLBD2Q8NHP8 589 aa24.91■■□□□ 1.58
COL9A3-206ENST00000466532 LRRC37AA6NMS7 1700 aa24.91■■□□□ 1.58
COL9A3-206ENST00000466532 APAF1O14727 1248 aa24.9■■□□□ 1.58
COL9A3-206ENST00000466532 PPIP5K2O43314 1243 aa24.9■■□□□ 1.58
COL9A3-206ENST00000466532 ANKRD13DQ6ZTN6 518 aa24.9■■□□□ 1.58
COL9A3-206ENST00000466532 NIM1KQ8IY84 436 aa24.9■■□□□ 1.58
COL9A3-206ENST00000466532 ZNF428Q96B54 188 aa24.9■■□□□ 1.58
COL9A3-206ENST00000466532 MKRN1Q9UHC7 482 aaKnown RBP24.9■■□□□ 1.58
COL9A3-206ENST00000466532 BBOX1O75936 387 aa24.89■■□□□ 1.58
COL9A3-206ENST00000466532 DDX46Q7L014 1031 aaKnown RBP24.89■■□□□ 1.58
COL9A3-206ENST00000466532 ITGBL1O95965 494 aaPredicted RBP24.88■■□□□ 1.57
COL9A3-206ENST00000466532 LMOD1P29536 600 aaPredicted RBP24.88■■□□□ 1.57
COL9A3-206ENST00000466532 AOC3Q16853 763 aa24.88■■□□□ 1.57
COL9A3-206ENST00000466532 SUPT20HQ8NEM7 779 aa24.88■■□□□ 1.57
COL9A3-206ENST00000466532 HYPKQ9NX55 129 aa24.88■■□□□ 1.57
COL9A3-206ENST00000466532 TRPM7Q96QT4 1865 aa24.87■■□□□ 1.57
COL9A3-206ENST00000466532 ZNF853P0CG23 659 aa24.87■■□□□ 1.57
COL9A3-206ENST00000466532 HSPA1AP0DMV8 641 aaKnown RBP24.87■■□□□ 1.57
COL9A3-206ENST00000466532 HSPA1BP0DMV9 641 aaKnown RBP24.87■■□□□ 1.57
COL9A3-206ENST00000466532 SP8Q8IXZ3 490 aa24.87■■□□□ 1.57
COL9A3-206ENST00000466532 VPS33BQ9H267 617 aa24.87■■□□□ 1.57
COL9A3-206ENST00000466532 ATP5J2-PTCD1G3V325 749 aa24.86■■□□□ 1.57
COL9A3-206ENST00000466532 CALD1Q05682 793 aaKnown RBP24.86■■□□□ 1.57
COL9A3-206ENST00000466532 GRAPQ13588 217 aa24.86■■□□□ 1.57
COL9A3-206ENST00000466532 COL13A1Q5TAT6 717 aaPredicted RBP24.86■■□□□ 1.57
COL9A3-206ENST00000466532 MAP1SQ66K74 1059 aaPredicted RBP24.86■■□□□ 1.57
COL9A3-206ENST00000466532 DPP8Q6V1X1 898 aaPredicted RBP24.86■■□□□ 1.57
COL9A3-206ENST00000466532 GRAPLQ8TC17 118 aaPredicted RBP24.86■■□□□ 1.57
COL9A3-206ENST00000466532 ISCA1Q9BUE6 129 aa24.86■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms