RNA–Protein interactions for RNA: ENST00000466285.1

COL6A1-203, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 500 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-203ENST00000466285 TAF1DQ9H5J8 278 aaPredicted RBP27.16■■□□□ 1.94
COL6A1-203ENST00000466285 EIF2S2P20042 333 aaKnown RBP27.15■■□□□ 1.94
COL6A1-203ENST00000466285 NYXQ9GZU5 481 aa27.15■■□□□ 1.94
COL6A1-203ENST00000466285 RNF123Q5XPI4 1314 aa27.15■■□□□ 1.94
COL6A1-203ENST00000466285 DDX10Q13206 875 aaKnown RBP27.14■■□□□ 1.94
COL6A1-203ENST00000466285 GIGYF2Q6Y7W6 1299 aaKnown RBP27.14■■□□□ 1.94
COL6A1-203ENST00000466285 COL4A1P02462 1669 aa27.14■■□□□ 1.93
COL6A1-203ENST00000466285 ERBB4Q15303 1308 aa27.14■■□□□ 1.93
COL6A1-203ENST00000466285 RALBP1Q15311 655 aa27.13■■□□□ 1.93
COL6A1-203ENST00000466285 RTKN2Q8IZC4 609 aa27.13■■□□□ 1.93
COL6A1-203ENST00000466285 ZNF428Q96B54 188 aa27.13■■□□□ 1.93
COL6A1-203ENST00000466285 DDX60Q8IY21 1712 aaKnown RBP27.13■■□□□ 1.93
COL6A1-203ENST00000466285 TCERG1O14776 1098 aaKnown RBP27.12■■□□□ 1.93
COL6A1-203ENST00000466285 ALDH1B1P30837 517 aa27.12■■□□□ 1.93
COL6A1-203ENST00000466285 PASKQ96RG2 1323 aa27.12■■□□□ 1.93
COL6A1-203ENST00000466285 FZD9O00144 591 aa27.11■■□□□ 1.93
COL6A1-203ENST00000466285 HSPA1AP0DMV8 641 aaKnown RBP27.11■■□□□ 1.93
COL6A1-203ENST00000466285 HSPA1BP0DMV9 641 aaKnown RBP27.11■■□□□ 1.93
COL6A1-203ENST00000466285 HOXA10P31260 410 aaPredicted RBP27.11■■□□□ 1.93
COL6A1-203ENST00000466285 RPGRQ92834 1020 aaKnown RBP27.11■■□□□ 1.93
COL6A1-203ENST00000466285 MKRN1Q9UHC7 482 aaKnown RBP27.11■■□□□ 1.93
COL6A1-203ENST00000466285 NEUROD2Q15784 382 aa27.1■■□□□ 1.93
COL6A1-203ENST00000466285 PSMD1Q99460 953 aa27.1■■□□□ 1.93
COL6A1-203ENST00000466285 MYBBP1AQ9BQG0 1328 aaKnown RBP27.1■■□□□ 1.93
COL6A1-203ENST00000466285 EAPPQ56P03 285 aaPredicted RBP27.09■■□□□ 1.93
COL6A1-203ENST00000466285 PNNQ9H307 717 aaKnown RBP27.09■■□□□ 1.93
COL6A1-203ENST00000466285 TRIM35Q9UPQ4 493 aa27.09■■□□□ 1.93
COL6A1-203ENST00000466285 IQCA1LA6NCM1 817 aa27.08■■□□□ 1.93
COL6A1-203ENST00000466285 PPEF1O14829 653 aaPredicted RBP27.08■■□□□ 1.93
COL6A1-203ENST00000466285 LDHDQ86WU2 507 aa27.08■■□□□ 1.93
COL6A1-203ENST00000466285 XAGE3Q8WTP9 111 aa27.07■■□□□ 1.92
COL6A1-203ENST00000466285 CREBZFQ9NS37 354 aa27.07■■□□□ 1.92
COL6A1-203ENST00000466285 DUOX1Q9NRD9 1551 aa27.06■■□□□ 1.92
COL6A1-203ENST00000466285 ITGBL1O95965 494 aaPredicted RBP27.06■■□□□ 1.92
COL6A1-203ENST00000466285 EPHX2P34913 555 aa27.06■■□□□ 1.92
COL6A1-203ENST00000466285 HACL1Q9UJ83 578 aa27.06■■□□□ 1.92
COL6A1-203ENST00000466285 ABCC4O15439 1325 aa27.06■■□□□ 1.92
COL6A1-203ENST00000466285 LRRC37AA6NMS7 1700 aa27.05■■□□□ 1.92
COL6A1-203ENST00000466285 AIMP1Q12904 312 aaKnown RBP27.05■■□□□ 1.92
COL6A1-203ENST00000466285 COPS6Q7L5N1 327 aa27.05■■□□□ 1.92
COL6A1-203ENST00000466285 CRAMP1Q96RY5 1269 aa27.05■■□□□ 1.92
COL6A1-203ENST00000466285 CNTNAP1P78357 1384 aa27.03■■□□□ 1.92
COL6A1-203ENST00000466285 MAP1SQ66K74 1059 aaPredicted RBP27.03■■□□□ 1.92
COL6A1-203ENST00000466285 RBM17Q96I25 401 aaKnown RBP27.03■■□□□ 1.92
COL6A1-203ENST00000466285 CHL1O00533 1208 aa27.02■■□□□ 1.92
COL6A1-203ENST00000466285 HCLS1P14317 486 aaPredicted RBP27.02■■□□□ 1.92
COL6A1-203ENST00000466285 PARP10Q53GL7 1025 aa27.02■■□□□ 1.92
COL6A1-203ENST00000466285 NLRP10Q86W26 655 aa27.02■■□□□ 1.92
COL6A1-203ENST00000466285 GPC2Q8N158 579 aa27.02■■□□□ 1.92
COL6A1-203ENST00000466285 UTP14AQ9BVJ6 771 aaKnown RBP27.02■■□□□ 1.92
COL6A1-203ENST00000466285 CHPF2Q9P2E5 772 aa27.02■■□□□ 1.92
COL6A1-203ENST00000466285 GJA3Q9Y6H8 435 aa27.02■■□□□ 1.92
COL6A1-203ENST00000466285 SCNN1DP51172 638 aa27.01■■□□□ 1.91
COL6A1-203ENST00000466285 FMR1Q06787 632 aaKnown RBP eCLIP27.01■■□□□ 1.91
COL6A1-203ENST00000466285 LMOD3Q0VAK6 560 aa27.01■■□□□ 1.91
COL6A1-203ENST00000466285 PPP1R42Q7Z4L9 355 aa27.01■■□□□ 1.91
COL6A1-203ENST00000466285 BABAM1Q9NWV8 329 aa27.01■■□□□ 1.91
COL6A1-203ENST00000466285 LAS1LQ9Y4W2 734 aaKnown RBP27.01■■□□□ 1.91
COL6A1-203ENST00000466285 LARGE2Q8N3Y3 721 aa27■■□□□ 1.91
COL6A1-203ENST00000466285 ADAMTS8Q9UP79 889 aa27■■□□□ 1.91
COL6A1-203ENST00000466285 AOC3Q16853 763 aa26.99■■□□□ 1.91
COL6A1-203ENST00000466285 SLC10A5Q5PT55 438 aa26.99■■□□□ 1.91
COL6A1-203ENST00000466285 CC2D2BQ6DHV5 1058 aa26.99■■□□□ 1.91
COL6A1-203ENST00000466285 RUNDC1Q96C34 613 aa26.99■■□□□ 1.91
COL6A1-203ENST00000466285 CLEC11AQ9Y240 323 aa26.99■■□□□ 1.91
COL6A1-203ENST00000466285 EPS15P42566 896 aa26.98■■□□□ 1.91
COL6A1-203ENST00000466285 JDP2Q8WYK2 163 aa26.98■■□□□ 1.91
COL6A1-203ENST00000466285 DDX21Q9NR30 783 aaKnown RBP eCLIP26.98■■□□□ 1.91
COL6A1-203ENST00000466285 CAPN15O75808 1086 aa26.97■■□□□ 1.91
COL6A1-203ENST00000466285 NLRP3Q96P20 1036 aa26.97■■□□□ 1.91
COL6A1-203ENST00000466285 ATP6V0A2Q9Y487 856 aa26.97■■□□□ 1.91
COL6A1-203ENST00000466285 TRPM7Q96QT4 1865 aa26.96■■□□□ 1.91
COL6A1-203ENST00000466285 PPIP5K2O43314 1243 aa26.95■■□□□ 1.9
COL6A1-203ENST00000466285 EIF6P56537 245 aaKnown RBP26.95■■□□□ 1.9
COL6A1-203ENST00000466285 TCIRG1Q13488 830 aa26.95■■□□□ 1.9
COL6A1-203ENST00000466285 TNS4Q8IZW8 715 aa26.95■■□□□ 1.9
COL6A1-203ENST00000466285 CNTROBQ8N137 903 aa26.95■■□□□ 1.9
COL6A1-203ENST00000466285 THSD7BQ9C0I4 1608 aa26.94■■□□□ 1.9
COL6A1-203ENST00000466285 VEGFBP49765 207 aa26.94■■□□□ 1.9
COL6A1-203ENST00000466285 WDR43Q15061 677 aaKnown RBP eCLIP26.94■■□□□ 1.9
COL6A1-203ENST00000466285 HDGFL1Q5TGJ6 251 aa26.94■■□□□ 1.9
COL6A1-203ENST00000466285 TMEM88BA6NKF7 163 aa26.93■■□□□ 1.9
COL6A1-203ENST00000466285 TRMT112Q9UI30 125 aaKnown RBP26.93■■□□□ 1.9
COL6A1-203ENST00000466285 FOXN1O15353 648 aa26.92■■□□□ 1.9
COL6A1-203ENST00000466285 NIM1KQ8IY84 436 aa26.92■■□□□ 1.9
COL6A1-203ENST00000466285 MBIPQ9NS73 344 aa26.92■■□□□ 1.9
COL6A1-203ENST00000466285 ATP5J2-PTCD1G3V325 749 aa26.91■■□□□ 1.9
COL6A1-203ENST00000466285 HSP90AB3PQ58FF7 597 aa26.91■■□□□ 1.9
COL6A1-203ENST00000466285 PNMA8AQ86V59 439 aaPredicted RBP26.91■■□□□ 1.9
COL6A1-203ENST00000466285 PRKRIP1Q9H875 184 aaPredicted RBP26.91■■□□□ 1.9
COL6A1-203ENST00000466285 SH3TC1Q8TE82 1336 aa26.9■■□□□ 1.9
COL6A1-203ENST00000466285 TRAF5O00463 557 aa26.9■■□□□ 1.9
COL6A1-203ENST00000466285 RTFDC1Q9BY42 306 aaPredicted RBP26.9■■□□□ 1.9
COL6A1-203ENST00000466285 DUSP27Q5VZP5 1158 aa26.89■■□□□ 1.9
COL6A1-203ENST00000466285 ISCA1Q9BUE6 129 aa26.89■■□□□ 1.9
COL6A1-203ENST00000466285 SHTN1A0MZ66 631 aa26.88■■□□□ 1.89
COL6A1-203ENST00000466285 CXCL9Q07325 125 aa26.88■■□□□ 1.89
COL6A1-203ENST00000466285 RTL5Q5HYW3 569 aaPredicted RBP26.88■■□□□ 1.89
COL6A1-203ENST00000466285 LMOD1P29536 600 aaPredicted RBP26.87■■□□□ 1.89
COL6A1-203ENST00000466285 GRAPQ13588 217 aa26.87■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms