RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 ABCC12Q96J65 1359 aa22.96■■□□□ 1.27
COL7A1-205ENST00000465238 RIC1Q4ADV7 1423 aa22.96■■□□□ 1.27
COL7A1-205ENST00000465238 GPTP24298 496 aa22.95■■□□□ 1.26
COL7A1-205ENST00000465238 GIGYF2Q6Y7W6 1299 aaKnown RBP22.95■■□□□ 1.26
COL7A1-205ENST00000465238 UBN2Q6ZU65 1347 aa22.94■■□□□ 1.26
COL7A1-205ENST00000465238 DDNO94850 711 aaPredicted RBP22.94■■□□□ 1.26
COL7A1-205ENST00000465238 ZNF853P0CG23 659 aa22.94■■□□□ 1.26
COL7A1-205ENST00000465238 ZNF34Q8IZ26 560 aa22.94■■□□□ 1.26
COL7A1-205ENST00000465238 EIF2S2P20042 333 aaKnown RBP22.93■■□□□ 1.26
COL7A1-205ENST00000465238 WDR63Q8IWG1 891 aa22.93■■□□□ 1.26
COL7A1-205ENST00000465238 MBIPQ9NS73 344 aa22.93■■□□□ 1.26
COL7A1-205ENST00000465238 IL16Q14005 1332 aa22.92■■□□□ 1.26
COL7A1-205ENST00000465238 PDIA6Q15084 440 aa22.92■■□□□ 1.26
COL7A1-205ENST00000465238 PARP10Q53GL7 1025 aa22.92■■□□□ 1.26
COL7A1-205ENST00000465238 SUSD4Q5VX71 490 aa22.92■■□□□ 1.26
COL7A1-205ENST00000465238 OLFM4Q6UX06 510 aa22.92■■□□□ 1.26
COL7A1-205ENST00000465238 LRP10Q7Z4F1 713 aa22.92■■□□□ 1.26
COL7A1-205ENST00000465238 JMYQ8N9B5 988 aa22.92■■□□□ 1.26
COL7A1-205ENST00000465238 RPGRQ92834 1020 aaKnown RBP22.92■■□□□ 1.26
COL7A1-205ENST00000465238 ZNF277Q9NRM2 450 aaPredicted RBP22.92■■□□□ 1.26
COL7A1-205ENST00000465238 IQCA1LA6NCM1 817 aa22.91■■□□□ 1.26
COL7A1-205ENST00000465238 HOXA10P31260 410 aaPredicted RBP22.91■■□□□ 1.26
COL7A1-205ENST00000465238 CC2D2BQ6DHV5 1058 aa22.91■■□□□ 1.26
COL7A1-205ENST00000465238 PPP1R42Q7Z4L9 355 aa22.91■■□□□ 1.26
COL7A1-205ENST00000465238 SCN4AP35499 1836 aa22.91■■□□□ 1.26
COL7A1-205ENST00000465238 NTSR2O95665 410 aa22.9■■□□□ 1.26
COL7A1-205ENST00000465238 L3MBTL3Q96JM7 780 aaPredicted RBP22.9■■□□□ 1.26
COL7A1-205ENST00000465238 IARSP41252 1262 aaKnown RBP22.89■■□□□ 1.25
COL7A1-205ENST00000465238 CHADLQ6NUI6 762 aa22.89■■□□□ 1.25
COL7A1-205ENST00000465238 SYNE4Q8N205 404 aa22.89■■□□□ 1.25
COL7A1-205ENST00000465238 PSMD1Q99460 953 aa22.89■■□□□ 1.25
COL7A1-205ENST00000465238 SNED1Q8TER0 1413 aa22.89■■□□□ 1.25
COL7A1-205ENST00000465238 PROSER3Q2NL68 480 aa22.88■■□□□ 1.25
COL7A1-205ENST00000465238 GRIPAP1Q4V328 841 aa22.88■■□□□ 1.25
COL7A1-205ENST00000465238 PCNTO95613 3336 aa22.88■■□□□ 1.25
COL7A1-205ENST00000465238 RBM17Q96I25 401 aaKnown RBP22.87■■□□□ 1.25
COL7A1-205ENST00000465238 CRAMP1Q96RY5 1269 aa22.87■■□□□ 1.25
COL7A1-205ENST00000465238 ANXA1P04083 346 aa22.86■■□□□ 1.25
COL7A1-205ENST00000465238 KRT24Q2M2I5 525 aa22.86■■□□□ 1.25
COL7A1-205ENST00000465238 TSR2Q969E8 191 aaKnown RBP22.86■■□□□ 1.25
COL7A1-205ENST00000465238 ANKRD36CQ5JPF3 1778 aa22.86■■□□□ 1.25
COL7A1-205ENST00000465238 RNF123Q5XPI4 1314 aa22.85■■□□□ 1.25
COL7A1-205ENST00000465238 ZNF541Q9H0D2 1346 aa22.85■■□□□ 1.25
COL7A1-205ENST00000465238 FZD9O00144 591 aa22.85■■□□□ 1.25
COL7A1-205ENST00000465238 HSP90AB3PQ58FF7 597 aa22.85■■□□□ 1.25
COL7A1-205ENST00000465238 COPS6Q7L5N1 327 aa22.85■■□□□ 1.25
COL7A1-205ENST00000465238 JDP2Q8WYK2 163 aa22.85■■□□□ 1.25
COL7A1-205ENST00000465238 NLRP3Q96P20 1036 aa22.85■■□□□ 1.25
COL7A1-205ENST00000465238 UTP14AQ9BVJ6 771 aaKnown RBP22.85■■□□□ 1.25
COL7A1-205ENST00000465238 TAF1DQ9H5J8 278 aaPredicted RBP22.85■■□□□ 1.25
COL7A1-205ENST00000465238 POTEIP0CG38 1075 aa22.84■■□□□ 1.25
COL7A1-205ENST00000465238 POTEJP0CG39 1038 aa22.84■■□□□ 1.25
COL7A1-205ENST00000465238 SLC10A5Q5PT55 438 aa22.84■■□□□ 1.25
COL7A1-205ENST00000465238 DUSP27Q5VZP5 1158 aa22.84■■□□□ 1.25
COL7A1-205ENST00000465238 LDHDQ86WU2 507 aa22.84■■□□□ 1.25
COL7A1-205ENST00000465238 NECTIN2Q92692 538 aa22.84■■□□□ 1.25
COL7A1-205ENST00000465238 DDX21Q9NR30 783 aaKnown RBP eCLIP22.84■■□□□ 1.25
COL7A1-205ENST00000465238 ZNF521Q96K83 1311 aa22.83■■□□□ 1.25
COL7A1-205ENST00000465238 HOXB7P09629 217 aa22.83■■□□□ 1.25
COL7A1-205ENST00000465238 XAGE3Q8WTP9 111 aa22.83■■□□□ 1.25
COL7A1-205ENST00000465238 MYH16Q9H6N6 1097 aa22.83■■□□□ 1.25
COL7A1-205ENST00000465238 HACL1Q9UJ83 578 aa22.83■■□□□ 1.25
COL7A1-205ENST00000465238 ELL2O00472 640 aaPredicted RBP22.82■■□□□ 1.24
COL7A1-205ENST00000465238 PPEF1O14829 653 aaPredicted RBP22.82■■□□□ 1.24
COL7A1-205ENST00000465238 GOLGA2Q08379 1002 aa22.82■■□□□ 1.24
COL7A1-205ENST00000465238 AIMP1Q12904 312 aaKnown RBP22.82■■□□□ 1.24
COL7A1-205ENST00000465238 C3orf67Q6ZVT6 689 aa22.82■■□□□ 1.24
COL7A1-205ENST00000465238 GPC2Q8N158 579 aa22.81■■□□□ 1.24
COL7A1-205ENST00000465238 TMX4Q9H1E5 349 aaPredicted RBP22.81■■□□□ 1.24
COL7A1-205ENST00000465238 FANCIQ9NVI1 1328 aa22.81■■□□□ 1.24
COL7A1-205ENST00000465238 HNRNPUQ00839 825 aaKnown RBP eCLIP22.8■■□□□ 1.24
COL7A1-205ENST00000465238 TCIRG1Q13488 830 aa22.8■■□□□ 1.24
COL7A1-205ENST00000465238 HDGFL1Q5TGJ6 251 aa22.8■■□□□ 1.24
COL7A1-205ENST00000465238 NLRP10Q86W26 655 aa22.8■■□□□ 1.24
COL7A1-205ENST00000465238 C8orf58Q8NAV2 365 aa22.8■■□□□ 1.24
COL7A1-205ENST00000465238 CREBZFQ9NS37 354 aa22.8■■□□□ 1.24
COL7A1-205ENST00000465238 EPHX2P34913 555 aa22.79■■□□□ 1.24
COL7A1-205ENST00000465238 EIF6P56537 245 aaKnown RBP22.79■■□□□ 1.24
COL7A1-205ENST00000465238 CHMP4AQ9BY43 222 aa22.79■■□□□ 1.24
COL7A1-205ENST00000465238 SPINK5Q9NQ38 1064 aaPredicted RBP22.79■■□□□ 1.24
COL7A1-205ENST00000465238 TCERG1O14776 1098 aaKnown RBP22.78■■□□□ 1.24
COL7A1-205ENST00000465238 EAPPQ56P03 285 aaPredicted RBP22.78■■□□□ 1.24
COL7A1-205ENST00000465238 PNMA8AQ86V59 439 aaPredicted RBP22.78■■□□□ 1.24
COL7A1-205ENST00000465238 LARGE2Q8N3Y3 721 aa22.78■■□□□ 1.24
COL7A1-205ENST00000465238 CHPF2Q9P2E5 772 aa22.78■■□□□ 1.24
COL7A1-205ENST00000465238 ATP6V0A2Q9Y487 856 aa22.78■■□□□ 1.24
COL7A1-205ENST00000465238 LAMB2P55268 1798 aa22.77■■□□□ 1.24
COL7A1-205ENST00000465238 E9PSI1 815 aa22.77■■□□□ 1.24
COL7A1-205ENST00000465238 DBF4Q9UBU7 674 aaPredicted RBP22.77■■□□□ 1.24
COL7A1-205ENST00000465238 TRMT112Q9UI30 125 aaKnown RBP22.77■■□□□ 1.24
COL7A1-205ENST00000465238 COL4A5P29400 1685 aa22.77■■□□□ 1.24
COL7A1-205ENST00000465238 ABCC4O15439 1325 aa22.77■■□□□ 1.24
COL7A1-205ENST00000465238 PASKQ96RG2 1323 aa22.77■■□□□ 1.24
COL7A1-205ENST00000465238 ADAMTSL1Q8N6G6 1762 aa22.76■■□□□ 1.23
COL7A1-205ENST00000465238 TWISTNBQ3B726 338 aaPredicted RBP22.76■■□□□ 1.23
COL7A1-205ENST00000465238 TSPYL6Q8N831 410 aa22.76■■□□□ 1.23
COL7A1-205ENST00000465238 VPS33BQ9H267 617 aa22.76■■□□□ 1.23
COL7A1-205ENST00000465238 SH3TC1Q8TE82 1336 aa22.76■■□□□ 1.23
COL7A1-205ENST00000465238 BBOX1O75936 387 aa22.75■■□□□ 1.23
COL7A1-205ENST00000465238 EXOSC9Q06265 439 aaKnown RBP22.75■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 92.1 ms