RNA–Protein interactions for RNA: ENST00000464362.5

HPS4-208, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 5

Gene HPS4, Length 4,277 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-208ENST00000464362 NFATC2IPQ8NCF5 419 aa10.6□□□□□ -0.71
HPS4-208ENST00000464362 CCDC47Q96A33 483 aaKnown RBP10.6□□□□□ -0.71
HPS4-208ENST00000464362 UBAC1Q9BSL1 405 aa10.6□□□□□ -0.71
HPS4-208ENST00000464362 ABCA8O94911 1581 aa10.6□□□□□ -0.71
HPS4-208ENST00000464362 FILIP1LQ4L180 1135 aa10.6□□□□□ -0.71
HPS4-208ENST00000464362 PPFIBP1Q86W92 1011 aa10.6□□□□□ -0.71
HPS4-208ENST00000464362 PLEKHF1Q96S99 279 aa10.6□□□□□ -0.71
HPS4-208ENST00000464362 TMX4Q9H1E5 349 aaPredicted RBP10.6□□□□□ -0.71
HPS4-208ENST00000464362 ZNF213O14771 459 aa10.59□□□□□ -0.71
HPS4-208ENST00000464362 DHX8Q14562 1220 aaKnown RBP10.59□□□□□ -0.71
HPS4-208ENST00000464362 CREB3L3Q68CJ9 461 aa10.59□□□□□ -0.71
HPS4-208ENST00000464362 IQSEC3Q9UPP2 1182 aaPredicted RBP10.59□□□□□ -0.71
HPS4-208ENST00000464362 MARCKSP29966 332 aaPredicted RBP10.59□□□□□ -0.71
HPS4-208ENST00000464362 SIRT2Q8IXJ6 389 aa10.59□□□□□ -0.71
HPS4-208ENST00000464362 KIF18AQ8NI77 898 aa10.59□□□□□ -0.71
HPS4-208ENST00000464362 PUS7Q96PZ0 661 aaKnown RBP10.59□□□□□ -0.71
HPS4-208ENST00000464362 NACAP1Q9BZK3 213 aa10.59□□□□□ -0.71
HPS4-208ENST00000464362 ZNF518AQ6AHZ1 1483 aa10.59□□□□□ -0.71
HPS4-208ENST00000464362 SLC3A2P08195 630 aaKnown RBP10.59□□□□□ -0.71
HPS4-208ENST00000464362 ATP2B2Q01814 1243 aa10.59□□□□□ -0.71
HPS4-208ENST00000464362 IFIT5Q13325 482 aaKnown RBP10.59□□□□□ -0.71
HPS4-208ENST00000464362 CCDC70Q6NSX1 233 aa10.59□□□□□ -0.71
HPS4-208ENST00000464362 KSR2Q6VAB6 950 aa10.59□□□□□ -0.71
HPS4-208ENST00000464362 FAM200AQ8TCP9 573 aa10.59□□□□□ -0.71
HPS4-208ENST00000464362 ERVK-7P63135 1459 aa10.59□□□□□ -0.71
HPS4-208ENST00000464362 POLR3GO15318 223 aaPredicted RBP10.58□□□□□ -0.72
HPS4-208ENST00000464362 TYRO3Q06418 890 aa10.58□□□□□ -0.72
HPS4-208ENST00000464362 LDHAL6AQ6ZMR3 332 aa10.58□□□□□ -0.72
HPS4-208ENST00000464362 KRT28Q7Z3Y7 464 aa10.58□□□□□ -0.72
HPS4-208ENST00000464362 NAPBQ9H115 298 aa10.58□□□□□ -0.72
HPS4-208ENST00000464362 RXRAP19793 462 aa10.58□□□□□ -0.72
HPS4-208ENST00000464362 ERCC4Q92889 916 aaPredicted RBP10.58□□□□□ -0.72
HPS4-208ENST00000464362 KLF18A0A0U1RQI7 1052 aa10.58□□□□□ -0.72
HPS4-208ENST00000464362 PATL2C9JE40 543 aaKnown RBP10.58□□□□□ -0.72
HPS4-208ENST00000464362 KCNQ3O43525 872 aa10.58□□□□□ -0.72
HPS4-208ENST00000464362 KCNA6P17658 529 aa10.58□□□□□ -0.72
HPS4-208ENST00000464362 APOBRQ0VD83 1088 aa10.58□□□□□ -0.72
HPS4-208ENST00000464362 UNC5CLQ8IV45 518 aa10.58□□□□□ -0.72
HPS4-208ENST00000464362 BICC1Q9H694 974 aaKnown RBP10.58□□□□□ -0.72
HPS4-208ENST00000464362 SNX14Q9Y5W7 946 aa10.58□□□□□ -0.72
HPS4-208ENST00000464362 DYNC1I1O14576 645 aa10.58□□□□□ -0.72
HPS4-208ENST00000464362 MCM5P33992 734 aa10.58□□□□□ -0.72
HPS4-208ENST00000464362 TIMM10P62072 90 aa10.58□□□□□ -0.72
HPS4-208ENST00000464362 MAST1Q9Y2H9 1570 aa10.57□□□□□ -0.72
HPS4-208ENST00000464362 NUTM2BA6NNL0 878 aaPredicted RBP10.57□□□□□ -0.72
HPS4-208ENST00000464362 NUTM2EB1AL46 878 aaPredicted RBP10.57□□□□□ -0.72
HPS4-208ENST00000464362 LMOD1P29536 600 aaPredicted RBP10.57□□□□□ -0.72
HPS4-208ENST00000464362 NUTM2AQ8IVF1 878 aaPredicted RBP10.57□□□□□ -0.72
HPS4-208ENST00000464362 FLT4P35916 1363 aa10.57□□□□□ -0.72
HPS4-208ENST00000464362 IFIT3O14879 490 aaKnown RBP10.57□□□□□ -0.72
HPS4-208ENST00000464362 SKILP12757 684 aa10.57□□□□□ -0.72
HPS4-208ENST00000464362 TRMT112Q9UI30 125 aaKnown RBP10.57□□□□□ -0.72
HPS4-208ENST00000464362 ATP10AO60312 1499 aa10.57□□□□□ -0.72
HPS4-208ENST00000464362 AOPEPQ8N6M6 819 aa10.57□□□□□ -0.72
HPS4-208ENST00000464362 LINS1Q8NG48 757 aa10.57□□□□□ -0.72
HPS4-208ENST00000464362 TOP1P11387 765 aaKnown RBP10.56□□□□□ -0.72
HPS4-208ENST00000464362 HOXC9P31274 260 aa10.56□□□□□ -0.72
HPS4-208ENST00000464362 FAM193AP78312 1265 aa10.56□□□□□ -0.72
HPS4-208ENST00000464362 CNNM3Q8NE01 707 aa10.56□□□□□ -0.72
HPS4-208ENST00000464362 ZHX3Q9H4I2 956 aa10.56□□□□□ -0.72
HPS4-208ENST00000464362 CDKL5O76039 1030 aa10.56□□□□□ -0.72
HPS4-208ENST00000464362 TFCP2Q12800 502 aa10.56□□□□□ -0.72
HPS4-208ENST00000464362 UVSSAQ2YD98 709 aa10.56□□□□□ -0.72
HPS4-208ENST00000464362 OTUD7BQ6GQQ9 843 aa10.56□□□□□ -0.72
HPS4-208ENST00000464362 INTS4Q96HW7 963 aaKnown RBP10.56□□□□□ -0.72
HPS4-208ENST00000464362 USP44Q9H0E7 712 aa10.56□□□□□ -0.72
HPS4-208ENST00000464362 NCOA5Q9HCD5 579 aaKnown RBP10.56□□□□□ -0.72
HPS4-208ENST00000464362 ABCC4O15439 1325 aa10.56□□□□□ -0.72
HPS4-208ENST00000464362 SGSM2O43147 1006 aa10.56□□□□□ -0.72
HPS4-208ENST00000464362 RANBP6O60518 1105 aaKnown RBP10.56□□□□□ -0.72
HPS4-208ENST00000464362 AXDND1Q5T1B0 1012 aaPredicted RBP10.56□□□□□ -0.72
HPS4-208ENST00000464362 GPT2Q8TD30 523 aa10.56□□□□□ -0.72
HPS4-208ENST00000464362 TRIM34Q9BYJ4 488 aa10.56□□□□□ -0.72
HPS4-208ENST00000464362 SBNO2Q9Y2G9 1366 aa10.56□□□□□ -0.72
HPS4-208ENST00000464362 CCDC171Q6TFL3 1326 aa10.56□□□□□ -0.72
HPS4-208ENST00000464362 SMTNL1A8MU46 457 aa10.55□□□□□ -0.72
HPS4-208ENST00000464362 SSBP05455 408 aaKnown RBP eCLIP10.55□□□□□ -0.72
HPS4-208ENST00000464362 ARHGAP29Q52LW3 1261 aa10.55□□□□□ -0.72
HPS4-208ENST00000464362 HELBQ8NG08 1087 aaPredicted RBP10.55□□□□□ -0.72
HPS4-208ENST00000464362 CEP89Q96ST8 783 aa10.55□□□□□ -0.72
HPS4-208ENST00000464362 NOL7Q9UMY1 257 aaKnown RBP10.55□□□□□ -0.72
HPS4-208ENST00000464362 UHRF1BP1LA0JNW5 1464 aa10.55□□□□□ -0.72
HPS4-208ENST00000464362 RTL1A6NKG5 1358 aa10.55□□□□□ -0.72
HPS4-208ENST00000464362 TNRQ92752 1358 aa10.55□□□□□ -0.72
HPS4-208ENST00000464362 GOLGA8AA7E2F4 631 aa10.55□□□□□ -0.72
HPS4-208ENST00000464362 STX1AQ16623 288 aa10.55□□□□□ -0.72
HPS4-208ENST00000464362 IFNL2Q8IZJ0 200 aa10.55□□□□□ -0.72
HPS4-208ENST00000464362 RUFY1Q96T51 708 aa10.55□□□□□ -0.72
HPS4-208ENST00000464362 SNRPA1P09661 255 aaKnown RBP10.55□□□□□ -0.72
HPS4-208ENST00000464362 TXLNAP40222 546 aa10.55□□□□□ -0.72
HPS4-208ENST00000464362 IKQ13123 557 aaPredicted RBP10.55□□□□□ -0.72
HPS4-208ENST00000464362 ZSCAN25Q6NSZ9 544 aa10.55□□□□□ -0.72
HPS4-208ENST00000464362 SMARCE1Q969G3 411 aa10.55□□□□□ -0.72
HPS4-208ENST00000464362 CGNQ9P2M7 1197 aaKnown RBP10.55□□□□□ -0.72
HPS4-208ENST00000464362 ZNF445P59923 1031 aa10.55□□□□□ -0.72
HPS4-208ENST00000464362 RNF216Q9NWF9 866 aaPredicted RBP10.55□□□□□ -0.72
HPS4-208ENST00000464362 CWC25Q9NXE8 425 aaPredicted RBP10.55□□□□□ -0.72
HPS4-208ENST00000464362 TMOD3Q9NYL9 352 aa10.55□□□□□ -0.72
HPS4-208ENST00000464362 HMGB1P09429 215 aaKnown RBP10.54□□□□□ -0.72
HPS4-208ENST00000464362 CEP135Q66GS9 1140 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms