RNA–Protein interactions for RNA: ENST00000461159.6

HDAC9-219, Transcript of histone deacetylase 9, humanhuman

TSL 2

Gene HDAC9, Length 2,557 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-219ENST00000461159 SPATA31A6Q5VVP1 1343 aa10.28□□□□□ -0.76
HDAC9-219ENST00000461159 RAI14Q9P0K7 980 aa10.27□□□□□ -0.76
HDAC9-219ENST00000461159 DISP2A7MBM2 1401 aa10.27□□□□□ -0.76
HDAC9-219ENST00000461159 PARP4Q9UKK3 1724 aaKnown RBP10.27□□□□□ -0.76
HDAC9-219ENST00000461159 PI4KAP2A4QPH2 592 aa10.27□□□□□ -0.77
HDAC9-219ENST00000461159 KCNQ4P56696 695 aa10.27□□□□□ -0.77
HDAC9-219ENST00000461159 NKX1-1Q15270 411 aaPredicted RBP10.27□□□□□ -0.77
HDAC9-219ENST00000461159 SMC5Q8IY18 1101 aa10.27□□□□□ -0.77
HDAC9-219ENST00000461159 PI4KAP1Q8N8J0 262 aa10.27□□□□□ -0.77
HDAC9-219ENST00000461159 PLEKHG2Q9H7P9 1386 aa10.27□□□□□ -0.77
HDAC9-219ENST00000461159 HEG1Q9ULI3 1381 aa10.27□□□□□ -0.77
HDAC9-219ENST00000461159 ERVV-2B6SEH9 535 aa10.26□□□□□ -0.77
HDAC9-219ENST00000461159 A1BGP04217 495 aa10.26□□□□□ -0.77
HDAC9-219ENST00000461159 RBM25P49756 843 aaKnown RBP10.26□□□□□ -0.77
HDAC9-219ENST00000461159 SIRT2Q8IXJ6 389 aa10.26□□□□□ -0.77
HDAC9-219ENST00000461159 FMNL2Q96PY5 1086 aa10.26□□□□□ -0.77
HDAC9-219ENST00000461159 MEIS3Q99687 375 aa10.26□□□□□ -0.77
HDAC9-219ENST00000461159 API5Q9BZZ5 524 aaKnown RBP10.26□□□□□ -0.77
HDAC9-219ENST00000461159 UTRNP46939 3433 aa10.26□□□□□ -0.77
HDAC9-219ENST00000461159 PRR29P0C7W0 189 aa10.26□□□□□ -0.77
HDAC9-219ENST00000461159 MAP2K1Q02750 393 aaPredicted RBP10.26□□□□□ -0.77
HDAC9-219ENST00000461159 VPS72Q15906 364 aa10.26□□□□□ -0.77
HDAC9-219ENST00000461159 SNRPA1P09661 255 aaKnown RBP10.25□□□□□ -0.77
HDAC9-219ENST00000461159 ATG3Q9NT62 314 aa10.25□□□□□ -0.77
HDAC9-219ENST00000461159 SOS1Q07889 1333 aaPredicted RBP10.25□□□□□ -0.77
HDAC9-219ENST00000461159 NRAPQ86VF7 1730 aa10.25□□□□□ -0.77
HDAC9-219ENST00000461159 DDIT3P35638 169 aa10.25□□□□□ -0.77
HDAC9-219ENST00000461159 PDIA6Q15084 440 aa10.25□□□□□ -0.77
HDAC9-219ENST00000461159 INTS3Q68E01 1043 aaKnown RBP10.25□□□□□ -0.77
HDAC9-219ENST00000461159 DBF4Q9UBU7 674 aaPredicted RBP10.25□□□□□ -0.77
HDAC9-219ENST00000461159 QTRT2Q9H974 415 aaKnown RBP10.24□□□□□ -0.77
HDAC9-219ENST00000461159 THRAP3Q9Y2W1 955 aaKnown RBP10.24□□□□□ -0.77
HDAC9-219ENST00000461159 C5P01031 1676 aa10.24□□□□□ -0.77
HDAC9-219ENST00000461159 COPS6Q7L5N1 327 aa10.24□□□□□ -0.77
HDAC9-219ENST00000461159 DNAJC10Q8IXB1 793 aa10.24□□□□□ -0.77
HDAC9-219ENST00000461159 OTUD6BQ8N6M0 293 aa10.24□□□□□ -0.77
HDAC9-219ENST00000461159 TNPO1Q92973 898 aaKnown RBP10.24□□□□□ -0.77
HDAC9-219ENST00000461159 GJD4Q96KN9 370 aaPredicted RBP10.24□□□□□ -0.77
HDAC9-219ENST00000461159 SLC4A9Q96Q91 983 aa10.24□□□□□ -0.77
HDAC9-219ENST00000461159 PTPRCP08575 1304 aa10.24□□□□□ -0.77
HDAC9-219ENST00000461159 TOGARAM1Q9Y4F4 1720 aa10.24□□□□□ -0.77
HDAC9-219ENST00000461159 ZNF500O60304 480 aaPredicted RBP10.23□□□□□ -0.77
HDAC9-219ENST00000461159 CWF19L2Q2TBE0 894 aaKnown RBP10.23□□□□□ -0.77
HDAC9-219ENST00000461159 XAGE3Q8WTP9 111 aa10.23□□□□□ -0.77
HDAC9-219ENST00000461159 CHMP4CQ96CF2 233 aa10.23□□□□□ -0.77
HDAC9-219ENST00000461159 NUCB1Q02818 461 aa10.23□□□□□ -0.77
HDAC9-219ENST00000461159 RAB3GAP1Q15042 981 aa10.23□□□□□ -0.77
HDAC9-219ENST00000461159 CASC1Q6TDU7 716 aa10.23□□□□□ -0.77
HDAC9-219ENST00000461159 BARGINQ6ZT62 677 aa10.23□□□□□ -0.77
HDAC9-219ENST00000461159 JARID2Q92833 1246 aaPredicted RBP10.23□□□□□ -0.77
HDAC9-219ENST00000461159 MAP3K2Q9Y2U5 619 aa10.23□□□□□ -0.77
HDAC9-219ENST00000461159 CEP83Q9Y592 693 aa10.23□□□□□ -0.77
HDAC9-219ENST00000461159 TNS2Q63HR2 1409 aa10.23□□□□□ -0.77
HDAC9-219ENST00000461159 ERBB4Q15303 1308 aa10.22□□□□□ -0.77
HDAC9-219ENST00000461159 NBPF26B4DH59 902 aa10.22□□□□□ -0.77
HDAC9-219ENST00000461159 GOLGA6L22H0YM25 854 aa10.22□□□□□ -0.77
HDAC9-219ENST00000461159 GOLIM4O00461 696 aa10.22□□□□□ -0.77
HDAC9-219ENST00000461159 NBPF14Q5TI25 921 aa10.22□□□□□ -0.77
HDAC9-219ENST00000461159 NBPF10Q6P3W6 841 aaKnown RBP10.22□□□□□ -0.77
HDAC9-219ENST00000461159 NBPF15Q8N660 670 aa10.22□□□□□ -0.77
HDAC9-219ENST00000461159 MRC1P22897 1456 aa10.22□□□□□ -0.77
HDAC9-219ENST00000461159 APBB1O00213 710 aa10.22□□□□□ -0.77
HDAC9-219ENST00000461159 HOXB7P09629 217 aa10.22□□□□□ -0.77
HDAC9-219ENST00000461159 DDX21Q9NR30 783 aaKnown RBP eCLIP10.22□□□□□ -0.77
HDAC9-219ENST00000461159 CACNA1FO60840 1977 aa10.22□□□□□ -0.77
HDAC9-219ENST00000461159 KCNJ4P48050 445 aa10.21□□□□□ -0.77
HDAC9-219ENST00000461159 SMIM5Q71RC9 77 aa10.21□□□□□ -0.77
HDAC9-219ENST00000461159 CDCA7Q9BWT1 371 aaPredicted RBP10.21□□□□□ -0.77
HDAC9-219ENST00000461159 BSDC1Q9NW68 430 aaPredicted RBP10.21□□□□□ -0.77
HDAC9-219ENST00000461159 ADCY9O60503 1353 aa10.21□□□□□ -0.77
HDAC9-219ENST00000461159 LOC102724159A0A0B4J2E5 919 aa10.21□□□□□ -0.78
HDAC9-219ENST00000461159 TULP2O00295 520 aa10.21□□□□□ -0.78
HDAC9-219ENST00000461159 PWP2Q15269 919 aaKnown RBP10.21□□□□□ -0.78
HDAC9-219ENST00000461159 BMP2KLQ5H9B9 411 aa10.21□□□□□ -0.78
HDAC9-219ENST00000461159 TTLL7Q6ZT98 887 aa10.21□□□□□ -0.78
HDAC9-219ENST00000461159 RIC3Q7Z5B4 369 aa10.21□□□□□ -0.78
HDAC9-219ENST00000461159 CHD1LQ86WJ1 897 aa10.21□□□□□ -0.78
HDAC9-219ENST00000461159 SEPT12Q8IYM1 358 aa10.21□□□□□ -0.78
HDAC9-219ENST00000461159 DNAAF4Q8WXU2 420 aa10.21□□□□□ -0.78
HDAC9-219ENST00000461159 MYCBPQ99417 103 aaPredicted RBP10.21□□□□□ -0.78
HDAC9-219ENST00000461159 GLI3P10071 1580 aa10.21□□□□□ -0.78
HDAC9-219ENST00000461159 ATP5J2-PTCD1G3V325 749 aa10.21□□□□□ -0.78
HDAC9-219ENST00000461159 NBPF7P0C2Y1 421 aaPredicted RBP10.21□□□□□ -0.78
HDAC9-219ENST00000461159 SSR1P43307 286 aaKnown RBP10.21□□□□□ -0.78
HDAC9-219ENST00000461159 CCDC173Q0VFZ6 552 aa10.21□□□□□ -0.78
HDAC9-219ENST00000461159 ZBTB3Q9H5J0 574 aa10.21□□□□□ -0.78
HDAC9-219ENST00000461159 NWD2Q9ULI1 1742 aa10.2□□□□□ -0.78
HDAC9-219ENST00000461159 BCL9O00512 1426 aa10.2□□□□□ -0.78
HDAC9-219ENST00000461159 CCDC66A2RUB6 948 aa10.2□□□□□ -0.78
HDAC9-219ENST00000461159 LRP10Q7Z4F1 713 aa10.2□□□□□ -0.78
HDAC9-219ENST00000461159 LNPKQ9C0E8 428 aa10.2□□□□□ -0.78
HDAC9-219ENST00000461159 TRPC5Q9UL62 973 aaPredicted RBP10.2□□□□□ -0.78
HDAC9-219ENST00000461159 ITGB4P16144 1822 aa10.2□□□□□ -0.78
HDAC9-219ENST00000461159 K7ELQ4 463 aaPredicted RBP10.2□□□□□ -0.78
HDAC9-219ENST00000461159 USP44Q9H0E7 712 aa10.2□□□□□ -0.78
HDAC9-219ENST00000461159 HYPKQ9NX55 129 aa10.2□□□□□ -0.78
HDAC9-219ENST00000461159 ATP10DQ9P241 1426 aa10.19□□□□□ -0.78
HDAC9-219ENST00000461159 NBPF5PQ86XG9 351 aaPredicted RBP10.19□□□□□ -0.78
HDAC9-219ENST00000461159 SRCIN1Q9C0H9 1055 aa10.19□□□□□ -0.78
HDAC9-219ENST00000461159 ATP6V1AP38606 617 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms