RNA–Protein interactions for RNA: ENST00000460912.6

SYNE1-215, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 1 (best)

Gene SYNE1, Length 3,664 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-215	ENST00000460912	TTC41P	Q6P2S7	1318 aa		10.73	□□□□□ -0.69
SYNE1-215	ENST00000460912	PRAMEF22	A3QJZ6	481 aa		10.73	□□□□□ -0.69
SYNE1-215	ENST00000460912	ALDH1L1	O75891	902 aa		10.73	□□□□□ -0.69
SYNE1-215	ENST00000460912	FKBP5	Q13451	457 aa	Predicted RBP	10.73	□□□□□ -0.69
SYNE1-215	ENST00000460912	HDGFL1	Q5TGJ6	251 aa		10.73	□□□□□ -0.69
SYNE1-215	ENST00000460912	RHPN1	Q8TCX5	695 aa		10.73	□□□□□ -0.69
SYNE1-215	ENST00000460912	TMX3	Q96JJ7	454 aa		10.73	□□□□□ -0.69
SYNE1-215	ENST00000460912	STK31	Q9BXU1	1019 aa		10.73	□□□□□ -0.69
SYNE1-215	ENST00000460912	DNAAF4	Q8WXU2	420 aa		10.73	□□□□□ -0.69
SYNE1-215	ENST00000460912	GOLGA6L3	A6NEY3	463 aa		10.72	□□□□□ -0.69
SYNE1-215	ENST00000460912	IGKV5-2	P06315	115 aa		10.72	□□□□□ -0.69
SYNE1-215	ENST00000460912	ZNF530	Q6P9A1	599 aa	Predicted RBP	10.72	□□□□□ -0.69
SYNE1-215	ENST00000460912	AFF2	P51816	1311 aa		10.72	□□□□□ -0.69
SYNE1-215	ENST00000460912	RFX5	P48382	616 aa	Predicted RBP	10.72	□□□□□ -0.69
SYNE1-215	ENST00000460912	COL4A1	P02462	1669 aa		10.72	□□□□□ -0.69
SYNE1-215	ENST00000460912	ANKRD31	Q8N7Z5	1873 aa		10.72	□□□□□ -0.69
SYNE1-215	ENST00000460912	HSP90AB1	P08238	724 aa	Known RBP	10.72	□□□□□ -0.69
SYNE1-215	ENST00000460912	NUCB2	P80303	420 aa		10.71	□□□□□ -0.69
SYNE1-215	ENST00000460912	GBP4	Q96PP9	640 aa		10.71	□□□□□ -0.69
SYNE1-215	ENST00000460912	NSFL1C	Q9UNZ2	370 aa	Known RBP	10.71	□□□□□ -0.69
SYNE1-215	ENST00000460912	CLCN1	P35523	988 aa		10.71	□□□□□ -0.69
SYNE1-215	ENST00000460912	GJD4	Q96KN9	370 aa	Predicted RBP	10.71	□□□□□ -0.69
SYNE1-215	ENST00000460912	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	10.71	□□□□□ -0.69
SYNE1-215	ENST00000460912	NLRP2	Q9NX02	1062 aa		10.71	□□□□□ -0.69
SYNE1-215	ENST00000460912	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	10.71	□□□□□ -0.69
SYNE1-215	ENST00000460912	PI4KAP2	A4QPH2	592 aa		10.71	□□□□□ -0.7
SYNE1-215	ENST00000460912	SASH1	O94885	1247 aa		10.71	□□□□□ -0.7
SYNE1-215	ENST00000460912	LMOD2	Q6P5Q4	547 aa		10.71	□□□□□ -0.7
SYNE1-215	ENST00000460912	PI4KAP1	Q8N8J0	262 aa		10.71	□□□□□ -0.7
SYNE1-215	ENST00000460912	RFX7	Q2KHR2	1363 aa		10.71	□□□□□ -0.7
SYNE1-215	ENST00000460912	SLC4A10	Q6U841	1118 aa		10.7	□□□□□ -0.7
SYNE1-215	ENST00000460912	KSR2	Q6VAB6	950 aa		10.7	□□□□□ -0.7
SYNE1-215	ENST00000460912	MPRIP	Q6WCQ1	1025 aa		10.7	□□□□□ -0.7
SYNE1-215	ENST00000460912	TOM1L2	Q6ZVM7	507 aa		10.7	□□□□□ -0.7
SYNE1-215	ENST00000460912	KLHL34	Q8N239	644 aa		10.7	□□□□□ -0.7
SYNE1-215	ENST00000460912	SNX14	Q9Y5W7	946 aa		10.7	□□□□□ -0.7
SYNE1-215	ENST00000460912	TNRC6C	Q9HCJ0	1690 aa	Known RBP	10.7	□□□□□ -0.7
SYNE1-215	ENST00000460912	UBTFL1	P0CB47	393 aa	Predicted RBP	10.7	□□□□□ -0.7
SYNE1-215	ENST00000460912	MCM2	P49736	904 aa		10.7	□□□□□ -0.7
SYNE1-215	ENST00000460912	RABL6	Q3YEC7	729 aa	Predicted RBP	10.7	□□□□□ -0.7
SYNE1-215	ENST00000460912	DBF4	Q9UBU7	674 aa	Predicted RBP	10.7	□□□□□ -0.7
SYNE1-215	ENST00000460912	KIF1BP	Q96EK5	621 aa		10.7	□□□□□ -0.7
SYNE1-215	ENST00000460912	COL9A3	Q14050	684 aa	Predicted RBP	10.69	□□□□□ -0.7
SYNE1-215	ENST00000460912	NECTIN1	Q15223	517 aa		10.69	□□□□□ -0.7
SYNE1-215	ENST00000460912	RASEF	Q8IZ41	740 aa		10.69	□□□□□ -0.7
SYNE1-215	ENST00000460912	ATG3	Q9NT62	314 aa		10.69	□□□□□ -0.7
SYNE1-215	ENST00000460912	MYO5A	Q9Y4I1	1855 aa	Known RBP	10.69	□□□□□ -0.7
SYNE1-215	ENST00000460912	BTBD11	A6QL63	1104 aa		10.69	□□□□□ -0.7
SYNE1-215	ENST00000460912	ZNF790	Q6PG37	636 aa		10.69	□□□□□ -0.7
SYNE1-215	ENST00000460912	PIGB	Q92521	554 aa		10.69	□□□□□ -0.7
SYNE1-215	ENST00000460912	DDX21	Q9NR30	783 aa	Known RBP eCLIP	10.69	□□□□□ -0.7
SYNE1-215	ENST00000460912	BRCA1	P38398	1863 aa	Known RBP	10.68	□□□□□ -0.7
SYNE1-215	ENST00000460912	ZSCAN23	Q3MJ62	389 aa		10.68	□□□□□ -0.7
SYNE1-215	ENST00000460912	TSGA10IP	Q3SY00	556 aa		10.68	□□□□□ -0.7
SYNE1-215	ENST00000460912	RAPGEF4	Q8WZA2	1011 aa		10.68	□□□□□ -0.7
SYNE1-215	ENST00000460912	RUFY3	Q7L099	469 aa		10.68	□□□□□ -0.7
SYNE1-215	ENST00000460912	TMEM63C	Q9P1W3	806 aa		10.68	□□□□□ -0.7
SYNE1-215	ENST00000460912	USP21	Q9UK80	565 aa		10.68	□□□□□ -0.7
SYNE1-215	ENST00000460912	ST18	O60284	1047 aa		10.67	□□□□□ -0.7
SYNE1-215	ENST00000460912	USPL1	Q5W0Q7	1092 aa		10.67	□□□□□ -0.7
SYNE1-215	ENST00000460912	SUCLG2	Q96I99	432 aa		10.67	□□□□□ -0.7
SYNE1-215	ENST00000460912	CHAMP1	Q96JM3	812 aa		10.67	□□□□□ -0.7
SYNE1-215	ENST00000460912	TM6SF1	Q9BZW5	370 aa		10.67	□□□□□ -0.7
SYNE1-215	ENST00000460912	ADAMTS2	O95450	1211 aa		10.67	□□□□□ -0.7
SYNE1-215	ENST00000460912	HYPK	Q9NX55	129 aa		10.67	□□□□□ -0.7
SYNE1-215	ENST00000460912	LINS1	Q8NG48	757 aa		10.66	□□□□□ -0.7
SYNE1-215	ENST00000460912	ZSWIM6	Q9HCJ5	1215 aa		10.66	□□□□□ -0.7
SYNE1-215	ENST00000460912	MAP3K2	Q9Y2U5	619 aa		10.66	□□□□□ -0.7
SYNE1-215	ENST00000460912	COL11A2	P13942	1736 aa	Predicted RBP	10.66	□□□□□ -0.7
SYNE1-215	ENST00000460912	NUTM1	Q86Y26	1132 aa		10.66	□□□□□ -0.7
SYNE1-215	ENST00000460912	NFATC2IP	Q8NCF5	419 aa		10.66	□□□□□ -0.7
SYNE1-215	ENST00000460912	NECTIN2	Q92692	538 aa		10.66	□□□□□ -0.7
SYNE1-215	ENST00000460912	CASC1	Q6TDU7	716 aa		10.66	□□□□□ -0.7
SYNE1-215	ENST00000460912	ARID3A	Q99856	593 aa		10.66	□□□□□ -0.7
SYNE1-215	ENST00000460912	NEURL1B	A8MQ27	555 aa		10.65	□□□□□ -0.7
SYNE1-215	ENST00000460912	EPHA10	Q5JZY3	1008 aa		10.65	□□□□□ -0.7
SYNE1-215	ENST00000460912	FUCA2	Q9BTY2	467 aa		10.65	□□□□□ -0.7
SYNE1-215	ENST00000460912	SRGAP3	O43295	1099 aa		10.65	□□□□□ -0.7
SYNE1-215	ENST00000460912	PTH1R	Q03431	593 aa		10.65	□□□□□ -0.7
SYNE1-215	ENST00000460912	IL1RAPL2	Q9NP60	686 aa		10.65	□□□□□ -0.7
SYNE1-215	ENST00000460912	STRN4	Q9NRL3	753 aa		10.65	□□□□□ -0.7
SYNE1-215	ENST00000460912	FOXD4L1	Q9NU39	408 aa		10.65	□□□□□ -0.7
SYNE1-215	ENST00000460912	ANXA1	P04083	346 aa		10.65	□□□□□ -0.7
SYNE1-215	ENST00000460912	MAP4K1	Q92918	833 aa		10.65	□□□□□ -0.7
SYNE1-215	ENST00000460912	RBSN	Q9H1K0	784 aa		10.65	□□□□□ -0.7
SYNE1-215	ENST00000460912	NBPF26	B4DH59	902 aa		10.64	□□□□□ -0.71
SYNE1-215	ENST00000460912	LARGE1	O95461	756 aa		10.64	□□□□□ -0.71
SYNE1-215	ENST00000460912	NBPF14	Q5TI25	921 aa		10.64	□□□□□ -0.71
SYNE1-215	ENST00000460912	NBPF10	Q6P3W6	841 aa	Known RBP	10.64	□□□□□ -0.71
SYNE1-215	ENST00000460912	NBPF15	Q8N660	670 aa		10.64	□□□□□ -0.71
SYNE1-215	ENST00000460912	C8orf37	Q96NL8	207 aa		10.64	□□□□□ -0.71
SYNE1-215	ENST00000460912	CHMP4A	Q9BY43	222 aa		10.64	□□□□□ -0.71
SYNE1-215	ENST00000460912	GZF1	Q9H116	711 aa	Predicted RBP	10.64	□□□□□ -0.71
SYNE1-215	ENST00000460912	TRPC5	Q9UL62	973 aa	Predicted RBP	10.64	□□□□□ -0.71
SYNE1-215	ENST00000460912	PTF1A	Q7RTS3	328 aa		10.64	□□□□□ -0.71
SYNE1-215	ENST00000460912	EAF2	Q96CJ1	260 aa	Predicted RBP	10.64	□□□□□ -0.71
SYNE1-215	ENST00000460912	ZNF496	Q96IT1	587 aa	Predicted RBP	10.64	□□□□□ -0.71
SYNE1-215	ENST00000460912	TIAM2	Q8IVF5	1701 aa		10.64	□□□□□ -0.71
SYNE1-215	ENST00000460912	CHD4	Q14839	1912 aa		10.64	□□□□□ -0.71
SYNE1-215	ENST00000460912	GRM8	O00222	908 aa		10.64	□□□□□ -0.71

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