RNA–Protein interactions for RNA: ENST00000448520.5

PDLIM2-213, Transcript of PDZ and LIM domain 2, humanhuman

TSL 3

Gene PDLIM2, Length 894 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-213ENST00000448520 PPP1R42Q7Z4L9 355 aa17.96■□□□□ 0.47
PDLIM2-213ENST00000448520 CCDC146Q8IYE0 955 aa17.96■□□□□ 0.47
PDLIM2-213ENST00000448520 ZNF34Q8IZ26 560 aa17.96■□□□□ 0.47
PDLIM2-213ENST00000448520 JDP2Q8WYK2 163 aa17.96■□□□□ 0.47
PDLIM2-213ENST00000448520 RPGRQ92834 1020 aaKnown RBP17.96■□□□□ 0.47
PDLIM2-213ENST00000448520 FZD9O00144 591 aa17.95■□□□□ 0.46
PDLIM2-213ENST00000448520 GPTP24298 496 aa17.95■□□□□ 0.46
PDLIM2-213ENST00000448520 LMOD3Q0VAK6 560 aa17.95■□□□□ 0.46
PDLIM2-213ENST00000448520 PARP10Q53GL7 1025 aa17.95■□□□□ 0.46
PDLIM2-213ENST00000448520 SUSD4Q5VX71 490 aa17.95■□□□□ 0.46
PDLIM2-213ENST00000448520 OLFM4Q6UX06 510 aa17.95■□□□□ 0.46
PDLIM2-213ENST00000448520 RBM17Q96I25 401 aaKnown RBP17.95■□□□□ 0.46
PDLIM2-213ENST00000448520 CRAMP1Q96RY5 1269 aa17.95■□□□□ 0.46
PDLIM2-213ENST00000448520 ZBTB3Q9H5J0 574 aa17.95■□□□□ 0.46
PDLIM2-213ENST00000448520 HACL1Q9UJ83 578 aa17.95■□□□□ 0.46
PDLIM2-213ENST00000448520 POTEIP0CG38 1075 aa17.94■□□□□ 0.46
PDLIM2-213ENST00000448520 POTEJP0CG39 1038 aa17.94■□□□□ 0.46
PDLIM2-213ENST00000448520 COL13A1Q5TAT6 717 aaPredicted RBP17.94■□□□□ 0.46
PDLIM2-213ENST00000448520 PNMA8AQ86V59 439 aaPredicted RBP17.94■□□□□ 0.46
PDLIM2-213ENST00000448520 RIC1Q4ADV7 1423 aa17.93■□□□□ 0.46
PDLIM2-213ENST00000448520 EIF2S2P20042 333 aaKnown RBP17.93■□□□□ 0.46
PDLIM2-213ENST00000448520 TMPOP42166 694 aaKnown RBP17.93■□□□□ 0.46
PDLIM2-213ENST00000448520 GPC2Q8N158 579 aa17.93■□□□□ 0.46
PDLIM2-213ENST00000448520 NLRP3Q96P20 1036 aa17.93■□□□□ 0.46
PDLIM2-213ENST00000448520 TMX4Q9H1E5 349 aaPredicted RBP17.93■□□□□ 0.46
PDLIM2-213ENST00000448520 UBN2Q6ZU65 1347 aa17.93■□□□□ 0.46
PDLIM2-213ENST00000448520 HSPA1AP0DMV8 641 aaKnown RBP17.92■□□□□ 0.46
PDLIM2-213ENST00000448520 HSPA1BP0DMV9 641 aaKnown RBP17.92■□□□□ 0.46
PDLIM2-213ENST00000448520 EPHX2P34913 555 aa17.92■□□□□ 0.46
PDLIM2-213ENST00000448520 EIF6P56537 245 aaKnown RBP17.92■□□□□ 0.46
PDLIM2-213ENST00000448520 SLC10A5Q5PT55 438 aa17.92■□□□□ 0.46
PDLIM2-213ENST00000448520 ZNF541Q9H0D2 1346 aa17.92■□□□□ 0.46
PDLIM2-213ENST00000448520 ABCC12Q96J65 1359 aa17.91■□□□□ 0.46
PDLIM2-213ENST00000448520 NTSR2O95665 410 aa17.91■□□□□ 0.46
PDLIM2-213ENST00000448520 PDIA6Q15084 440 aa17.91■□□□□ 0.46
PDLIM2-213ENST00000448520 EAPPQ56P03 285 aaPredicted RBP17.91■□□□□ 0.46
PDLIM2-213ENST00000448520 UTP14AQ9BVJ6 771 aaKnown RBP17.91■□□□□ 0.46
PDLIM2-213ENST00000448520 CLEC11AQ9Y240 323 aa17.91■□□□□ 0.46
PDLIM2-213ENST00000448520 PASKQ96RG2 1323 aa17.91■□□□□ 0.46
PDLIM2-213ENST00000448520 ITGBL1O95965 494 aaPredicted RBP17.9■□□□□ 0.46
PDLIM2-213ENST00000448520 HSP90AB3PQ58FF7 597 aa17.9■□□□□ 0.46
PDLIM2-213ENST00000448520 LRP10Q7Z4F1 713 aa17.9■□□□□ 0.46
PDLIM2-213ENST00000448520 VPS33BQ9H267 617 aa17.9■□□□□ 0.46
PDLIM2-213ENST00000448520 TMEM88BA6NKF7 163 aa17.89■□□□□ 0.45
PDLIM2-213ENST00000448520 MKRN1Q9UHC7 482 aaKnown RBP17.89■□□□□ 0.45
PDLIM2-213ENST00000448520 RNF123Q5XPI4 1314 aa17.89■□□□□ 0.45
PDLIM2-213ENST00000448520 SNED1Q8TER0 1413 aa17.89■□□□□ 0.45
PDLIM2-213ENST00000448520 PPEF1O14829 653 aaPredicted RBP17.88■□□□□ 0.45
PDLIM2-213ENST00000448520 TNS4Q8IZW8 715 aa17.88■□□□□ 0.45
PDLIM2-213ENST00000448520 LARGE2Q8N3Y3 721 aa17.88■□□□□ 0.45
PDLIM2-213ENST00000448520 BBOX1O75936 387 aa17.87■□□□□ 0.45
PDLIM2-213ENST00000448520 LMOD1P29536 600 aaPredicted RBP17.87■□□□□ 0.45
PDLIM2-213ENST00000448520 COPS6Q7L5N1 327 aa17.87■□□□□ 0.45
PDLIM2-213ENST00000448520 CNTROBQ8N137 903 aa17.87■□□□□ 0.45
PDLIM2-213ENST00000448520 CHL1O00533 1208 aa17.86■□□□□ 0.45
PDLIM2-213ENST00000448520 DDX21Q9NR30 783 aaKnown RBP eCLIP17.86■□□□□ 0.45
PDLIM2-213ENST00000448520 ATP6V0A2Q9Y487 856 aa17.86■□□□□ 0.45
PDLIM2-213ENST00000448520 GJA3Q9Y6H8 435 aa17.86■□□□□ 0.45
PDLIM2-213ENST00000448520 CNTNAP1P78357 1384 aa17.86■□□□□ 0.45
PDLIM2-213ENST00000448520 TCIRG1Q13488 830 aa17.85■□□□□ 0.45
PDLIM2-213ENST00000448520 PROSER3Q2NL68 480 aa17.85■□□□□ 0.45
PDLIM2-213ENST00000448520 NIM1KQ8IY84 436 aa17.85■□□□□ 0.45
PDLIM2-213ENST00000448520 SUPT20HQ8NEM7 779 aa17.85■□□□□ 0.45
PDLIM2-213ENST00000448520 RUNDC1Q96C34 613 aa17.85■□□□□ 0.45
PDLIM2-213ENST00000448520 APAF1O14727 1248 aa17.84■□□□□ 0.45
PDLIM2-213ENST00000448520 TCERG1O14776 1098 aaKnown RBP17.84■□□□□ 0.45
PDLIM2-213ENST00000448520 ANXA1P04083 346 aa17.84■□□□□ 0.45
PDLIM2-213ENST00000448520 AIMP1Q12904 312 aaKnown RBP17.84■□□□□ 0.45
PDLIM2-213ENST00000448520 NEUROD2Q15784 382 aa17.84■□□□□ 0.45
PDLIM2-213ENST00000448520 C3orf67Q6ZVT6 689 aa17.84■□□□□ 0.45
PDLIM2-213ENST00000448520 NLRP10Q86W26 655 aa17.84■□□□□ 0.45
PDLIM2-213ENST00000448520 SP8Q8IXZ3 490 aa17.84■□□□□ 0.45
PDLIM2-213ENST00000448520 XAGE3Q8WTP9 111 aa17.84■□□□□ 0.45
PDLIM2-213ENST00000448520 PPIP5K2O43314 1243 aa17.82■□□□□ 0.44
PDLIM2-213ENST00000448520 HOXB7P09629 217 aa17.82■□□□□ 0.44
PDLIM2-213ENST00000448520 DEFB115Q30KQ5 88 aa17.82■□□□□ 0.44
PDLIM2-213ENST00000448520 MAP1SQ66K74 1059 aaPredicted RBP17.82■□□□□ 0.44
PDLIM2-213ENST00000448520 USP50Q70EL3 339 aaPredicted RBP17.82■□□□□ 0.44
PDLIM2-213ENST00000448520 DDX46Q7L014 1031 aaKnown RBP17.82■□□□□ 0.44
PDLIM2-213ENST00000448520 NECTIN2Q92692 538 aa17.82■□□□□ 0.44
PDLIM2-213ENST00000448520 RTFDC1Q9BY42 306 aaPredicted RBP17.82■□□□□ 0.44
PDLIM2-213ENST00000448520 TRMT112Q9UI30 125 aaKnown RBP17.82■□□□□ 0.44
PDLIM2-213ENST00000448520 SALL2Q9Y467 1007 aaPredicted RBP17.82■□□□□ 0.44
PDLIM2-213ENST00000448520 LAS1LQ9Y4W2 734 aaKnown RBP17.82■□□□□ 0.44
PDLIM2-213ENST00000448520 SH3TC1Q8TE82 1336 aa17.81■□□□□ 0.44
PDLIM2-213ENST00000448520 VEGFBP49765 207 aa17.81■□□□□ 0.44
PDLIM2-213ENST00000448520 MPNDQ8N594 471 aa17.81■□□□□ 0.44
PDLIM2-213ENST00000448520 YTHDC1Q96MU7 727 aaKnown RBP17.81■□□□□ 0.44
PDLIM2-213ENST00000448520 ZNRF3Q9ULT6 936 aa17.81■□□□□ 0.44
PDLIM2-213ENST00000448520 TRIM35Q9UPQ4 493 aa17.81■□□□□ 0.44
PDLIM2-213ENST00000448520 ABCC4O15439 1325 aa17.8■□□□□ 0.44
PDLIM2-213ENST00000448520 RASSF10A6NK89 507 aa17.8■□□□□ 0.44
PDLIM2-213ENST00000448520 HCLS1P14317 486 aaPredicted RBP17.8■□□□□ 0.44
PDLIM2-213ENST00000448520 EPS15P42566 896 aa17.8■□□□□ 0.44
PDLIM2-213ENST00000448520 SCNN1DP51172 638 aa17.8■□□□□ 0.44
PDLIM2-213ENST00000448520 DPP8Q6V1X1 898 aaPredicted RBP17.8■□□□□ 0.44
PDLIM2-213ENST00000448520 TMC4Q7Z404 712 aa17.8■□□□□ 0.44
PDLIM2-213ENST00000448520 PLBD2Q8NHP8 589 aa17.8■□□□□ 0.44
PDLIM2-213ENST00000448520 AIDAQ96BJ3 306 aa17.8■□□□□ 0.44
PDLIM2-213ENST00000448520 ADAMTSL1Q8N6G6 1762 aa17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms