RNA–Protein interactions for RNA: ENST00000428728.5

TRIM39-209, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 1,013 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-209ENST00000428728 ADAMTS8Q9UP79 889 aa22.34■■□□□ 1.17
TRIM39-209ENST00000428728 SNED1Q8TER0 1413 aa22.33■■□□□ 1.17
TRIM39-209ENST00000428728 TAF1P21675 1872 aa22.33■■□□□ 1.17
TRIM39-209ENST00000428728 AIMP1Q12904 312 aaKnown RBP22.33■■□□□ 1.17
TRIM39-209ENST00000428728 PPP1R42Q7Z4L9 355 aa22.33■■□□□ 1.17
TRIM39-209ENST00000428728 ZNF541Q9H0D2 1346 aa22.32■■□□□ 1.16
TRIM39-209ENST00000428728 PARP10Q53GL7 1025 aa22.32■■□□□ 1.16
TRIM39-209ENST00000428728 KLRG1Q96E93 195 aa22.32■■□□□ 1.16
TRIM39-209ENST00000428728 DDX60Q8IY21 1712 aaKnown RBP22.31■■□□□ 1.16
TRIM39-209ENST00000428728 CHL1O00533 1208 aa22.31■■□□□ 1.16
TRIM39-209ENST00000428728 IARSP41252 1262 aaKnown RBP22.31■■□□□ 1.16
TRIM39-209ENST00000428728 C3orf67Q6ZVT6 689 aa22.31■■□□□ 1.16
TRIM39-209ENST00000428728 SYNE4Q8N205 404 aa22.31■■□□□ 1.16
TRIM39-209ENST00000428728 XAGE3Q8WTP9 111 aa22.31■■□□□ 1.16
TRIM39-209ENST00000428728 COL4A5P29400 1685 aa22.3■■□□□ 1.16
TRIM39-209ENST00000428728 COPS6Q7L5N1 327 aa22.3■■□□□ 1.16
TRIM39-209ENST00000428728 SLC51AQ86UW1 340 aa22.3■■□□□ 1.16
TRIM39-209ENST00000428728 TCERG1O14776 1098 aaKnown RBP22.29■■□□□ 1.16
TRIM39-209ENST00000428728 POTEIP0CG38 1075 aa22.29■■□□□ 1.16
TRIM39-209ENST00000428728 POTEJP0CG39 1038 aa22.29■■□□□ 1.16
TRIM39-209ENST00000428728 HOXA10P31260 410 aaPredicted RBP22.29■■□□□ 1.16
TRIM39-209ENST00000428728 RBM17Q96I25 401 aaKnown RBP22.29■■□□□ 1.16
TRIM39-209ENST00000428728 UTP14AQ9BVJ6 771 aaKnown RBP22.29■■□□□ 1.16
TRIM39-209ENST00000428728 CHPF2Q9P2E5 772 aa22.29■■□□□ 1.16
TRIM39-209ENST00000428728 PPEF1O14829 653 aaPredicted RBP22.28■■□□□ 1.16
TRIM39-209ENST00000428728 DDX21Q9NR30 783 aaKnown RBP eCLIP22.28■■□□□ 1.16
TRIM39-209ENST00000428728 HDGFL1Q5TGJ6 251 aa22.27■■□□□ 1.16
TRIM39-209ENST00000428728 L3MBTL3Q96JM7 780 aaPredicted RBP22.27■■□□□ 1.16
TRIM39-209ENST00000428728 PSMD1Q99460 953 aa22.27■■□□□ 1.16
TRIM39-209ENST00000428728 ADAMTSL1Q8N6G6 1762 aa22.27■■□□□ 1.16
TRIM39-209ENST00000428728 IQCA1LA6NCM1 817 aa22.26■■□□□ 1.15
TRIM39-209ENST00000428728 HSP90AB3PQ58FF7 597 aa22.26■■□□□ 1.15
TRIM39-209ENST00000428728 CC2D2BQ6DHV5 1058 aa22.26■■□□□ 1.15
TRIM39-209ENST00000428728 CHADLQ6NUI6 762 aa22.26■■□□□ 1.15
TRIM39-209ENST00000428728 NLRP3Q96P20 1036 aa22.26■■□□□ 1.15
TRIM39-209ENST00000428728 CRAMP1Q96RY5 1269 aa22.26■■□□□ 1.15
TRIM39-209ENST00000428728 NLRP10Q86W26 655 aa22.25■■□□□ 1.15
TRIM39-209ENST00000428728 ZNF428Q96B54 188 aa22.25■■□□□ 1.15
TRIM39-209ENST00000428728 LTBP1Q14766 1721 aa22.24■■□□□ 1.15
TRIM39-209ENST00000428728 JDP2Q8WYK2 163 aa22.24■■□□□ 1.15
TRIM39-209ENST00000428728 TAF1DQ9H5J8 278 aaPredicted RBP22.24■■□□□ 1.15
TRIM39-209ENST00000428728 RNF123Q5XPI4 1314 aa22.24■■□□□ 1.15
TRIM39-209ENST00000428728 FZD9O00144 591 aa22.23■■□□□ 1.15
TRIM39-209ENST00000428728 APAF1O14727 1248 aa22.23■■□□□ 1.15
TRIM39-209ENST00000428728 HCLS1P14317 486 aaPredicted RBP22.23■■□□□ 1.15
TRIM39-209ENST00000428728 TCIRG1Q13488 830 aa22.23■■□□□ 1.15
TRIM39-209ENST00000428728 EAPPQ56P03 285 aaPredicted RBP22.23■■□□□ 1.15
TRIM39-209ENST00000428728 JMYQ8N9B5 988 aa22.23■■□□□ 1.15
TRIM39-209ENST00000428728 CFAP44Q96MT7 982 aa22.23■■□□□ 1.15
TRIM39-209ENST00000428728 MBIPQ9NS73 344 aa22.23■■□□□ 1.15
TRIM39-209ENST00000428728 ABCC4O15439 1325 aa22.23■■□□□ 1.15
TRIM39-209ENST00000428728 LRRC37AA6NMS7 1700 aa22.23■■□□□ 1.15
TRIM39-209ENST00000428728 HOXB7P09629 217 aa22.22■■□□□ 1.15
TRIM39-209ENST00000428728 SLC10A5Q5PT55 438 aa22.22■■□□□ 1.15
TRIM39-209ENST00000428728 IFFO2Q5TF58 517 aa22.22■■□□□ 1.15
TRIM39-209ENST00000428728 DUSP27Q5VZP5 1158 aa22.22■■□□□ 1.15
TRIM39-209ENST00000428728 TRMT112Q9UI30 125 aaKnown RBP22.22■■□□□ 1.15
TRIM39-209ENST00000428728 HACL1Q9UJ83 578 aa22.22■■□□□ 1.15
TRIM39-209ENST00000428728 LDHDQ86WU2 507 aa22.21■■□□□ 1.15
TRIM39-209ENST00000428728 LARGE2Q8N3Y3 721 aa22.21■■□□□ 1.15
TRIM39-209ENST00000428728 SH3TC1Q8TE82 1336 aa22.21■■□□□ 1.15
TRIM39-209ENST00000428728 EPHX2P34913 555 aa22.2■■□□□ 1.14
TRIM39-209ENST00000428728 DBF4Q9UBU7 674 aaPredicted RBP22.2■■□□□ 1.14
TRIM39-209ENST00000428728 GJA3Q9Y6H8 435 aa22.2■■□□□ 1.14
TRIM39-209ENST00000428728 EIF6P56537 245 aaKnown RBP22.19■■□□□ 1.14
TRIM39-209ENST00000428728 GRIPAP1Q4V328 841 aa22.19■■□□□ 1.14
TRIM39-209ENST00000428728 GPC2Q8N158 579 aa22.19■■□□□ 1.14
TRIM39-209ENST00000428728 PLBD2Q8NHP8 589 aa22.19■■□□□ 1.14
TRIM39-209ENST00000428728 TMX4Q9H1E5 349 aaPredicted RBP22.19■■□□□ 1.14
TRIM39-209ENST00000428728 ATP6V0A2Q9Y487 856 aa22.19■■□□□ 1.14
TRIM39-209ENST00000428728 PPIP5K2O43314 1243 aa22.18■■□□□ 1.14
TRIM39-209ENST00000428728 CLEC11AQ9Y240 323 aa22.18■■□□□ 1.14
TRIM39-209ENST00000428728 ATP5J2-PTCD1G3V325 749 aa22.17■■□□□ 1.14
TRIM39-209ENST00000428728 ZNF853P0CG23 659 aa22.17■■□□□ 1.14
TRIM39-209ENST00000428728 AOC3Q16853 763 aa22.17■■□□□ 1.14
TRIM39-209ENST00000428728 ANKRD13DQ6ZTN6 518 aa22.17■■□□□ 1.14
TRIM39-209ENST00000428728 NIM1KQ8IY84 436 aa22.17■■□□□ 1.14
TRIM39-209ENST00000428728 IFT57Q9NWB7 429 aa22.17■■□□□ 1.14
TRIM39-209ENST00000428728 HYPKQ9NX55 129 aa22.17■■□□□ 1.14
TRIM39-209ENST00000428728 GNAI1P63096 354 aa22.16■■□□□ 1.14
TRIM39-209ENST00000428728 DDX46Q7L014 1031 aaKnown RBP22.16■■□□□ 1.14
TRIM39-209ENST00000428728 CREBZFQ9NS37 354 aa22.16■■□□□ 1.14
TRIM39-209ENST00000428728 COL4A1P02462 1669 aa22.16■■□□□ 1.14
TRIM39-209ENST00000428728 DUOX1Q9NRD9 1551 aa22.16■■□□□ 1.14
TRIM39-209ENST00000428728 ELL2O00472 640 aaPredicted RBP22.15■■□□□ 1.14
TRIM39-209ENST00000428728 CALD1Q05682 793 aaKnown RBP22.15■■□□□ 1.14
TRIM39-209ENST00000428728 PASKQ96RG2 1323 aa22.14■■□□□ 1.14
TRIM39-209ENST00000428728 TRPM7Q96QT4 1865 aa22.14■■□□□ 1.13
TRIM39-209ENST00000428728 LMOD1P29536 600 aaPredicted RBP22.14■■□□□ 1.13
TRIM39-209ENST00000428728 GRAPQ13588 217 aa22.14■■□□□ 1.13
TRIM39-209ENST00000428728 CCDC184Q52MB2 194 aa22.14■■□□□ 1.13
TRIM39-209ENST00000428728 RTL5Q5HYW3 569 aaPredicted RBP22.14■■□□□ 1.13
TRIM39-209ENST00000428728 GRAPLQ8TC17 118 aaPredicted RBP22.14■■□□□ 1.13
TRIM39-209ENST00000428728 ISCA1Q9BUE6 129 aa22.14■■□□□ 1.13
TRIM39-209ENST00000428728 MKRN1Q9UHC7 482 aaKnown RBP22.14■■□□□ 1.13
TRIM39-209ENST00000428728 BBOX1O75936 387 aa22.13■■□□□ 1.13
TRIM39-209ENST00000428728 DPP8Q6V1X1 898 aaPredicted RBP22.13■■□□□ 1.13
TRIM39-209ENST00000428728 PNMA8AQ86V59 439 aaPredicted RBP22.13■■□□□ 1.13
TRIM39-209ENST00000428728 FAM89AQ96GI7 184 aa22.13■■□□□ 1.13
TRIM39-209ENST00000428728 GOLGA2Q08379 1002 aa22.12■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms