RNA–Protein interactions for RNA: ENST00000378169.7

NPHP4-203, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 4,213 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-203ENST00000378169 TFCP2Q12800 502 aa15.46■□□□□ 0.07
NPHP4-203ENST00000378169 SLC4A8Q2Y0W8 1093 aa15.46■□□□□ 0.07
NPHP4-203ENST00000378169 ZCCHC11Q5TAX3 1644 aaKnown RBP15.46■□□□□ 0.07
NPHP4-203ENST00000378169 ZFYVE16Q7Z3T8 1539 aa15.46■□□□□ 0.07
NPHP4-203ENST00000378169 ANAPC15P60006 121 aa15.46■□□□□ 0.07
NPHP4-203ENST00000378169 TIMM10P62072 90 aa15.46■□□□□ 0.07
NPHP4-203ENST00000378169 ZNF496Q96IT1 587 aaPredicted RBP15.46■□□□□ 0.07
NPHP4-203ENST00000378169 KDM5AP29375 1690 aaKnown RBP15.46■□□□□ 0.07
NPHP4-203ENST00000378169 PRR36Q9H6K5 1346 aa15.46■□□□□ 0.07
NPHP4-203ENST00000378169 HMGN5P82970 282 aaKnown RBP15.46■□□□□ 0.06
NPHP4-203ENST00000378169 ZSCAN29Q8IWY8 852 aaPredicted RBP15.46■□□□□ 0.06
NPHP4-203ENST00000378169 MNS1Q8NEH6 495 aa15.46■□□□□ 0.06
NPHP4-203ENST00000378169 PDIA4P13667 645 aaKnown RBP15.45■□□□□ 0.06
NPHP4-203ENST00000378169 CHST3Q7LGC8 479 aa15.45■□□□□ 0.06
NPHP4-203ENST00000378169 IL15P40933 162 aaPredicted RBP15.45■□□□□ 0.06
NPHP4-203ENST00000378169 ZSCAN30Q86W11 494 aa15.45■□□□□ 0.06
NPHP4-203ENST00000378169 A0A0U1RQG5 324 aaPredicted RBP15.45■□□□□ 0.06
NPHP4-203ENST00000378169 A1BGP04217 495 aa15.45■□□□□ 0.06
NPHP4-203ENST00000378169 FAM89AQ96GI7 184 aa15.45■□□□□ 0.06
NPHP4-203ENST00000378169 ORC3Q9UBD5 711 aaPredicted RBP15.45■□□□□ 0.06
NPHP4-203ENST00000378169 AK2P54819 239 aa15.44■□□□□ 0.06
NPHP4-203ENST00000378169 SLC12A7Q9Y666 1083 aa15.44■□□□□ 0.06
NPHP4-203ENST00000378169 ATP6V1AP38606 617 aa15.44■□□□□ 0.06
NPHP4-203ENST00000378169 USP5P45974 858 aa15.44■□□□□ 0.06
NPHP4-203ENST00000378169 VSIG10Q8N0Z9 540 aa15.44■□□□□ 0.06
NPHP4-203ENST00000378169 SIRT1Q96EB6 747 aa15.44■□□□□ 0.06
NPHP4-203ENST00000378169 CNPY2Q9Y2B0 182 aa15.44■□□□□ 0.06
NPHP4-203ENST00000378169 EIF4A1P60842 406 aaKnown RBP15.44■□□□□ 0.06
NPHP4-203ENST00000378169 DZIP1Q86YF9 867 aaKnown RBP15.44■□□□□ 0.06
NPHP4-203ENST00000378169 CCDC43Q96MW1 224 aaKnown RBP15.44■□□□□ 0.06
NPHP4-203ENST00000378169 ROBO2Q9HCK4 1378 aa15.44■□□□□ 0.06
NPHP4-203ENST00000378169 FAM177A1Q8N128 213 aaPredicted RBP15.44■□□□□ 0.06
NPHP4-203ENST00000378169 CEP89Q96ST8 783 aa15.44■□□□□ 0.06
NPHP4-203ENST00000378169 BTG4Q9NY30 223 aa15.44■□□□□ 0.06
NPHP4-203ENST00000378169 HMG20BQ9P0W2 317 aa15.44■□□□□ 0.06
NPHP4-203ENST00000378169 NDUFB9Q9Y6M9 179 aa15.44■□□□□ 0.06
NPHP4-203ENST00000378169 XRCC6P12956 609 aaKnown RBP eCLIP15.43■□□□□ 0.06
NPHP4-203ENST00000378169 HCLS1P14317 486 aaPredicted RBP15.43■□□□□ 0.06
NPHP4-203ENST00000378169 MCMDC2Q4G0Z9 681 aa15.43■□□□□ 0.06
NPHP4-203ENST00000378169 GIMAP6Q6P9H5 292 aa15.43■□□□□ 0.06
NPHP4-203ENST00000378169 CDK5RAP3Q96JB5 506 aa15.43■□□□□ 0.06
NPHP4-203ENST00000378169 TTC41PQ6P2S7 1318 aa15.43■□□□□ 0.06
NPHP4-203ENST00000378169 ZSCAN22P10073 491 aaPredicted RBP15.43■□□□□ 0.06
NPHP4-203ENST00000378169 RBM25P49756 843 aaKnown RBP15.43■□□□□ 0.06
NPHP4-203ENST00000378169 DDB1Q16531 1140 aa15.43■□□□□ 0.06
NPHP4-203ENST00000378169 USP44Q9H0E7 712 aa15.43■□□□□ 0.06
NPHP4-203ENST00000378169 MKNK2Q9HBH9 465 aa15.43■□□□□ 0.06
NPHP4-203ENST00000378169 MYOM2P54296 1465 aa15.43■□□□□ 0.06
NPHP4-203ENST00000378169 GOLGA8AA7E2F4 631 aa15.43■□□□□ 0.06
NPHP4-203ENST00000378169 SLC9C2Q5TAH2 1124 aa15.43■□□□□ 0.06
NPHP4-203ENST00000378169 GOLGA6L1Q8N7Z2 621 aa15.43■□□□□ 0.06
NPHP4-203ENST00000378169 PHF23Q9BUL5 403 aaPredicted RBP15.43■□□□□ 0.06
NPHP4-203ENST00000378169 NAP1L1P55209 391 aaKnown RBP15.42■□□□□ 0.06
NPHP4-203ENST00000378169 ZSCAN23Q3MJ62 389 aa15.42■□□□□ 0.06
NPHP4-203ENST00000378169 NOL7Q9UMY1 257 aaKnown RBP15.42■□□□□ 0.06
NPHP4-203ENST00000378169 ABCC4O15439 1325 aa15.42■□□□□ 0.06
NPHP4-203ENST00000378169 BIN1O00499 593 aa15.42■□□□□ 0.06
NPHP4-203ENST00000378169 SOGA3Q5TF21 947 aa15.42■□□□□ 0.06
NPHP4-203ENST00000378169 CDC5LQ99459 802 aaKnown RBP15.42■□□□□ 0.06
NPHP4-203ENST00000378169 PAG1Q9NWQ8 432 aa15.42■□□□□ 0.06
NPHP4-203ENST00000378169 KLF18A0A0U1RQI7 1052 aa15.41■□□□□ 0.06
NPHP4-203ENST00000378169 DNM1Q05193 864 aaKnown RBP15.41■□□□□ 0.06
NPHP4-203ENST00000378169 RAB3GAP1Q15042 981 aa15.41■□□□□ 0.06
NPHP4-203ENST00000378169 FILIP1LQ4L180 1135 aa15.41■□□□□ 0.06
NPHP4-203ENST00000378169 TMEM67Q5HYA8 995 aa15.41■□□□□ 0.06
NPHP4-203ENST00000378169 IQCA1Q86XH1 822 aa15.41■□□□□ 0.06
NPHP4-203ENST00000378169 FSIP1Q8NA03 581 aa15.41■□□□□ 0.06
NPHP4-203ENST00000378169 NIP7Q9Y221 180 aaKnown RBP eCLIP15.41■□□□□ 0.06
NPHP4-203ENST00000378169 Q6ZUG5 572 aa15.41■□□□□ 0.06
NPHP4-203ENST00000378169 CREB3L3Q68CJ9 461 aa15.41■□□□□ 0.06
NPHP4-203ENST00000378169 USP48Q86UV5 1035 aa15.41■□□□□ 0.06
NPHP4-203ENST00000378169 DZIP3Q86Y13 1208 aaKnown RBP15.41■□□□□ 0.06
NPHP4-203ENST00000378169 WASF1Q92558 559 aa15.41■□□□□ 0.06
NPHP4-203ENST00000378169 SUCLG2Q96I99 432 aa15.41■□□□□ 0.06
NPHP4-203ENST00000378169 DBNDD2Q9BQY9 259 aa15.41■□□□□ 0.06
NPHP4-203ENST00000378169 PLXNC1O60486 1568 aa15.41■□□□□ 0.06
NPHP4-203ENST00000378169 NCOA7Q8NI08 942 aa15.41■□□□□ 0.06
NPHP4-203ENST00000378169 ZHX3Q9H4I2 956 aa15.41■□□□□ 0.06
NPHP4-203ENST00000378169 GSPT1P15170 499 aaKnown RBP15.4■□□□□ 0.06
NPHP4-203ENST00000378169 IARSP41252 1262 aaKnown RBP15.4■□□□□ 0.06
NPHP4-203ENST00000378169 UBE2HP62256 183 aa15.4■□□□□ 0.06
NPHP4-203ENST00000378169 ZNF594Q96JF6 807 aaPredicted RBP15.4■□□□□ 0.06
NPHP4-203ENST00000378169 OFD1O75665 1012 aa15.4■□□□□ 0.06
NPHP4-203ENST00000378169 SSBP05455 408 aaKnown RBP eCLIP15.4■□□□□ 0.06
NPHP4-203ENST00000378169 TTF1Q15361 905 aaPredicted RBP15.4■□□□□ 0.06
NPHP4-203ENST00000378169 KLHL10Q6JEL2 608 aa15.4■□□□□ 0.06
NPHP4-203ENST00000378169 CTCFLQ8NI51 663 aaPredicted RBP15.4■□□□□ 0.06
NPHP4-203ENST00000378169 SLC52A2Q9HAB3 445 aa15.4■□□□□ 0.06
NPHP4-203ENST00000378169 ZNF219Q9P2Y4 722 aaPredicted RBP15.4■□□□□ 0.06
NPHP4-203ENST00000378169 CCDC196A0A1B0GTZ2 297 aa15.39■□□□□ 0.05
NPHP4-203ENST00000378169 HOXB7P09629 217 aa15.39■□□□□ 0.05
NPHP4-203ENST00000378169 CFAP100Q494V2 611 aa15.39■□□□□ 0.05
NPHP4-203ENST00000378169 C6orf229H3BNL8 230 aa15.39■□□□□ 0.05
NPHP4-203ENST00000378169 ISM2Q6H9L7 571 aa15.39■□□□□ 0.05
NPHP4-203ENST00000378169 CCDC129Q6ZRS4 1044 aa15.39■□□□□ 0.05
NPHP4-203ENST00000378169 FAM227BQ96M60 508 aa15.39■□□□□ 0.05
NPHP4-203ENST00000378169 C8orf37Q96NL8 207 aa15.39■□□□□ 0.05
NPHP4-203ENST00000378169 IRS4O14654 1257 aaPredicted RBP15.39■□□□□ 0.05
NPHP4-203ENST00000378169 MCM5P33992 734 aa15.39■□□□□ 0.05
NPHP4-203ENST00000378169 METTL22Q9BUU2 404 aaPredicted RBP15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms