RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 PCDH11XQ9BZA7 1347 aa4.78□□□□□ -1.64
USH2A-202ENST00000366942 PCDH11YQ9BZA8 1340 aa4.78□□□□□ -1.64
USH2A-202ENST00000366942 CCDC14Q49A88 953 aa4.78□□□□□ -1.64
USH2A-202ENST00000366942 GPATCH4Q5T3I0 446 aaKnown RBP4.78□□□□□ -1.64
USH2A-202ENST00000366942 CFAP58Q5T655 872 aa4.78□□□□□ -1.64
USH2A-202ENST00000366942 MSANTD4Q8NCY6 345 aa4.78□□□□□ -1.64
USH2A-202ENST00000366942 GTF3C2Q8WUA4 911 aaPredicted RBP4.78□□□□□ -1.64
USH2A-202ENST00000366942 AAASQ9NRG9 546 aa4.78□□□□□ -1.64
USH2A-202ENST00000366942 UQCRFS1P1P0C7P4 283 aa4.78□□□□□ -1.64
USH2A-202ENST00000366942 PLCB2Q00722 1185 aa4.78□□□□□ -1.64
USH2A-202ENST00000366942 WASF1Q92558 559 aa4.78□□□□□ -1.64
USH2A-202ENST00000366942 CCDC196A0A1B0GTZ2 297 aa4.78□□□□□ -1.64
USH2A-202ENST00000366942 CDKL5O76039 1030 aa4.78□□□□□ -1.64
USH2A-202ENST00000366942 INF2Q27J81 1249 aa4.78□□□□□ -1.64
USH2A-202ENST00000366942 TMEM266Q2M3C6 531 aa4.78□□□□□ -1.64
USH2A-202ENST00000366942 TCP11L1Q9NUJ3 509 aa4.78□□□□□ -1.64
USH2A-202ENST00000366942 THRAP3Q9Y2W1 955 aaKnown RBP4.78□□□□□ -1.64
USH2A-202ENST00000366942 KCNQ2O43526 872 aa4.77□□□□□ -1.65
USH2A-202ENST00000366942 TBC1D8O95759 1140 aa4.77□□□□□ -1.65
USH2A-202ENST00000366942 EZRP15311 586 aaKnown RBP4.77□□□□□ -1.65
USH2A-202ENST00000366942 TBC1D9Q6ZT07 1266 aa4.77□□□□□ -1.65
USH2A-202ENST00000366942 CTCFLQ8NI51 663 aaPredicted RBP4.77□□□□□ -1.65
USH2A-202ENST00000366942 ERMNQ8TAM6 284 aa4.77□□□□□ -1.65
USH2A-202ENST00000366942 IMPG2Q9BZV3 1241 aa4.77□□□□□ -1.65
USH2A-202ENST00000366942 MAP3K20Q9NYL2 800 aaKnown RBP4.77□□□□□ -1.65
USH2A-202ENST00000366942 SAMM50Q9Y512 469 aa4.77□□□□□ -1.65
USH2A-202ENST00000366942 SNAPC4Q5SXM2 1469 aa4.77□□□□□ -1.65
USH2A-202ENST00000366942 MVPQ14764 893 aaKnown RBP4.77□□□□□ -1.65
USH2A-202ENST00000366942 CHRNA2Q15822 529 aa4.77□□□□□ -1.65
USH2A-202ENST00000366942 DAAM2Q86T65 1068 aa4.77□□□□□ -1.65
USH2A-202ENST00000366942 SYMPKQ92797 1274 aaKnown RBP4.77□□□□□ -1.65
USH2A-202ENST00000366942 MAP7D2Q96T17 732 aa4.77□□□□□ -1.65
USH2A-202ENST00000366942 ZNF157P51786 506 aaPredicted RBP4.77□□□□□ -1.65
USH2A-202ENST00000366942 SLC27A3Q5K4L6 730 aa4.77□□□□□ -1.65
USH2A-202ENST00000366942 GADL1Q6ZQY3 521 aa4.77□□□□□ -1.65
USH2A-202ENST00000366942 MCM10Q7L590 875 aa4.77□□□□□ -1.65
USH2A-202ENST00000366942 SUGP1Q8IWZ8 645 aaKnown RBP4.77□□□□□ -1.65
USH2A-202ENST00000366942 CCDC89Q8N998 374 aa4.77□□□□□ -1.65
USH2A-202ENST00000366942 MPHOSPH9Q99550 1183 aa4.77□□□□□ -1.65
USH2A-202ENST00000366942 RBM19Q9Y4C8 960 aaKnown RBP4.77□□□□□ -1.65
USH2A-202ENST00000366942 FRMD3A2A2Y4 597 aa4.77□□□□□ -1.65
USH2A-202ENST00000366942 CCDC69A6NI79 296 aa4.77□□□□□ -1.65
USH2A-202ENST00000366942 PRMT3O60678 531 aa4.77□□□□□ -1.65
USH2A-202ENST00000366942 GNAT1P11488 350 aa4.77□□□□□ -1.65
USH2A-202ENST00000366942 KIF5BP33176 963 aa4.77□□□□□ -1.65
USH2A-202ENST00000366942 TTF1Q15361 905 aaPredicted RBP4.77□□□□□ -1.65
USH2A-202ENST00000366942 KIF4BQ2VIQ3 1234 aa4.77□□□□□ -1.65
USH2A-202ENST00000366942 HAUS6Q7Z4H7 955 aa4.77□□□□□ -1.65
USH2A-202ENST00000366942 ZNF354CQ86Y25 554 aa4.77□□□□□ -1.65
USH2A-202ENST00000366942 CC2D2AQ9P2K1 1620 aa4.77□□□□□ -1.65
USH2A-202ENST00000366942 F8W8V4 182 aa4.77□□□□□ -1.65
USH2A-202ENST00000366942 ECM2O94769 699 aaPredicted RBP4.77□□□□□ -1.65
USH2A-202ENST00000366942 ZBTB7AO95365 584 aa4.77□□□□□ -1.65
USH2A-202ENST00000366942 CCDC181Q5TID7 509 aa4.77□□□□□ -1.65
USH2A-202ENST00000366942 HSCBQ8IWL3 235 aa4.77□□□□□ -1.65
USH2A-202ENST00000366942 CDAN1Q8IWY9 1227 aa4.77□□□□□ -1.65
USH2A-202ENST00000366942 DRC7Q8IY82 874 aa4.77□□□□□ -1.65
USH2A-202ENST00000366942 SCG3Q8WXD2 468 aaKnown RBP4.77□□□□□ -1.65
USH2A-202ENST00000366942 FOXD4L1Q9NU39 408 aa4.77□□□□□ -1.65
USH2A-202ENST00000366942 NINLQ9Y2I6 1382 aa4.76□□□□□ -1.65
USH2A-202ENST00000366942 SNRPA1P09661 255 aaKnown RBP4.76□□□□□ -1.65
USH2A-202ENST00000366942 PSMA5P28066 241 aa4.76□□□□□ -1.65
USH2A-202ENST00000366942 BPIFB4P59827 614 aa4.76□□□□□ -1.65
USH2A-202ENST00000366942 ANKRD24Q8TF21 1146 aa4.76□□□□□ -1.65
USH2A-202ENST00000366942 CACYBPQ9HB71 228 aaKnown RBP4.76□□□□□ -1.65
USH2A-202ENST00000366942 TPCN1Q9ULQ1 816 aa4.76□□□□□ -1.65
USH2A-202ENST00000366942 HSPA1LP34931 641 aa4.76□□□□□ -1.65
USH2A-202ENST00000366942 USP14P54578 494 aa4.76□□□□□ -1.65
USH2A-202ENST00000366942 ARRDC4Q8NCT1 418 aa4.76□□□□□ -1.65
USH2A-202ENST00000366942 TNNQ9UQP3 1299 aa4.76□□□□□ -1.65
USH2A-202ENST00000366942 PLEKHG3A1L390 1219 aa4.76□□□□□ -1.65
USH2A-202ENST00000366942 M0R2C6 588 aa4.76□□□□□ -1.65
USH2A-202ENST00000366942 MARCKSP29966 332 aaPredicted RBP4.76□□□□□ -1.65
USH2A-202ENST00000366942 GNAQP50148 359 aa4.76□□□□□ -1.65
USH2A-202ENST00000366942 NUCB1Q02818 461 aa4.76□□□□□ -1.65
USH2A-202ENST00000366942 CCDC15Q0P6D6 951 aa4.76□□□□□ -1.65
USH2A-202ENST00000366942 TRIM47Q96LD4 638 aa4.76□□□□□ -1.65
USH2A-202ENST00000366942 MTFR1LQ9H019 292 aa4.76□□□□□ -1.65
USH2A-202ENST00000366942 SEPT11Q9NVA2 429 aaKnown RBP4.76□□□□□ -1.65
USH2A-202ENST00000366942 FBXL21Q9UKT6 434 aa4.76□□□□□ -1.65
USH2A-202ENST00000366942 PPIP5K1Q6PFW1 1433 aa4.76□□□□□ -1.65
USH2A-202ENST00000366942 TNPO2O14787 897 aaKnown RBP4.76□□□□□ -1.65
USH2A-202ENST00000366942 XPOTO43592 962 aaKnown RBP4.76□□□□□ -1.65
USH2A-202ENST00000366942 XPAP23025 273 aaPredicted RBP4.76□□□□□ -1.65
USH2A-202ENST00000366942 APBA1Q02410 837 aa4.76□□□□□ -1.65
USH2A-202ENST00000366942 JMYQ8N9B5 988 aa4.76□□□□□ -1.65
USH2A-202ENST00000366942 HELBQ8NG08 1087 aaPredicted RBP4.76□□□□□ -1.65
USH2A-202ENST00000366942 GSDMBQ8TAX9 411 aa4.76□□□□□ -1.65
USH2A-202ENST00000366942 ALS2CR12Q96Q35 445 aa4.76□□□□□ -1.65
USH2A-202ENST00000366942 TSEN34Q9BSV6 310 aaKnown RBP4.76□□□□□ -1.65
USH2A-202ENST00000366942 CEP83Q9Y592 693 aa4.76□□□□□ -1.65
USH2A-202ENST00000366942 MROH2BQ7Z745 1585 aa4.76□□□□□ -1.65
USH2A-202ENST00000366942 CASTP20810 708 aaKnown RBP4.76□□□□□ -1.65
USH2A-202ENST00000366942 GTF2F1P35269 517 aaKnown RBP eCLIP4.76□□□□□ -1.65
USH2A-202ENST00000366942 TAF1CQ15572 869 aaPredicted RBP4.76□□□□□ -1.65
USH2A-202ENST00000366942 APOBEC3FQ8IUX4 373 aaKnown RBP4.76□□□□□ -1.65
USH2A-202ENST00000366942 COPRSQ9NQ92 184 aa4.76□□□□□ -1.65
USH2A-202ENST00000366942 PCDHB13Q9Y5F0 798 aa4.76□□□□□ -1.65
USH2A-202ENST00000366942 LAMC3Q9Y6N6 1575 aa4.75□□□□□ -1.65
USH2A-202ENST00000366942 MEI4A8MW99 385 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms