RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 TBC1D2Q9BYX2 928 aa15.21■□□□□ 0.02
COL6A3-202ENST00000347401 VCX3BQ9H321 246 aa15.21■□□□□ 0.02
COL6A3-202ENST00000347401 SARNPP82979 210 aaKnown RBP15.2■□□□□ 0.02
COL6A3-202ENST00000347401 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.2■□□□□ 0.02
COL6A3-202ENST00000347401 PIBF1Q8WXW3 757 aa15.2■□□□□ 0.02
COL6A3-202ENST00000347401 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.2■□□□□ 0.02
COL6A3-202ENST00000347401 CCDC14Q49A88 953 aa15.2■□□□□ 0.02
COL6A3-202ENST00000347401 FAM76AQ8TAV0 307 aa15.2■□□□□ 0.02
COL6A3-202ENST00000347401 PPP1R2P41236 205 aa15.2■□□□□ 0.02
COL6A3-202ENST00000347401 CAMK4Q16566 473 aa15.2■□□□□ 0.02
COL6A3-202ENST00000347401 NUP133Q8WUM0 1156 aa15.2■□□□□ 0.02
COL6A3-202ENST00000347401 GBP1P32455 592 aa15.2■□□□□ 0.02
COL6A3-202ENST00000347401 TDRD12Q587J7 1177 aaKnown RBP15.2■□□□□ 0.02
COL6A3-202ENST00000347401 RBM27Q9P2N5 1060 aaKnown RBP15.19■□□□□ 0.02
COL6A3-202ENST00000347401 TSNAXIP1Q2TAA8 658 aa15.19■□□□□ 0.02
COL6A3-202ENST00000347401 PRDM10Q9NQV6 1147 aa15.19■□□□□ 0.02
COL6A3-202ENST00000347401 SSRP1Q08945 709 aaKnown RBP15.19■□□□□ 0.02
COL6A3-202ENST00000347401 ARHGAP24Q8N264 748 aa15.19■□□□□ 0.02
COL6A3-202ENST00000347401 FSIP1Q8NA03 581 aa15.19■□□□□ 0.02
COL6A3-202ENST00000347401 PPFIBP2Q8ND30 876 aa15.19■□□□□ 0.02
COL6A3-202ENST00000347401 FAM184BQ9ULE4 1060 aa15.19■□□□□ 0.02
COL6A3-202ENST00000347401 SPG7Q9UQ90 795 aa15.19■□□□□ 0.02
COL6A3-202ENST00000347401 UBASH3AP57075 661 aa15.19■□□□□ 0.02
COL6A3-202ENST00000347401 CATIPQ7Z7H3 387 aa15.19■□□□□ 0.02
COL6A3-202ENST00000347401 SLC52A1Q9NWF4 448 aa15.19■□□□□ 0.02
COL6A3-202ENST00000347401 ZHX1Q9UKY1 873 aaPredicted RBP15.19■□□□□ 0.02
COL6A3-202ENST00000347401 PPFIA3O75145 1194 aa15.19■□□□□ 0.02
COL6A3-202ENST00000347401 DHX37Q8IY37 1157 aaKnown RBP15.19■□□□□ 0.02
COL6A3-202ENST00000347401 NFE2L2Q16236 605 aa15.18■□□□□ 0.02
COL6A3-202ENST00000347401 TMTC2Q8N394 836 aa15.18■□□□□ 0.02
COL6A3-202ENST00000347401 CDCA7LQ96GN5 454 aa15.18■□□□□ 0.02
COL6A3-202ENST00000347401 MTIF2P46199 727 aaKnown RBP15.18■□□□□ 0.02
COL6A3-202ENST00000347401 SLC12A7Q9Y666 1083 aa15.18■□□□□ 0.02
COL6A3-202ENST00000347401 ATF3P18847 181 aa15.18■□□□□ 0.02
COL6A3-202ENST00000347401 TRHP20396 242 aaPredicted RBP15.18■□□□□ 0.02
COL6A3-202ENST00000347401 IRX4P78413 519 aa15.18■□□□□ 0.02
COL6A3-202ENST00000347401 SKILP12757 684 aa15.18■□□□□ 0.02
COL6A3-202ENST00000347401 VCXQ9H320 206 aa15.18■□□□□ 0.02
COL6A3-202ENST00000347401 MTRF1LQ9UGC7 380 aaKnown RBP15.17■□□□□ 0.02
COL6A3-202ENST00000347401 KIF5AQ12840 1032 aa15.17■□□□□ 0.02
COL6A3-202ENST00000347401 RNF168Q8IYW5 571 aaPredicted RBP15.17■□□□□ 0.02
COL6A3-202ENST00000347401 CFTRP13569 1480 aa15.17■□□□□ 0.02
COL6A3-202ENST00000347401 PHLDB2Q86SQ0 1253 aa15.17■□□□□ 0.02
COL6A3-202ENST00000347401 INTS4Q96HW7 963 aaKnown RBP15.17■□□□□ 0.02
COL6A3-202ENST00000347401 RASSF2P50749 326 aa15.17■□□□□ 0.02
COL6A3-202ENST00000347401 ANKRD24Q8TF21 1146 aa15.17■□□□□ 0.02
COL6A3-202ENST00000347401 CCDC114Q96M63 670 aa15.17■□□□□ 0.02
COL6A3-202ENST00000347401 HYPKQ9NX55 129 aa15.17■□□□□ 0.02
COL6A3-202ENST00000347401 TRIM14Q14142 442 aa15.17■□□□□ 0.02
COL6A3-202ENST00000347401 STMN2Q93045 179 aa15.17■□□□□ 0.02
COL6A3-202ENST00000347401 RAD50Q92878 1312 aa15.17■□□□□ 0.02
COL6A3-202ENST00000347401 GIGYF1O75420 1035 aaPredicted RBP15.17■□□□□ 0.02
COL6A3-202ENST00000347401 BICDL2A1A5D9 508 aa15.17■□□□□ 0.02
COL6A3-202ENST00000347401 CNGA4Q8IV77 575 aa15.17■□□□□ 0.02
COL6A3-202ENST00000347401 PABPN1LA6NDY0 278 aaKnown RBP15.16■□□□□ 0.02
COL6A3-202ENST00000347401 BCAR3O75815 825 aa15.16■□□□□ 0.02
COL6A3-202ENST00000347401 MATR3P43243 847 aaKnown RBP eCLIP15.16■□□□□ 0.02
COL6A3-202ENST00000347401 RSPH14Q9UHP6 348 aa15.16■□□□□ 0.02
COL6A3-202ENST00000347401 SSBP05455 408 aaKnown RBP eCLIP15.16■□□□□ 0.02
COL6A3-202ENST00000347401 NAPBQ9H115 298 aa15.16■□□□□ 0.02
COL6A3-202ENST00000347401 TATP17735 454 aaPredicted RBP15.16■□□□□ 0.02
COL6A3-202ENST00000347401 FKBP4Q02790 459 aaKnown RBP eCLIP15.16■□□□□ 0.02
COL6A3-202ENST00000347401 HDAC1Q13547 482 aaPredicted RBP15.16■□□□□ 0.02
COL6A3-202ENST00000347401 RAB3IL1Q8TBN0 382 aa15.16■□□□□ 0.02
COL6A3-202ENST00000347401 CPLX4Q7Z7G2 160 aa15.16■□□□□ 0.02
COL6A3-202ENST00000347401 CCDC96Q2M329 555 aa15.16■□□□□ 0.02
COL6A3-202ENST00000347401 KLHL10Q6JEL2 608 aa15.16■□□□□ 0.02
COL6A3-202ENST00000347401 BICDL1Q6ZP65 573 aa15.16■□□□□ 0.02
COL6A3-202ENST00000347401 CCDC194A0A1B0GVG4 234 aa15.16■□□□□ 0.02
COL6A3-202ENST00000347401 ZBTB17Q13105 803 aa15.15■□□□□ 0.02
COL6A3-202ENST00000347401 IQCDQ96DY2 449 aa15.15■□□□□ 0.02
COL6A3-202ENST00000347401 BCAP29Q9UHQ4 241 aa15.15■□□□□ 0.02
COL6A3-202ENST00000347401 MAP7D1Q3KQU3 841 aa15.15■□□□□ 0.02
COL6A3-202ENST00000347401 NBPF7P0C2Y1 421 aaPredicted RBP15.15■□□□□ 0.02
COL6A3-202ENST00000347401 ZBTB16Q05516 673 aa15.15■□□□□ 0.02
COL6A3-202ENST00000347401 MAP3K12Q12852 859 aa15.15■□□□□ 0.02
COL6A3-202ENST00000347401 MICALL1Q8N3F8 863 aa15.15■□□□□ 0.02
COL6A3-202ENST00000347401 ERO1AQ96HE7 468 aa15.15■□□□□ 0.02
COL6A3-202ENST00000347401 MCM6Q14566 821 aa15.15■□□□□ 0.02
COL6A3-202ENST00000347401 NBPF8Q3BBV2 869 aa15.15■□□□□ 0.02
COL6A3-202ENST00000347401 CUL5Q93034 780 aa15.15■□□□□ 0.02
COL6A3-202ENST00000347401 ZNF652Q9Y2D9 606 aa15.15■□□□□ 0.02
COL6A3-202ENST00000347401 SSX2IPQ9Y2D8 614 aa15.15■□□□□ 0.02
COL6A3-202ENST00000347401 ZSCAN22P10073 491 aaPredicted RBP15.14■□□□□ 0.01
COL6A3-202ENST00000347401 CCDC174Q6PII3 467 aa15.14■□□□□ 0.01
COL6A3-202ENST00000347401 ERMNQ8TAM6 284 aa15.14■□□□□ 0.01
COL6A3-202ENST00000347401 RPGRIP1Q96KN7 1286 aa15.14■□□□□ 0.01
COL6A3-202ENST00000347401 SYTL4Q96C24 671 aaPredicted RBP15.14■□□□□ 0.01
COL6A3-202ENST00000347401 TNNC1P63316 161 aa15.14■□□□□ 0.01
COL6A3-202ENST00000347401 ASXL1Q8IXJ9 1541 aa15.14■□□□□ 0.01
COL6A3-202ENST00000347401 NOP2P46087 812 aaKnown RBP15.14■□□□□ 0.01
COL6A3-202ENST00000347401 CCDC160A6NGH7 325 aa15.14■□□□□ 0.01
COL6A3-202ENST00000347401 SYKP43405 635 aa15.14■□□□□ 0.01
COL6A3-202ENST00000347401 CEP57Q86XR8 500 aa15.14■□□□□ 0.01
COL6A3-202ENST00000347401 KLHL34Q8N239 644 aa15.14■□□□□ 0.01
COL6A3-202ENST00000347401 ATRIPQ8WXE1 791 aa15.14■□□□□ 0.01
COL6A3-202ENST00000347401 CSRNP2Q9H175 543 aa15.14■□□□□ 0.01
COL6A3-202ENST00000347401 NCOA1Q15788 1441 aa15.14■□□□□ 0.01
COL6A3-202ENST00000347401 SDAD1Q9NVU7 687 aaKnown RBP eCLIP15.14■□□□□ 0.01
COL6A3-202ENST00000347401 LRP2BPQ9P2M1 347 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms