RNA–Protein interactions for RNA: ENSMUST00000108530.1

Nup88-202, Transcript of Nuclear pore complex protein Nup88, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Nup88, Length 2,389 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88-202ENSMUST00000108530 Sipa1l3G3X9J0 1776 aa18■□□□□ 0.47
Nup88-202ENSMUST00000108530 Prl3d3A0A0M6L0J6 224 aa18■□□□□ 0.47
Nup88-202ENSMUST00000108530 Nol8Q3UHX0 1147 aaKnown RBP18■□□□□ 0.47
Nup88-202ENSMUST00000108530 Clca2Q8BG22 942 aa18■□□□□ 0.47
Nup88-202ENSMUST00000108530 Emilin2Q8K482 1074 aa18■□□□□ 0.47
Nup88-202ENSMUST00000108530 Ssc5dQ8BV57 1371 aa18■□□□□ 0.47
Nup88-202ENSMUST00000108530 Zkscan16A2ALW2 728 aa17.99■□□□□ 0.47
Nup88-202ENSMUST00000108530 Q8BT18 775 aa17.99■□□□□ 0.47
Nup88-202ENSMUST00000108530 Prr5lA2AVJ5 370 aa17.99■□□□□ 0.47
Nup88-202ENSMUST00000108530 Smc4Q8CG47 1286 aa17.99■□□□□ 0.47
Nup88-202ENSMUST00000108530 Rapgef4Q9EQZ6 1011 aa17.99■□□□□ 0.47
Nup88-202ENSMUST00000108530 Pmfbp1Q9WVQ0 1022 aa17.99■□□□□ 0.47
Nup88-202ENSMUST00000108530 Ubap1lG3UW59 384 aa17.98■□□□□ 0.47
Nup88-202ENSMUST00000108530 Atg9aQ68FE2 551 aa17.98■□□□□ 0.47
Nup88-202ENSMUST00000108530 Jakmip1Q8BVL9 626 aa17.98■□□□□ 0.47
Nup88-202ENSMUST00000108530 Chmp4cQ9D7F7 232 aa17.98■□□□□ 0.47
Nup88-202ENSMUST00000108530 Dmrtc1Q9D9R7 182 aa17.98■□□□□ 0.47
Nup88-202ENSMUST00000108530 Timm10P62073 90 aa17.98■□□□□ 0.47
Nup88-202ENSMUST00000108530 Fam84aQ9D650 292 aa17.98■□□□□ 0.47
Nup88-202ENSMUST00000108530 Mlh1Q9JK91 760 aa17.98■□□□□ 0.47
Nup88-202ENSMUST00000108530 InhbeO08717 350 aa17.97■□□□□ 0.47
Nup88-202ENSMUST00000108530 Gtf3c3Q3TMP1 882 aa17.97■□□□□ 0.47
Nup88-202ENSMUST00000108530 1700010I14RikQ7TPG0 532 aa17.97■□□□□ 0.47
Nup88-202ENSMUST00000108530 Cntnap1O54991 1385 aa17.97■□□□□ 0.47
Nup88-202ENSMUST00000108530 Prl3d2F6R3P9 224 aa17.97■□□□□ 0.47
Nup88-202ENSMUST00000108530 Hoxa7P02830 229 aa17.97■□□□□ 0.47
Nup88-202ENSMUST00000108530 Ncoa5Q91W39 579 aaKnown RBP17.97■□□□□ 0.47
Nup88-202ENSMUST00000108530 Vps54Q5SPW0 977 aa17.96■□□□□ 0.47
Nup88-202ENSMUST00000108530 Anxa1P10107 346 aaKnown RBP17.95■□□□□ 0.46
Nup88-202ENSMUST00000108530 Ltbp1Q8CG19 1712 aa17.95■□□□□ 0.46
Nup88-202ENSMUST00000108530 Nol10Q5RJG1 687 aaKnown RBP17.95■□□□□ 0.46
Nup88-202ENSMUST00000108530 Esco1Q69Z69 843 aa17.95■□□□□ 0.46
Nup88-202ENSMUST00000108530 Slf2Q6P9P0 1278 aa17.95■□□□□ 0.46
Nup88-202ENSMUST00000108530 Tmc2Q8R4P4 888 aa17.95■□□□□ 0.46
Nup88-202ENSMUST00000108530 Trip6Q9Z1Y4 480 aa17.95■□□□□ 0.46
Nup88-202ENSMUST00000108530 Cops6O88545 324 aa17.94■□□□□ 0.46
Nup88-202ENSMUST00000108530 Ccdc9Q8VC31 543 aaKnown RBP17.94■□□□□ 0.46
Nup88-202ENSMUST00000108530 Eya2O08575 532 aa17.94■□□□□ 0.46
Nup88-202ENSMUST00000108530 Irx3P81067 507 aa17.94■□□□□ 0.46
Nup88-202ENSMUST00000108530 AtrnQ9WU60 1428 aa17.94■□□□□ 0.46
Nup88-202ENSMUST00000108530 Kndc1Q0KK55 1742 aa17.94■□□□□ 0.46
Nup88-202ENSMUST00000108530 Dctn1O08788 1281 aa17.93■□□□□ 0.46
Nup88-202ENSMUST00000108530 Ppp4r3aQ6P2K6 820 aa17.93■□□□□ 0.46
Nup88-202ENSMUST00000108530 Kdm4cQ8VCD7 1054 aa17.93■□□□□ 0.46
Nup88-202ENSMUST00000108530 Phactr2B1AVP0 632 aa17.93■□□□□ 0.46
Nup88-202ENSMUST00000108530 Nlrp1aQ2LKU9 1182 aa17.93■□□□□ 0.46
Nup88-202ENSMUST00000108530 Rps6ka4Q9Z2B9 773 aa17.93■□□□□ 0.46
Nup88-202ENSMUST00000108530 Ppfia1B2RXQ2 1266 aa17.92■□□□□ 0.46
Nup88-202ENSMUST00000108530 NfkbibQ60778 359 aa17.92■□□□□ 0.46
Nup88-202ENSMUST00000108530 Cyp7a1Q64505 503 aa17.92■□□□□ 0.46
Nup88-202ENSMUST00000108530 Cyp27a1Q9DBG1 533 aa17.92■□□□□ 0.46
Nup88-202ENSMUST00000108530 Nhsl1Q8CAF4 1587 aa17.92■□□□□ 0.46
Nup88-202ENSMUST00000108530 Rnf123Q5XPI3 1314 aa17.91■□□□□ 0.46
Nup88-202ENSMUST00000108530 Rbbp8nlA2ABX0 614 aa17.91■□□□□ 0.46
Nup88-202ENSMUST00000108530 MccE9PWI3 1003 aa17.91■□□□□ 0.46
Nup88-202ENSMUST00000108530 Smarcc1P97496 1104 aa17.91■□□□□ 0.46
Nup88-202ENSMUST00000108530 Ddx46Q569Z5 1032 aaKnown RBP17.91■□□□□ 0.46
Nup88-202ENSMUST00000108530 Mrps27Q8BK72 415 aaKnown RBP17.91■□□□□ 0.46
Nup88-202ENSMUST00000108530 Top1mtQ8R4U6 593 aa17.91■□□□□ 0.46
Nup88-202ENSMUST00000108530 Cyp2c23E9Q5K4 494 aa17.9■□□□□ 0.46
Nup88-202ENSMUST00000108530 Ppfibp2O35711 882 aa17.9■□□□□ 0.46
Nup88-202ENSMUST00000108530 Ms4a2P20490 235 aa17.9■□□□□ 0.46
Nup88-202ENSMUST00000108530 Mdm2P23804 489 aa17.9■□□□□ 0.46
Nup88-202ENSMUST00000108530 Susd4Q8BH32 490 aa17.9■□□□□ 0.46
Nup88-202ENSMUST00000108530 Rad50P70388 1312 aa17.9■□□□□ 0.46
Nup88-202ENSMUST00000108530 Arap2Q8BZ05 1703 aa17.9■□□□□ 0.46
Nup88-202ENSMUST00000108530 Gpr182P43142 395 aa17.89■□□□□ 0.45
Nup88-202ENSMUST00000108530 Plcb3P51432 1234 aaKnown RBP17.89■□□□□ 0.45
Nup88-202ENSMUST00000108530 Ifit1bl2Q3U687 466 aa17.89■□□□□ 0.45
Nup88-202ENSMUST00000108530 Rab3gap1Q80UJ7 981 aa17.89■□□□□ 0.45
Nup88-202ENSMUST00000108530 Myh1Q5SX40 1942 aa17.89■□□□□ 0.45
Nup88-202ENSMUST00000108530 Gm13023A2A8N2 498 aa17.89■□□□□ 0.45
Nup88-202ENSMUST00000108530 Zbtb38Q3LR78 1197 aa17.89■□□□□ 0.45
Nup88-202ENSMUST00000108530 Lrit1Q8K099 624 aa17.89■□□□□ 0.45
Nup88-202ENSMUST00000108530 Foxo4Q9WVH3 505 aa17.89■□□□□ 0.45
Nup88-202ENSMUST00000108530 Fkbp1aP26883 108 aaKnown RBP17.88■□□□□ 0.45
Nup88-202ENSMUST00000108530 Ftl2P49945 183 aa17.88■□□□□ 0.45
Nup88-202ENSMUST00000108530 Trim34aQ99PP6 485 aa17.88■□□□□ 0.45
Nup88-202ENSMUST00000108530 Ltv1Q6NSQ7 470 aaKnown RBP17.88■□□□□ 0.45
Nup88-202ENSMUST00000108530 Fam102bQ8BQS4 339 aa17.88■□□□□ 0.45
Nup88-202ENSMUST00000108530 Taok3Q8BYC6 898 aa17.88■□□□□ 0.45
Nup88-202ENSMUST00000108530 Ankrd31A0A140LI88 1765 aa17.87■□□□□ 0.45
Nup88-202ENSMUST00000108530 NpeppsQ11011 920 aa17.87■□□□□ 0.45
Nup88-202ENSMUST00000108530 Ifit2Q64112 472 aa17.87■□□□□ 0.45
Nup88-202ENSMUST00000108530 Ddx11Q6AXC6 880 aa17.87■□□□□ 0.45
Nup88-202ENSMUST00000108530 Zkscan8Q8BSL0 588 aa17.87■□□□□ 0.45
Nup88-202ENSMUST00000108530 Golim4Q8BXA1 655 aa17.87■□□□□ 0.45
Nup88-202ENSMUST00000108530 NgdnQ9DB96 315 aaKnown RBP17.87■□□□□ 0.45
Nup88-202ENSMUST00000108530 Slc4a1P04919 929 aa17.86■□□□□ 0.45
Nup88-202ENSMUST00000108530 Rbm27Q5SFM8 1060 aaKnown RBP17.86■□□□□ 0.45
Nup88-202ENSMUST00000108530 Pde3bQ61409 1100 aa17.86■□□□□ 0.45
Nup88-202ENSMUST00000108530 Rhot2Q8JZN7 620 aa17.86■□□□□ 0.45
Nup88-202ENSMUST00000108530 Pus3Q9JI38 481 aa17.86■□□□□ 0.45
Nup88-202ENSMUST00000108530 Abca3Q8R420 1704 aa17.86■□□□□ 0.45
Nup88-202ENSMUST00000108530 Tbc1d4Q8BYJ6 1307 aa17.86■□□□□ 0.45
Nup88-202ENSMUST00000108530 EvcP57680 1005 aa17.86■□□□□ 0.45
Nup88-202ENSMUST00000108530 Gsdma2Q32M21 443 aa17.86■□□□□ 0.45
Nup88-202ENSMUST00000108530 Cypt2Q6P924 180 aa17.86■□□□□ 0.45
Nup88-202ENSMUST00000108530 Plcd4Q8K3R3 807 aa17.86■□□□□ 0.45
Nup88-202ENSMUST00000108530 Ciao1Q99KN2 339 aa17.86■□□□□ 0.45
Retrieved 100 of 22,080 RNA–protein pairs in 16.6 ms