RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 Q0VFX4 171 aa13.58□□□□□ -0.24
SHKBP1-211ENST00000595945 CHAF1BQ13112 559 aa13.58□□□□□ -0.24
SHKBP1-211ENST00000595945 LIN52Q52LA3 116 aa13.58□□□□□ -0.24
SHKBP1-211ENST00000595945 RNF220Q5VTB9 566 aa13.58□□□□□ -0.24
SHKBP1-211ENST00000595945 LYPD8Q6UX82 237 aa13.58□□□□□ -0.24
SHKBP1-211ENST00000595945 AMIGO2Q86SJ2 522 aa13.58□□□□□ -0.24
SHKBP1-211ENST00000595945 CARM1Q86X55 608 aa13.58□□□□□ -0.24
SHKBP1-211ENST00000595945 CLIP4Q8N3C7 705 aa13.58□□□□□ -0.24
SHKBP1-211ENST00000595945 EFHD2Q96C19 240 aaPredicted RBP13.58□□□□□ -0.24
SHKBP1-211ENST00000595945 OMA1Q96E52 524 aa13.58□□□□□ -0.24
SHKBP1-211ENST00000595945 CENPNQ96H22 339 aaPredicted RBP13.58□□□□□ -0.24
SHKBP1-211ENST00000595945 IP6K3Q96PC2 410 aa13.58□□□□□ -0.24
SHKBP1-211ENST00000595945 WFDC6Q9BQY6 131 aa13.58□□□□□ -0.24
SHKBP1-211ENST00000595945 DEFB126Q9BYW3 111 aa13.58□□□□□ -0.24
SHKBP1-211ENST00000595945 AMBRA1Q9C0C7 1298 aa13.58□□□□□ -0.24
SHKBP1-211ENST00000595945 HOXD1Q9GZZ0 328 aa13.58□□□□□ -0.24
SHKBP1-211ENST00000595945 GPN2Q9H9Y4 310 aaPredicted RBP13.58□□□□□ -0.24
SHKBP1-211ENST00000595945 NTN4Q9HB63 628 aa13.58□□□□□ -0.24
SHKBP1-211ENST00000595945 NDUFAF4Q9P032 175 aa13.58□□□□□ -0.24
SHKBP1-211ENST00000595945 DNAJB9Q9UBS3 223 aa13.58□□□□□ -0.24
SHKBP1-211ENST00000595945 ABCG2Q9UNQ0 655 aa13.58□□□□□ -0.24
SHKBP1-211ENST00000595945 ZNF232Q9UNY5 417 aa13.58□□□□□ -0.24
SHKBP1-211ENST00000595945 AK5Q9Y6K8 562 aa13.58□□□□□ -0.24
SHKBP1-211ENST00000595945 CDC14CA4D256 554 aa13.57□□□□□ -0.24
SHKBP1-211ENST00000595945 hCG_2039718K7EN88 272 aa13.57□□□□□ -0.24
SHKBP1-211ENST00000595945 DEAF1O75398 565 aaPredicted RBP13.57□□□□□ -0.24
SHKBP1-211ENST00000595945 LDLRP01130 860 aa13.57□□□□□ -0.24
SHKBP1-211ENST00000595945 IFNW1P05000 195 aa13.57□□□□□ -0.24
SHKBP1-211ENST00000595945 NGFRP08138 427 aa13.57□□□□□ -0.24
SHKBP1-211ENST00000595945 CYP4B1P13584 511 aa13.57□□□□□ -0.24
SHKBP1-211ENST00000595945 ICAM2P13598 275 aa13.57□□□□□ -0.24
SHKBP1-211ENST00000595945 LIFP15018 202 aa13.57□□□□□ -0.24
SHKBP1-211ENST00000595945 NAGAP17050 411 aa13.57□□□□□ -0.24
SHKBP1-211ENST00000595945 OR1E2P47887 323 aa13.57□□□□□ -0.24
SHKBP1-211ENST00000595945 RFX3P48380 749 aa13.57□□□□□ -0.24
SHKBP1-211ENST00000595945 PNLIPRP2P54317 469 aa13.57□□□□□ -0.24
SHKBP1-211ENST00000595945 SESN3P58005 492 aa13.57□□□□□ -0.24
SHKBP1-211ENST00000595945 PLCXD2Q0VAA5 305 aa13.57□□□□□ -0.24
SHKBP1-211ENST00000595945 FOXC1Q12948 553 aa13.57□□□□□ -0.24
SHKBP1-211ENST00000595945 FGFBP1Q14512 234 aa13.57□□□□□ -0.24
SHKBP1-211ENST00000595945 LARS2Q15031 903 aaKnown RBP13.57□□□□□ -0.24
SHKBP1-211ENST00000595945 GRAMD1BQ3KR37 738 aa13.57□□□□□ -0.24
SHKBP1-211ENST00000595945 TBC1D25Q3MII6 688 aa13.57□□□□□ -0.24
SHKBP1-211ENST00000595945 EIPR1Q53HC9 387 aa13.57□□□□□ -0.24
SHKBP1-211ENST00000595945 PDZK1Q5T2W1 519 aa13.57□□□□□ -0.24
SHKBP1-211ENST00000595945 OGFRL1Q5TC84 451 aaPredicted RBP13.57□□□□□ -0.24
SHKBP1-211ENST00000595945 TCTN3Q6NUS6 607 aa13.57□□□□□ -0.24
SHKBP1-211ENST00000595945 H3F3CQ6NXT2 135 aa13.57□□□□□ -0.24
SHKBP1-211ENST00000595945 C16orf47Q6ZP98 133 aaPredicted RBP13.57□□□□□ -0.24
SHKBP1-211ENST00000595945 LACC1Q8IV20 430 aa13.57□□□□□ -0.24
SHKBP1-211ENST00000595945 PRR22Q8IZ63 422 aa13.57□□□□□ -0.24
SHKBP1-211ENST00000595945 TAGAPQ8N103 731 aa13.57□□□□□ -0.24
SHKBP1-211ENST00000595945 SLC15A4Q8N697 577 aa13.57□□□□□ -0.24
SHKBP1-211ENST00000595945 KIAA1143Q96AT1 154 aaPredicted RBP13.57□□□□□ -0.24
SHKBP1-211ENST00000595945 ZNF300Q96RE9 604 aaPredicted RBP13.57□□□□□ -0.24
SHKBP1-211ENST00000595945 LIN28AQ9H9Z2 209 aaKnown RBP13.57□□□□□ -0.24
SHKBP1-211ENST00000595945 RYDENQ9NUL5 291 aaKnown RBP13.57□□□□□ -0.24
SHKBP1-211ENST00000595945 FLRT3Q9NZU0 649 aa13.57□□□□□ -0.24
SHKBP1-211ENST00000595945 MYOTQ9UBF9 498 aa13.57□□□□□ -0.24
SHKBP1-211ENST00000595945 SH3GLB1Q9Y371 365 aa13.57□□□□□ -0.24
SHKBP1-211ENST00000595945 NPFFR2Q9Y5X5 522 aa13.57□□□□□ -0.24
SHKBP1-211ENST00000595945 ENPP4Q9Y6X5 453 aa13.57□□□□□ -0.24
SHKBP1-211ENST00000595945 CACNA1AO00555 2505 aa13.57□□□□□ -0.24
SHKBP1-211ENST00000595945 CDHR4A6H8M9 788 aa13.56□□□□□ -0.24
SHKBP1-211ENST00000595945 OR6C70A6NIJ9 312 aa13.56□□□□□ -0.24
SHKBP1-211ENST00000595945 CLDN24A6NM45 220 aa13.56□□□□□ -0.24
SHKBP1-211ENST00000595945 WWP2O00308 870 aa13.56□□□□□ -0.24
SHKBP1-211ENST00000595945 REM1O75628 298 aa13.56□□□□□ -0.24
SHKBP1-211ENST00000595945 PPM1BO75688 479 aa13.56□□□□□ -0.24
SHKBP1-211ENST00000595945 UTS2O95399 124 aa13.56□□□□□ -0.24
SHKBP1-211ENST00000595945 CST1P01037 141 aa13.56□□□□□ -0.24
SHKBP1-211ENST00000595945 SERPINA7P05543 415 aa13.56□□□□□ -0.24
SHKBP1-211ENST00000595945 ITGAMP11215 1152 aa13.56□□□□□ -0.24
SHKBP1-211ENST00000595945 IL7RP16871 459 aa13.56□□□□□ -0.24
SHKBP1-211ENST00000595945 ITGA2P17301 1181 aa13.56□□□□□ -0.24
SHKBP1-211ENST00000595945 TBXA2RP21731 343 aa13.56□□□□□ -0.24
SHKBP1-211ENST00000595945 PTDSS1P48651 473 aaKnown RBP13.56□□□□□ -0.24
SHKBP1-211ENST00000595945 NRG3P56975 720 aa13.56□□□□□ -0.24
SHKBP1-211ENST00000595945 ATP1A4Q13733 1029 aa13.56□□□□□ -0.24
SHKBP1-211ENST00000595945 TRIP10Q15642 601 aa13.56□□□□□ -0.24
SHKBP1-211ENST00000595945 NPTX1Q15818 432 aa13.56□□□□□ -0.24
SHKBP1-211ENST00000595945 ZSWIM7Q19AV6 140 aa13.56□□□□□ -0.24
SHKBP1-211ENST00000595945 KLHL26Q53HC5 615 aa13.56□□□□□ -0.24
SHKBP1-211ENST00000595945 FNDC7Q5VTL7 733 aa13.56□□□□□ -0.24
SHKBP1-211ENST00000595945 OR2T5Q6IEZ7 315 aa13.56□□□□□ -0.24
SHKBP1-211ENST00000595945 ZNF605Q86T29 641 aa13.56□□□□□ -0.24
SHKBP1-211ENST00000595945 RBM45Q8IUH3 476 aaKnown RBP13.56□□□□□ -0.24
SHKBP1-211ENST00000595945 GRAMD2AQ8IUY3 354 aa13.56□□□□□ -0.24
SHKBP1-211ENST00000595945 CMIPQ8IY22 773 aa13.56□□□□□ -0.24
SHKBP1-211ENST00000595945 OR2T29Q8NH02 315 aa13.56□□□□□ -0.24
SHKBP1-211ENST00000595945 OR4C3Q8NH37 302 aa13.56□□□□□ -0.24
SHKBP1-211ENST00000595945 THAP3Q8WTV1 239 aaPredicted RBP13.56□□□□□ -0.24
SHKBP1-211ENST00000595945 PHF10Q8WUB8 498 aaKnown RBP13.56□□□□□ -0.24
SHKBP1-211ENST00000595945 RNF138Q8WVD3 245 aa13.56□□□□□ -0.24
SHKBP1-211ENST00000595945 HGDQ93099 445 aa13.56□□□□□ -0.24
SHKBP1-211ENST00000595945 SEMA6AQ9H2E6 1030 aa13.56□□□□□ -0.24
SHKBP1-211ENST00000595945 EVA1AQ9H8M9 152 aa13.56□□□□□ -0.24
SHKBP1-211ENST00000595945 CACYBPQ9HB71 228 aaKnown RBP13.56□□□□□ -0.24
SHKBP1-211ENST00000595945 UBQLN4Q9NRR5 601 aa13.56□□□□□ -0.24
SHKBP1-211ENST00000595945 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms