RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 D6RAR5 112 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 INMT-MINDY4F8WBC2 141 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 B3GALNT1O75752 331 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 CDRT1O95170 752 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 LGI1O95970 557 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 FAM157BP0CG42 384 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 GABRB1P18505 474 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 IDSP22304 550 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 PDHA2P29803 388 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 PRLHRP49683 370 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 UBE2IP63279 158 aaKnown RBP7.18□□□□□ -1.26
LIMA1-216ENST00000552909 ABATP80404 500 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 HNRNPA0Q13151 305 aaKnown RBP7.18□□□□□ -1.26
LIMA1-216ENST00000552909 RPA4Q13156 261 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 EXOSC2Q13868 293 aaKnown RBP7.18□□□□□ -1.26
LIMA1-216ENST00000552909 BOP1Q14137 746 aaKnown RBP7.18□□□□□ -1.26
LIMA1-216ENST00000552909 ZNF273Q14593 569 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 LRIF1Q5T3J3 769 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 METRNLQ641Q3 311 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 BICRALQ6AI39 1079 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 HSDL2Q6YN16 418 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 VTCN1Q7Z7D3 282 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 GALNT10Q86SR1 603 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 CFAP206Q8IYR0 622 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 Q8N402 240 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 LRRC17Q8N6Y2 441 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 RCBTB1Q8NDN9 531 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 OR2L2Q8NH16 312 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 UTP15Q8TED0 518 aaKnown RBP7.18□□□□□ -1.26
LIMA1-216ENST00000552909 CHTF18Q8WVB6 975 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 SGTBQ96EQ0 304 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 ZNF514Q96K75 400 aaPredicted RBP7.18□□□□□ -1.26
LIMA1-216ENST00000552909 KLHL15Q96M94 604 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 SORCS2Q96PQ0 1159 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 SLC38A3Q99624 504 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 USB1Q9BQ65 265 aaKnown RBP7.18□□□□□ -1.26
LIMA1-216ENST00000552909 CCM2Q9BSQ5 444 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 DPCDQ9BVM2 203 aaPredicted RBP7.18□□□□□ -1.26
LIMA1-216ENST00000552909 SLC6A15Q9H2J7 730 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 SEMA6CQ9H3T2 930 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 SERHL2Q9H4I8 314 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 CLMPQ9H6B4 373 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 HEXA-AS1Q9H8Q6 139 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 FOLH1BQ9HBA9 442 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 RDH8Q9NYR8 311 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 PTTG3PQ9NZH4 202 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 CNOT2Q9NZN8 540 aaKnown RBP7.18□□□□□ -1.26
LIMA1-216ENST00000552909 CD274Q9NZQ7 290 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 PHF11Q9UIL8 331 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 SSR3Q9UNL2 185 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 KIR2DS5A0A0G2JLQ3 304 aa7.17□□□□□ -1.26
LIMA1-216ENST00000552909 A0A0G2JNG1 304 aa7.17□□□□□ -1.26
LIMA1-216ENST00000552909 KIR2DS3K7RE56 304 aa7.17□□□□□ -1.26
LIMA1-216ENST00000552909 KPNA5O15131 536 aa7.17□□□□□ -1.26
LIMA1-216ENST00000552909 RGS14O43566 566 aa7.17□□□□□ -1.26
LIMA1-216ENST00000552909 PLOD3O60568 738 aa7.17□□□□□ -1.26
LIMA1-216ENST00000552909 IL1AP01583 271 aa7.17□□□□□ -1.26
LIMA1-216ENST00000552909 PROS1P07225 676 aa7.17□□□□□ -1.26
LIMA1-216ENST00000552909 CSF2RBP32927 897 aa7.17□□□□□ -1.26
LIMA1-216ENST00000552909 SOX3P41225 446 aa7.17□□□□□ -1.26
LIMA1-216ENST00000552909 CRYBB2P43320 205 aa7.17□□□□□ -1.26
LIMA1-216ENST00000552909 GPR3P46089 330 aa7.17□□□□□ -1.26
LIMA1-216ENST00000552909 INPP1P49441 399 aa7.17□□□□□ -1.26
LIMA1-216ENST00000552909 MADCAM1Q13477 382 aa7.17□□□□□ -1.26
LIMA1-216ENST00000552909 FGFBP1Q14512 234 aa7.17□□□□□ -1.26
LIMA1-216ENST00000552909 KIR2DS5Q14953 304 aa7.17□□□□□ -1.26
LIMA1-216ENST00000552909 ABRAXAS2Q15018 415 aa7.17□□□□□ -1.26
LIMA1-216ENST00000552909 ZNF658BQ4V348 819 aaPredicted RBP7.17□□□□□ -1.26
LIMA1-216ENST00000552909 PLAG1Q6DJT9 500 aa7.17□□□□□ -1.26
LIMA1-216ENST00000552909 ERICH5Q6P6B1 374 aa7.17□□□□□ -1.26
LIMA1-216ENST00000552909 WASH2PQ6VEQ5 465 aa7.17□□□□□ -1.26
LIMA1-216ENST00000552909 VRK3Q8IV63 474 aa7.17□□□□□ -1.26
LIMA1-216ENST00000552909 LIX1Q8N485 282 aa7.17□□□□□ -1.26
LIMA1-216ENST00000552909 KRTCAP2Q8N6L1 136 aa7.17□□□□□ -1.26
LIMA1-216ENST00000552909 CLDN22Q8N7P3 220 aa7.17□□□□□ -1.26
LIMA1-216ENST00000552909 OR4F6Q8NGB9 312 aa7.17□□□□□ -1.26
LIMA1-216ENST00000552909 OR9Q1Q8NGQ5 310 aa7.17□□□□□ -1.26
LIMA1-216ENST00000552909 PCNPQ8WW12 178 aaKnown RBP7.17□□□□□ -1.26
LIMA1-216ENST00000552909 ASZ1Q8WWH4 475 aa7.17□□□□□ -1.26
LIMA1-216ENST00000552909 PTP4A1Q93096 173 aa7.17□□□□□ -1.26
LIMA1-216ENST00000552909 CREB3L1Q96BA8 519 aa7.17□□□□□ -1.26
LIMA1-216ENST00000552909 LINC00615Q96LM1 132 aaPredicted RBP7.17□□□□□ -1.26
LIMA1-216ENST00000552909 NRTNQ99748 197 aa7.17□□□□□ -1.26
LIMA1-216ENST00000552909 MED28Q9H204 178 aa7.17□□□□□ -1.26
LIMA1-216ENST00000552909 ANKRA2Q9H9E1 313 aa7.17□□□□□ -1.26
LIMA1-216ENST00000552909 KLHL42Q9P2K6 505 aa7.17□□□□□ -1.26
LIMA1-216ENST00000552909 GLS2Q9UI32 602 aa7.17□□□□□ -1.26
LIMA1-216ENST00000552909 ACSL5Q9ULC5 683 aa7.17□□□□□ -1.26
LIMA1-216ENST00000552909 ASB1Q9Y576 335 aa7.17□□□□□ -1.26
LIMA1-216ENST00000552909 PCDHGB7Q9Y5F8 929 aa7.17□□□□□ -1.26
LIMA1-216ENST00000552909 PCDHGB3Q9Y5G1 929 aa7.17□□□□□ -1.26
LIMA1-216ENST00000552909 HRH3Q9Y5N1 445 aa7.17□□□□□ -1.26
LIMA1-216ENST00000552909 DNMT3AQ9Y6K1 912 aaPredicted RBP7.17□□□□□ -1.26
LIMA1-216ENST00000552909 BOD1L1Q8NFC6 3051 aa7.17□□□□□ -1.26
LIMA1-216ENST00000552909 LOC102723532A0A0G2JNH3 316 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 SH3D21A4FU49 640 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 QSOX1O00391 747 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 CHP2O43745 196 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 DPM1O60762 260 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 GUCA1CO95843 209 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms