RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 CCNKO75909 580 aa12.27□□□□□ -0.44
LDLR-203ENST00000535915 OR5F1O95221 314 aa12.27□□□□□ -0.44
LDLR-203ENST00000535915 COL9A1P20849 921 aa12.27□□□□□ -0.44
LDLR-203ENST00000535915 TLX1P31314 330 aaPredicted RBP12.27□□□□□ -0.44
LDLR-203ENST00000535915 GABRA5P31644 462 aa12.27□□□□□ -0.44
LDLR-203ENST00000535915 SOX18P35713 384 aa12.27□□□□□ -0.44
LDLR-203ENST00000535915 ATP6V1E1P36543 226 aa12.27□□□□□ -0.44
LDLR-203ENST00000535915 NR4A2P43354 598 aa12.27□□□□□ -0.44
LDLR-203ENST00000535915 FABP5Q01469 135 aa12.27□□□□□ -0.44
LDLR-203ENST00000535915 TAB1Q15750 504 aa12.27□□□□□ -0.44
LDLR-203ENST00000535915 DUSP5Q16690 384 aa12.27□□□□□ -0.44
LDLR-203ENST00000535915 PRRT3Q5FWE3 981 aa12.27□□□□□ -0.44
LDLR-203ENST00000535915 C9orf50Q5SZB4 431 aa12.27□□□□□ -0.44
LDLR-203ENST00000535915 CCNJQ5T5M9 372 aa12.27□□□□□ -0.44
LDLR-203ENST00000535915 DDI2Q5TDH0 399 aa12.27□□□□□ -0.44
LDLR-203ENST00000535915 LSRQ86X29 649 aaPredicted RBP12.27□□□□□ -0.44
LDLR-203ENST00000535915 SAMD14Q8IZD0 417 aaPredicted RBP12.27□□□□□ -0.44
LDLR-203ENST00000535915 POGLUT1Q8NBL1 392 aa12.27□□□□□ -0.44
LDLR-203ENST00000535915 OR10G6Q8NH81 332 aa12.27□□□□□ -0.44
LDLR-203ENST00000535915 DOK4Q8TEW6 326 aa12.27□□□□□ -0.44
LDLR-203ENST00000535915 OTULINQ96BN8 352 aa12.27□□□□□ -0.44
LDLR-203ENST00000535915 MSLNLQ96KJ4 702 aa12.27□□□□□ -0.44
LDLR-203ENST00000535915 NEDD4LQ96PU5 975 aa12.27□□□□□ -0.44
LDLR-203ENST00000535915 SERINC2Q96SA4 455 aa12.27□□□□□ -0.44
LDLR-203ENST00000535915 KATNB1Q9BVA0 655 aa12.27□□□□□ -0.44
LDLR-203ENST00000535915 NLGN3Q9NZ94 848 aa12.27□□□□□ -0.44
LDLR-203ENST00000535915 YBX2Q9Y2T7 364 aaKnown RBP12.27□□□□□ -0.44
LDLR-203ENST00000535915 PCDHGB2Q9Y5G2 931 aa12.27□□□□□ -0.44
LDLR-203ENST00000535915 CSNK1G3Q9Y6M4 447 aa12.27□□□□□ -0.44
LDLR-203ENST00000535915 A0A1W2PQ09 198 aa12.27□□□□□ -0.45
LDLR-203ENST00000535915 B3GALT2O43825 422 aa12.27□□□□□ -0.45
LDLR-203ENST00000535915 CTSVO60911 334 aa12.27□□□□□ -0.45
LDLR-203ENST00000535915 DAB2P98082 770 aa12.27□□□□□ -0.45
LDLR-203ENST00000535915 IFITM2Q01629 132 aa12.27□□□□□ -0.45
LDLR-203ENST00000535915 ID2Q02363 134 aa12.27□□□□□ -0.45
LDLR-203ENST00000535915 RUNX2Q13950 521 aa12.27□□□□□ -0.45
LDLR-203ENST00000535915 PGGHGQ32M88 737 aa12.27□□□□□ -0.45
LDLR-203ENST00000535915 ARHGAP11BQ3KRB8 267 aa12.27□□□□□ -0.45
LDLR-203ENST00000535915 AADACL4Q5VUY2 407 aa12.27□□□□□ -0.45
LDLR-203ENST00000535915 SYCE2Q6PIF2 218 aa12.27□□□□□ -0.45
LDLR-203ENST00000535915 ZNF620Q6ZNG0 422 aa12.27□□□□□ -0.45
LDLR-203ENST00000535915 OR2L13Q8N349 312 aa12.27□□□□□ -0.45
LDLR-203ENST00000535915 OR2T33Q8NG76 320 aa12.27□□□□□ -0.45
LDLR-203ENST00000535915 TMEM168Q9H0V1 697 aa12.27□□□□□ -0.45
LDLR-203ENST00000535915 TP63Q9H3D4 680 aaPredicted RBP12.27□□□□□ -0.45
LDLR-203ENST00000535915 H2AFY2Q9P0M6 372 aaPredicted RBP12.27□□□□□ -0.45
LDLR-203ENST00000535915 NTMQ9P121 344 aa12.27□□□□□ -0.45
LDLR-203ENST00000535915 CENPVL1A0A0U1RR11 272 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 ZNF860A6NHJ4 632 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 TMCC2O75069 709 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 RASGRP1O95267 797 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 SLC2A10O95528 541 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 LALBAP00709 142 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 LAMP2P13473 410 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 PBX2P40425 430 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 CAV3P56539 151 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 KIAA1024LP59773 190 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 SCN1BQ07699 218 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 DSG2Q14126 1118 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 NFATC4Q14934 902 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 TMEM44Q2T9K0 475 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 GLYR1Q49A26 553 aaPredicted RBP12.26□□□□□ -0.45
LDLR-203ENST00000535915 TRMT12Q53H54 448 aaKnown RBP12.26□□□□□ -0.45
LDLR-203ENST00000535915 PDZK1Q5T2W1 519 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 RSBN1Q5VWQ0 802 aaPredicted RBP12.26□□□□□ -0.45
LDLR-203ENST00000535915 HSDL2Q6YN16 418 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 SIX5Q8N196 739 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 BBS1Q8NFJ9 593 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 CHAC2Q8WUX2 184 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 AP3S1Q92572 193 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 SAMD8Q96LT4 415 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 WDR92Q96MX6 357 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 OR2A5Q96R48 311 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 GABRG3Q99928 467 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 MED18Q9BUE0 208 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 MOV10Q9HCE1 1003 aaKnown RBP12.26□□□□□ -0.45
LDLR-203ENST00000535915 DAPP1Q9UN19 280 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 SPTBN5Q9NRC6 3674 aaKnown RBP12.26□□□□□ -0.45
LDLR-203ENST00000535915 A0A1W2PQF6 199 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 URADA6NGE7 173 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 CDC42EP2O14613 210 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 CASKO14936 926 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 KLF8O95600 359 aaPredicted RBP12.26□□□□□ -0.45
LDLR-203ENST00000535915 UGT2B7P16662 529 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 POLR2CP19387 275 aaPredicted RBP12.26□□□□□ -0.45
LDLR-203ENST00000535915 NDUFV2P19404 249 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 RFX2P48378 723 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 MADCAM1Q13477 382 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 KIR2DS3Q14952 304 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 ANKRD54Q6NXT1 300 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 ZNF517Q6ZMY9 492 aaPredicted RBP12.26□□□□□ -0.45
LDLR-203ENST00000535915 OR7G1Q8NGA0 311 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 TM4SF19Q96DZ7 209 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 SIPA1Q96FS4 1042 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 ZNF486Q96H40 463 aaPredicted RBP12.26□□□□□ -0.45
LDLR-203ENST00000535915 SDF2Q99470 211 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 TMED9Q9BVK6 235 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 PBX4Q9BYU1 374 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 HOXD1Q9GZZ0 328 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 MARCH7Q9H992 704 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms