RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 SLC5A12Q1EHB4 618 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 PYCR3Q53H96 274 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 ARHGAP40Q5TG30 622 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 MTFR2Q6P444 385 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 TMEM17Q86X19 198 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 ACBD7Q8N6N7 88 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 CHST4Q8NCG5 386 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 OR52E1Q8NGJ3 308 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 TGM7Q96PF1 710 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 IKZF5Q9H5V7 419 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 CACNG2Q9Y698 323 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 CREBL2O60519 120 aaPredicted RBP15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 CD3GP09693 182 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 GKN2Q86XP6 184 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 HMGCLL1Q8TB92 370 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 S100A16Q96FQ6 103 aaKnown RBP15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 JSRP1Q96MG2 331 aaPredicted RBP15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 TRPV4Q9HBA0 871 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 COPZ2Q9P299 210 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 KLHL21Q9UJP4 597 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 CA14Q9ULX7 337 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 PCDHGA6Q9Y5G7 932 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 POM121CA8CG34 1229 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 H3BSH0 61 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 ZNF432O94892 652 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 RPP14O95059 124 aaKnown RBP15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 TFP02787 698 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 THEGLP0DJG4 465 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 POU6F2P78424 691 aaPredicted RBP15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 CTBSQ01459 385 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 FCN2Q15485 313 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 XKR7Q5GH72 579 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 LCTLQ6UWM7 567 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 NXPE3Q969Y0 559 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 NT5DC2Q9H857 520 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 PCDHGB1Q9Y5G3 927 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 A0A0X1KG70 313 aa15.35■□□□□ 0.05
CCDC88B-209ENST00000494080 C5orf51A6NDU8 294 aa15.35■□□□□ 0.05
CCDC88B-209ENST00000494080 CXCL10P02778 98 aa15.35■□□□□ 0.05
CCDC88B-209ENST00000494080 GNSP15586 552 aa15.35■□□□□ 0.05
CCDC88B-209ENST00000494080 ZNF3P17036 446 aa15.35■□□□□ 0.05
CCDC88B-209ENST00000494080 HNRNPA2B1P22626 353 aaKnown RBP15.35■□□□□ 0.05
CCDC88B-209ENST00000494080 GIFP27352 417 aa15.35■□□□□ 0.05
CCDC88B-209ENST00000494080 PITPNBP48739 271 aa15.35■□□□□ 0.05
CCDC88B-209ENST00000494080 ARRB1P49407 418 aaPredicted RBP15.35■□□□□ 0.05
CCDC88B-209ENST00000494080 RPS15AP62244 130 aaKnown RBP15.35■□□□□ 0.05
CCDC88B-209ENST00000494080 MLLT11Q13015 90 aaPredicted RBP15.35■□□□□ 0.05
CCDC88B-209ENST00000494080 SUN3Q8TAQ9 357 aa15.35■□□□□ 0.05
CCDC88B-209ENST00000494080 TESCQ96BS2 214 aa15.35■□□□□ 0.05
CCDC88B-209ENST00000494080 NDRG4Q9ULP0 352 aaKnown RBP15.35■□□□□ 0.05
CCDC88B-209ENST00000494080 LIPT1Q9Y234 373 aa15.35■□□□□ 0.05
CCDC88B-209ENST00000494080 YARS2Q9Y2Z4 477 aaKnown RBP15.35■□□□□ 0.05
CCDC88B-209ENST00000494080 PAPPA2Q9BXP8 1791 aa15.35■□□□□ 0.05
CCDC88B-209ENST00000494080 OR12D2P58182 307 aa15.35■□□□□ 0.05
CCDC88B-209ENST00000494080 CCDC107Q8WV48 283 aa15.35■□□□□ 0.05
CCDC88B-209ENST00000494080 NKD1Q969G9 470 aa15.35■□□□□ 0.05
CCDC88B-209ENST00000494080 PRTFDC1Q9NRG1 225 aa15.35■□□□□ 0.05
CCDC88B-209ENST00000494080 OR6C2Q9NZP2 312 aa15.35■□□□□ 0.05
CCDC88B-209ENST00000494080 RNASET2O00584 256 aaKnown RBP15.35■□□□□ 0.05
CCDC88B-209ENST00000494080 SCDO00767 359 aa15.35■□□□□ 0.05
CCDC88B-209ENST00000494080 SDC3O75056 442 aa15.35■□□□□ 0.05
CCDC88B-209ENST00000494080 CCR2P41597 374 aa15.35■□□□□ 0.05
CCDC88B-209ENST00000494080 HHEXQ03014 270 aa15.35■□□□□ 0.05
CCDC88B-209ENST00000494080 RLN3Q8WXF3 142 aa15.35■□□□□ 0.05
CCDC88B-209ENST00000494080 CHFRQ96EP1 664 aa15.35■□□□□ 0.05
CCDC88B-209ENST00000494080 SGTBQ96EQ0 304 aa15.35■□□□□ 0.05
CCDC88B-209ENST00000494080 MAP6Q96JE9 813 aa15.35■□□□□ 0.05
CCDC88B-209ENST00000494080 NIPSNAP1Q9BPW8 284 aa15.35■□□□□ 0.05
CCDC88B-209ENST00000494080 TAPBPLQ9BX59 468 aa15.35■□□□□ 0.05
CCDC88B-209ENST00000494080 AKR7A2O43488 359 aa15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 LILRB3O75022 631 aa15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 ITGA10O75578 1167 aa15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 KRT33AO76009 404 aa15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 TRAPPC2P0DI81 140 aa15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 TRAPPC2BP0DI82 140 aa15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 CXCR1P25024 350 aa15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 HOXC8P31273 242 aa15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 DBPQ10586 325 aaPredicted RBP15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 MEX3DQ86XN8 651 aaKnown RBP15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 SMPDL3BQ92485 455 aa15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 PRSS16Q9NQE7 514 aa15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 TEX10Q9NXF1 929 aaPredicted RBP15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 ZNF670-ZNF695F2Z2N8 137 aa15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 K7ESM1 405 aa15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 HMGN2P05204 90 aaKnown RBP15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 PROS1P07225 676 aa15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 GIMD1P0DJR0 217 aa15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 ACPPP15309 386 aa15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 MC3RP41968 323 aa15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 GCGRP47871 477 aa15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 TSC22D1Q15714 1073 aa15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 DECR1Q16698 335 aa15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 WDR53Q7Z5U6 358 aaPredicted RBP15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 ACOT4Q8N9L9 421 aa15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 FCAMRQ8WWV6 532 aa15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 MOAP1Q96BY2 351 aa15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 LDHAL6BQ9BYZ2 381 aaPredicted RBP15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 TM7SF3Q9NS93 570 aa15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 NLGN3Q9NZ94 848 aa15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 140.6 ms